RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 TSPY4P0CV99 314 aa22.38■■□□□ 1.17
SNHG1-213ENST00000540725 TSPY10P0CW01 314 aa22.38■■□□□ 1.17
SNHG1-213ENST00000540725 A2ML1A8K2U0 1454 aa22.37■■□□□ 1.17
SNHG1-213ENST00000540725 MAST1Q9Y2H9 1570 aa22.37■■□□□ 1.17
SNHG1-213ENST00000540725 KANK4Q5T7N3 995 aaPredicted RBP22.37■■□□□ 1.17
SNHG1-213ENST00000540725 TCOF1Q13428 1488 aaKnown RBP22.36■■□□□ 1.17
SNHG1-213ENST00000540725 DNMT1P26358 1616 aaKnown RBP22.36■■□□□ 1.17
SNHG1-213ENST00000540725 PZPP20742 1482 aa22.36■■□□□ 1.17
SNHG1-213ENST00000540725 PKD2Q13563 968 aa22.35■■□□□ 1.17
SNHG1-213ENST00000540725 MYOM3Q5VTT5 1437 aa22.34■■□□□ 1.17
SNHG1-213ENST00000540725 IQSEC2Q5JU85 1478 aa22.33■■□□□ 1.17
SNHG1-213ENST00000540725 TNRQ92752 1358 aa22.33■■□□□ 1.17
SNHG1-213ENST00000540725 RNF17Q9BXT8 1623 aaKnown RBP22.33■■□□□ 1.16
SNHG1-213ENST00000540725 MIA2Q96PC5 1412 aa22.33■■□□□ 1.16
SNHG1-213ENST00000540725 WASHC2CQ9Y4E1 1318 aa22.32■■□□□ 1.16
SNHG1-213ENST00000540725 FBXO31Q5XUX0 539 aaPredicted RBP22.32■■□□□ 1.16
SNHG1-213ENST00000540725 POLR1AO95602 1720 aaPredicted RBP22.31■■□□□ 1.16
SNHG1-213ENST00000540725 EIF2AK4Q9P2K8 1649 aaKnown RBP22.3■■□□□ 1.16
SNHG1-213ENST00000540725 ZNF335Q9H4Z2 1342 aaPredicted RBP22.29■■□□□ 1.16
SNHG1-213ENST00000540725 ZC3H13Q5T200 1668 aaKnown RBP22.28■■□□□ 1.16
SNHG1-213ENST00000540725 ABCC3O15438 1527 aa22.25■■□□□ 1.15
SNHG1-213ENST00000540725 CROCC2H7BZ55 1655 aa22.25■■□□□ 1.15
SNHG1-213ENST00000540725 MROH1Q8NDA8 1641 aa22.24■■□□□ 1.15
SNHG1-213ENST00000540725 NLRP1Q9C000 1473 aa22.23■■□□□ 1.15
SNHG1-213ENST00000540725 NEURL4Q96JN8 1562 aa22.23■■□□□ 1.15
SNHG1-213ENST00000540725 CEP152O94986 1710 aa22.23■■□□□ 1.15
SNHG1-213ENST00000540725 CFAP65Q6ZU64 1925 aaKnown RBP22.23■■□□□ 1.15
SNHG1-213ENST00000540725 PTPN23Q9H3S7 1636 aa22.23■■□□□ 1.15
SNHG1-213ENST00000540725 DUOX2Q9NRD8 1548 aa22.22■■□□□ 1.15
SNHG1-213ENST00000540725 APLP2Q06481 763 aa22.22■■□□□ 1.15
SNHG1-213ENST00000540725 UGGT1Q9NYU2 1555 aa22.2■■□□□ 1.15
SNHG1-213ENST00000540725 SPATA31D1Q6ZQQ2 1576 aa22.2■■□□□ 1.14
SNHG1-213ENST00000540725 SHANK2Q9UPX8 1470 aa22.19■■□□□ 1.14
SNHG1-213ENST00000540725 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.18■■□□□ 1.147e-33■□□□□ 8.4
SNHG1-213ENST00000540725 THEMISQ8N1K5 641 aaPredicted RBP22.17■■□□□ 1.14
SNHG1-213ENST00000540725 ABCC5O15440 1437 aa22.17■■□□□ 1.14
SNHG1-213ENST00000540725 KIF15Q9NS87 1388 aa22.17■■□□□ 1.14
SNHG1-213ENST00000540725 ERVK-7P63135 1459 aa22.16■■□□□ 1.14
SNHG1-213ENST00000540725 DEPDC5O75140 1603 aa22.15■■□□□ 1.14
SNHG1-213ENST00000540725 FGD6Q6ZV73 1430 aa22.14■■□□□ 1.14
SNHG1-213ENST00000540725 ANKLE2Q86XL3 938 aa22.14■■□□□ 1.14
SNHG1-213ENST00000540725 PRDM15P57071 1507 aaPredicted RBP22.14■■□□□ 1.14
SNHG1-213ENST00000540725 DAPK1P53355 1430 aa22.14■■□□□ 1.13
SNHG1-213ENST00000540725 ERBINQ96RT1 1412 aa22.14■■□□□ 1.13
SNHG1-213ENST00000540725 UBAP1LF5GYI3 381 aa22.13■■□□□ 1.13
SNHG1-213ENST00000540725 DISP3Q9P2K9 1392 aa22.11■■□□□ 1.13
SNHG1-213ENST00000540725 MED14O60244 1454 aa22.11■■□□□ 1.13
SNHG1-213ENST00000540725 CPS1P31327 1500 aa22.11■■□□□ 1.13
SNHG1-213ENST00000540725 IQGAP1P46940 1657 aa22.11■■□□□ 1.13
SNHG1-213ENST00000540725 RRP7BPQ9NSQ0 103 aa22.11■■□□□ 1.13
SNHG1-213ENST00000540725 NPHP4O75161 1426 aaPredicted RBP22.1■■□□□ 1.13
SNHG1-213ENST00000540725 UBR1Q8IWV7 1749 aa22.1■■□□□ 1.13
SNHG1-213ENST00000540725 VWDEQ8N2E2 1590 aa22.09■■□□□ 1.13
SNHG1-213ENST00000540725 ARHGAP31Q2M1Z3 1444 aa22.07■■□□□ 1.12
SNHG1-213ENST00000540725 ANKRD30AQ9BXX3 1397 aa22.04■■□□□ 1.12
SNHG1-213ENST00000540725 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.03■■□□□ 1.12
SNHG1-213ENST00000540725 CHIC2Q9UKJ5 165 aa22.03■■□□□ 1.12
SNHG1-213ENST00000540725 KANK1Q14678 1352 aa22.02■■□□□ 1.12
SNHG1-213ENST00000540725 STRCP1A6NGW2 1772 aa22.01■■□□□ 1.11
SNHG1-213ENST00000540725 PIK3C2BO00750 1634 aa21.99■■□□□ 1.11
SNHG1-213ENST00000540725 LMTK2Q8IWU2 1503 aa21.99■■□□□ 1.11
SNHG1-213ENST00000540725 SCAF11Q99590 1463 aaKnown RBP21.99■■□□□ 1.11
SNHG1-213ENST00000540725 SLIT1O75093 1534 aa21.98■■□□□ 1.11
SNHG1-213ENST00000540725 ADGRL2O95490 1459 aa21.98■■□□□ 1.11
SNHG1-213ENST00000540725 ARHGAP23Q9P227 1491 aa21.98■■□□□ 1.11
SNHG1-213ENST00000540725 ILDR2Q71H61 639 aa21.98■■□□□ 1.11
SNHG1-213ENST00000540725 SCAF1Q9H7N4 1312 aaKnown RBP21.97■■□□□ 1.11
SNHG1-213ENST00000540725 TOM1O60784 492 aa21.97■■□□□ 1.11
SNHG1-213ENST00000540725 SYNMO15061 1565 aa21.96■■□□□ 1.11
SNHG1-213ENST00000540725 PIP4K2BP78356 416 aa21.95■■□□□ 1.1
SNHG1-213ENST00000540725 FAM50AQ14320 339 aaKnown RBP21.94■■□□□ 1.1
SNHG1-213ENST00000540725 KDM5AP29375 1690 aaKnown RBP21.94■■□□□ 1.1
SNHG1-213ENST00000540725 EFCAB6Q5THR3 1501 aa21.93■■□□□ 1.1
SNHG1-213ENST00000540725 LRRC7Q96NW7 1537 aa21.92■■□□□ 1.1
SNHG1-213ENST00000540725 ALKQ9UM73 1620 aa21.92■■□□□ 1.1
SNHG1-213ENST00000540725 LTKP29376 864 aa21.92■■□□□ 1.1
SNHG1-213ENST00000540725 TXNDC2Q86VQ3 553 aa21.92■■□□□ 1.1
SNHG1-213ENST00000540725 HSPA1LP34931 641 aa21.89■■□□□ 1.1
SNHG1-213ENST00000540725 EID1Q9Y6B2 187 aa21.89■■□□□ 1.1
SNHG1-213ENST00000540725 STAG3Q9UJ98 1225 aa21.88■■□□□ 1.09
SNHG1-213ENST00000540725 TMEM2Q9UHN6 1383 aa21.88■■□□□ 1.09
SNHG1-213ENST00000540725 NOS1P29475 1434 aa21.88■■□□□ 1.09
SNHG1-213ENST00000540725 ANKRD50Q9ULJ7 1429 aa21.88■■□□□ 1.09
SNHG1-213ENST00000540725 IDI1Q13907 227 aa21.87■■□□□ 1.09
SNHG1-213ENST00000540725 XIRP1Q702N8 1843 aaKnown RBP21.86■■□□□ 1.09
SNHG1-213ENST00000540725 ADGRB3O60242 1522 aa21.85■■□□□ 1.09
SNHG1-213ENST00000540725 TET3O43151 1660 aa21.85■■□□□ 1.09
SNHG1-213ENST00000540725 SOCS7O14512 581 aa21.84■■□□□ 1.09
SNHG1-213ENST00000540725 RPRD2Q5VT52 1461 aaKnown RBP21.83■■□□□ 1.08
SNHG1-213ENST00000540725 GCC2Q8IWJ2 1684 aa21.82■■□□□ 1.08
SNHG1-213ENST00000540725 MYO5BQ9ULV0 1848 aa21.82■■□□□ 1.08
SNHG1-213ENST00000540725 UNC13BO14795 1591 aa21.81■■□□□ 1.08
SNHG1-213ENST00000540725 MED1Q15648 1581 aaPredicted RBP21.81■■□□□ 1.08
SNHG1-213ENST00000540725 SLC52A1Q9NWF4 448 aa21.79■■□□□ 1.08
SNHG1-213ENST00000540725 ROCK1Q13464 1354 aa21.75■■□□□ 1.07
SNHG1-213ENST00000540725 E9PCH4 1651 aa21.74■■□□□ 1.07
SNHG1-213ENST00000540725 SLC26A8Q96RN1 970 aa21.74■■□□□ 1.07
SNHG1-213ENST00000540725 IQGAP3Q86VI3 1631 aa21.73■■□□□ 1.07
SNHG1-213ENST00000540725 SENP3Q9H4L4 574 aaPredicted RBP21.73■■□□□ 1.07
SNHG1-213ENST00000540725 TMEM131LA2VDJ0 1609 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms