RNA–Protein interactions for RNA: ENST00000540109.5

PTPRD-214, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 6,210 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-214ENST00000540109 PLCH2O75038 1416 aa8.1□□□□□ -1.11
PTPRD-214ENST00000540109 DENND4BO75064 1496 aaPredicted RBP8.1□□□□□ -1.11
PTPRD-214ENST00000540109 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.1□□□□□ -1.11
PTPRD-214ENST00000540109 RTEL1-TNFRSF6BF6WH68 1400 aa8.1□□□□□ -1.11
PTPRD-214ENST00000540109 ANP32CO43423 234 aa8.1□□□□□ -1.11
PTPRD-214ENST00000540109 CDK11BP21127 795 aaKnown RBP8.1□□□□□ -1.11
PTPRD-214ENST00000540109 HAP1P54257 671 aaPredicted RBP8.1□□□□□ -1.11
PTPRD-214ENST00000540109 ANP32BQ92688 251 aaKnown RBP8.1□□□□□ -1.11
PTPRD-214ENST00000540109 TRIM44Q96DX7 344 aaPredicted RBP8.1□□□□□ -1.11
PTPRD-214ENST00000540109 EFCAB2Q5VUJ9 269 aa8.09□□□□□ -1.11
PTPRD-214ENST00000540109 ARID3CA6NKF2 412 aa8.09□□□□□ -1.11
PTPRD-214ENST00000540109 ZNF777Q9ULD5 760 aaPredicted RBP8.09□□□□□ -1.11
PTPRD-214ENST00000540109 NOP58Q9Y2X3 529 aaKnown RBP8.09□□□□□ -1.11
PTPRD-214ENST00000540109 LAS1LQ9Y4W2 734 aaKnown RBP8.09□□□□□ -1.11
PTPRD-214ENST00000540109 UHRF1BP1Q6BDS2 1440 aa8.09□□□□□ -1.11
PTPRD-214ENST00000540109 POLR1AO95602 1720 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-214ENST00000540109 TTC37Q6PGP7 1564 aa8.08□□□□□ -1.12
PTPRD-214ENST00000540109 CFAP74Q9C0B2 1584 aa8.08□□□□□ -1.12
PTPRD-214ENST00000540109 ZNF644Q9H582 1327 aaPredicted RBP8.08□□□□□ -1.12
PTPRD-214ENST00000540109 STAC3Q96MF2 364 aa8.08□□□□□ -1.12
PTPRD-214ENST00000540109 ABCC1P33527 1531 aa8.07□□□□□ -1.12
PTPRD-214ENST00000540109 MAGI2Q86UL8 1455 aa8.07□□□□□ -1.12
PTPRD-214ENST00000540109 IQGAP3Q86VI3 1631 aa8.07□□□□□ -1.12
PTPRD-214ENST00000540109 ROCK2O75116 1388 aaKnown RBP8.07□□□□□ -1.12
PTPRD-214ENST00000540109 PPM1GO15355 546 aaPredicted RBP8.07□□□□□ -1.12
PTPRD-214ENST00000540109 SYCP2Q9BX26 1530 aa8.07□□□□□ -1.12
PTPRD-214ENST00000540109 NUP155O75694 1391 aa8.07□□□□□ -1.12
PTPRD-214ENST00000540109 ATP10AO60312 1499 aa8.06□□□□□ -1.12
PTPRD-214ENST00000540109 RALGAPBQ86X10 1494 aa8.06□□□□□ -1.12
PTPRD-214ENST00000540109 EIF2AK4Q9P2K8 1649 aaKnown RBP8.05□□□□□ -1.12
PTPRD-214ENST00000540109 FAM135AQ9P2D6 1515 aa8.05□□□□□ -1.12
PTPRD-214ENST00000540109 ABCA9Q8IUA7 1624 aa8.05□□□□□ -1.12
PTPRD-214ENST00000540109 L3MBTL2Q969R5 705 aa8.05□□□□□ -1.12
PTPRD-214ENST00000540109 HSP90AA1P07900 732 aaKnown RBP8.05□□□□□ -1.12
PTPRD-214ENST00000540109 CNTLNQ9NXG0 1405 aa8.04□□□□□ -1.12
PTPRD-214ENST00000540109 LAMC1P11047 1609 aa8.04□□□□□ -1.12
PTPRD-214ENST00000540109 PKD2Q13563 968 aa8.04□□□□□ -1.12
PTPRD-214ENST00000540109 DDRGK1Q96HY6 314 aa8.04□□□□□ -1.12
PTPRD-214ENST00000540109 NEURL4Q96JN8 1562 aa8.03□□□□□ -1.12
PTPRD-214ENST00000540109 PDE4CQ08493 712 aa8.03□□□□□ -1.12
PTPRD-214ENST00000540109 KTN1Q86UP2 1357 aaKnown RBP8.02□□□□□ -1.12
PTPRD-214ENST00000540109 CCDC144AA2RUR9 1427 aa8.02□□□□□ -1.13
PTPRD-214ENST00000540109 HSPA5P11021 654 aaKnown RBP8.02□□□□□ -1.13
PTPRD-214ENST00000540109 DDX10Q13206 875 aaKnown RBP8.02□□□□□ -1.13
PTPRD-214ENST00000540109 ARID3AQ99856 593 aa8.02□□□□□ -1.13
PTPRD-214ENST00000540109 ERCC6L2Q5T890 1561 aa8.02□□□□□ -1.13
PTPRD-214ENST00000540109 KANK1Q14678 1352 aa8.02□□□□□ -1.13
PTPRD-214ENST00000540109 CCDC7Q96M83 1385 aa8.01□□□□□ -1.13
PTPRD-214ENST00000540109 SPATA31E1Q6ZUB1 1445 aa8.01□□□□□ -1.13
PTPRD-214ENST00000540109 HNRNPMP52272 730 aaKnown RBP eCLIP8□□□□□ -1.13
PTPRD-214ENST00000540109 HNRNPUQ00839 825 aaKnown RBP eCLIP8□□□□□ -1.13
PTPRD-214ENST00000540109 INO80Q9ULG1 1556 aaPredicted RBP8□□□□□ -1.13
PTPRD-214ENST00000540109 ZFYVE16Q7Z3T8 1539 aa8□□□□□ -1.13
PTPRD-214ENST00000540109 NPM1P06748 294 aaKnown RBP eCLIP8□□□□□ -1.13
PTPRD-214ENST00000540109 DEPDC5O75140 1603 aa8□□□□□ -1.13
PTPRD-214ENST00000540109 HSP90AA2PQ14568 343 aaPredicted RBP7.99□□□□□ -1.13
PTPRD-214ENST00000540109 KDM5CP41229 1560 aa7.99□□□□□ -1.13
PTPRD-214ENST00000540109 SPAG9O60271 1321 aaKnown RBP7.98□□□□□ -1.13
PTPRD-214ENST00000540109 ATP7AQ04656 1500 aa7.98□□□□□ -1.13
PTPRD-214ENST00000540109 TET3O43151 1660 aa7.98□□□□□ -1.13
PTPRD-214ENST00000540109 ZNF326Q5BKZ1 582 aaKnown RBP7.98□□□□□ -1.13
PTPRD-214ENST00000540109 OSCARQ8IYS5 282 aa7.98□□□□□ -1.13
PTPRD-214ENST00000540109 FANCAO15360 1455 aa7.98□□□□□ -1.13
PTPRD-214ENST00000540109 USP47Q96K76 1375 aa7.97□□□□□ -1.13
PTPRD-214ENST00000540109 GPRASP1Q5JY77 1395 aa7.97□□□□□ -1.13
PTPRD-214ENST00000540109 TRPM2O94759 1503 aa7.97□□□□□ -1.13
PTPRD-214ENST00000540109 ZNF518AQ6AHZ1 1483 aa7.97□□□□□ -1.13
PTPRD-214ENST00000540109 PRDM15P57071 1507 aaPredicted RBP7.96□□□□□ -1.13
PTPRD-214ENST00000540109 ADGRL1O94910 1474 aa7.96□□□□□ -1.13
PTPRD-214ENST00000540109 UBE2Q2Q8WVN8 375 aa7.96□□□□□ -1.13
PTPRD-214ENST00000540109 NEO1Q92859 1461 aa7.96□□□□□ -1.14
PTPRD-214ENST00000540109 RSPH6AQ9H0K4 717 aa7.96□□□□□ -1.14
PTPRD-214ENST00000540109 VWDEQ8N2E2 1590 aa7.96□□□□□ -1.14
PTPRD-214ENST00000540109 WASHC2AQ641Q2 1341 aa7.96□□□□□ -1.14
PTPRD-214ENST00000540109 LMTK2Q8IWU2 1503 aa7.96□□□□□ -1.14
PTPRD-214ENST00000540109 ASXL2Q76L83 1435 aa7.96□□□□□ -1.14
PTPRD-214ENST00000540109 BCORL1Q5H9F3 1711 aa7.95□□□□□ -1.14
PTPRD-214ENST00000540109 USP35Q9P2H5 1018 aa7.95□□□□□ -1.14
PTPRD-214ENST00000540109 PRAG1Q86YV5 1406 aa7.95□□□□□ -1.14
PTPRD-214ENST00000540109 PTPRTO14522 1441 aa7.94□□□□□ -1.14
PTPRD-214ENST00000540109 TRPM1Q7Z4N2 1603 aa7.94□□□□□ -1.14
PTPRD-214ENST00000540109 DHX29Q7Z478 1369 aaKnown RBP7.94□□□□□ -1.14
PTPRD-214ENST00000540109 KCNH8Q96L42 1107 aa7.94□□□□□ -1.14
PTPRD-214ENST00000540109 WASHC2CQ9Y4E1 1318 aa7.94□□□□□ -1.14
PTPRD-214ENST00000540109 NBPF8Q3BBV2 869 aa7.94□□□□□ -1.14
PTPRD-214ENST00000540109 RNF17Q9BXT8 1623 aaKnown RBP7.93□□□□□ -1.14
PTPRD-214ENST00000540109 TRAPPC8Q9Y2L5 1435 aa7.93□□□□□ -1.14
PTPRD-214ENST00000540109 FOXD1Q16676 465 aa7.93□□□□□ -1.14
PTPRD-214ENST00000540109 KIAA1210Q9ULL0 1709 aa7.93□□□□□ -1.14
PTPRD-214ENST00000540109 MLH3Q9UHC1 1453 aa7.93□□□□□ -1.14
PTPRD-214ENST00000540109 CARD11Q9BXL7 1154 aa7.93□□□□□ -1.14
PTPRD-214ENST00000540109 CEP152O94986 1710 aa7.93□□□□□ -1.14
PTPRD-214ENST00000540109 SPHKAPQ2M3C7 1700 aa7.92□□□□□ -1.14
PTPRD-214ENST00000540109 KIF7Q2M1P5 1343 aa7.92□□□□□ -1.14
PTPRD-214ENST00000540109 CDCA8Q53HL2 280 aa7.92□□□□□ -1.14
PTPRD-214ENST00000540109 UPF2Q9HAU5 1272 aaKnown RBP7.92□□□□□ -1.14
PTPRD-214ENST00000540109 SCAPERQ9BY12 1400 aa7.92□□□□□ -1.14
PTPRD-214ENST00000540109 IL27Q8NEV9 243 aa7.92□□□□□ -1.14
PTPRD-214ENST00000540109 EIF3AQ14152 1382 aaKnown RBP7.92□□□□□ -1.14
PTPRD-214ENST00000540109 INSRP06213 1382 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms