RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 FBXO31Q5XUX0 539 aaPredicted RBP18.85■□□□□ 0.61
CLSTN3-209ENST00000539982 CPS1P31327 1500 aa18.84■□□□□ 0.61
CLSTN3-209ENST00000539982 TNRQ92752 1358 aa18.83■□□□□ 0.61
CLSTN3-209ENST00000539982 KIF3BO15066 747 aa18.83■□□□□ 0.6
CLSTN3-209ENST00000539982 ANKLE2Q86XL3 938 aa18.83■□□□□ 0.6
CLSTN3-209ENST00000539982 SHANK2Q9UPX8 1470 aa18.83■□□□□ 0.6
CLSTN3-209ENST00000539982 THEMISQ8N1K5 641 aaPredicted RBP18.81■□□□□ 0.6
CLSTN3-209ENST00000539982 NEURL4Q96JN8 1562 aa18.8■□□□□ 0.6
CLSTN3-209ENST00000539982 WASHC2CQ9Y4E1 1318 aa18.79■□□□□ 0.6
CLSTN3-209ENST00000539982 TIAM1Q13009 1591 aa18.79■□□□□ 0.6
CLSTN3-209ENST00000539982 MED1Q15648 1581 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-209ENST00000539982 POLR1AO95602 1720 aaPredicted RBP18.79■□□□□ 0.6
CLSTN3-209ENST00000539982 PZPP20742 1482 aa18.78■□□□□ 0.6
CLSTN3-209ENST00000539982 RSPH4AQ5TD94 716 aa18.78■□□□□ 0.6
CLSTN3-209ENST00000539982 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLSTN3-209ENST00000539982 MIA2Q96PC5 1412 aa18.76■□□□□ 0.59
CLSTN3-209ENST00000539982 KDM5DQ9BY66 1539 aa18.76■□□□□ 0.59
CLSTN3-209ENST00000539982 FAM135AQ9P2D6 1515 aa18.76■□□□□ 0.59
CLSTN3-209ENST00000539982 CEP162Q5TB80 1403 aa18.75■□□□□ 0.59
CLSTN3-209ENST00000539982 VWDEQ8N2E2 1590 aa18.74■□□□□ 0.59
CLSTN3-209ENST00000539982 NLRP1Q9C000 1473 aa18.74■□□□□ 0.59
CLSTN3-209ENST00000539982 EHBP1L1Q8N3D4 1523 aa18.74■□□□□ 0.59
CLSTN3-209ENST00000539982 MED14O60244 1454 aa18.73■□□□□ 0.59
CLSTN3-209ENST00000539982 NPHP4O75161 1426 aaPredicted RBP18.73■□□□□ 0.59
CLSTN3-209ENST00000539982 CCDC141Q6ZP82 1450 aa18.72■□□□□ 0.59
CLSTN3-209ENST00000539982 PHF23Q9BUL5 403 aaPredicted RBP18.72■□□□□ 0.59
CLSTN3-209ENST00000539982 UGGT1Q9NYU2 1555 aa18.72■□□□□ 0.59
CLSTN3-209ENST00000539982 DEPDC5O75140 1603 aa18.71■□□□□ 0.58
CLSTN3-209ENST00000539982 TSPY4P0CV99 314 aa18.7■□□□□ 0.58
CLSTN3-209ENST00000539982 TSPY10P0CW01 314 aa18.7■□□□□ 0.58
CLSTN3-209ENST00000539982 ALKQ9UM73 1620 aa18.68■□□□□ 0.58
CLSTN3-209ENST00000539982 CAMSAP2Q08AD1 1489 aa18.68■□□□□ 0.58
CLSTN3-209ENST00000539982 NCOA2Q15596 1464 aa18.65■□□□□ 0.58
CLSTN3-209ENST00000539982 IQGAP1P46940 1657 aa18.64■□□□□ 0.57
CLSTN3-209ENST00000539982 LRRC7Q96NW7 1537 aa18.64■□□□□ 0.57
CLSTN3-209ENST00000539982 ARHGEF5Q12774 1597 aa18.63■□□□□ 0.57
CLSTN3-209ENST00000539982 SENP3Q9H4L4 574 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-209ENST00000539982 STRCP1A6NGW2 1772 aa18.6■□□□□ 0.57
CLSTN3-209ENST00000539982 ABCC3O15438 1527 aa18.59■□□□□ 0.57
CLSTN3-209ENST00000539982 RNF17Q9BXT8 1623 aaKnown RBP18.58■□□□□ 0.56
CLSTN3-209ENST00000539982 ERVK-7P63135 1459 aa18.57■□□□□ 0.56
CLSTN3-209ENST00000539982 ZC3H13Q5T200 1668 aaKnown RBP18.57■□□□□ 0.56
CLSTN3-209ENST00000539982 SYNMO15061 1565 aa18.56■□□□□ 0.56
CLSTN3-209ENST00000539982 TXNDC2Q86VQ3 553 aa18.55■□□□□ 0.56
CLSTN3-209ENST00000539982 LTKP29376 864 aa18.54■□□□□ 0.56
CLSTN3-209ENST00000539982 RGS17Q9UGC6 210 aaPredicted RBP18.54■□□□□ 0.56
CLSTN3-209ENST00000539982 SCAF11Q99590 1463 aaKnown RBP18.53■□□□□ 0.56
CLSTN3-209ENST00000539982 MAST1Q9Y2H9 1570 aa18.53■□□□□ 0.56
CLSTN3-209ENST00000539982 EIF2AK4Q9P2K8 1649 aaKnown RBP18.52■□□□□ 0.56
CLSTN3-209ENST00000539982 UBR1Q8IWV7 1749 aa18.52■□□□□ 0.56
CLSTN3-209ENST00000539982 EID1Q9Y6B2 187 aa18.51■□□□□ 0.55
CLSTN3-209ENST00000539982 CFAP65Q6ZU64 1925 aaKnown RBP18.51■□□□□ 0.55
CLSTN3-209ENST00000539982 MROH1Q8NDA8 1641 aa18.5■□□□□ 0.55
CLSTN3-209ENST00000539982 ARHGAP23Q9P227 1491 aa18.5■□□□□ 0.55
CLSTN3-209ENST00000539982 SLIT1O75093 1534 aa18.49■□□□□ 0.55
CLSTN3-209ENST00000539982 LRRC9Q6ZRR7 1453 aa18.48■□□□□ 0.55
CLSTN3-209ENST00000539982 ARHGAP31Q2M1Z3 1444 aa18.47■□□□□ 0.55
CLSTN3-209ENST00000539982 FAM135BQ49AJ0 1406 aa18.47■□□□□ 0.55
CLSTN3-209ENST00000539982 CEP152O94986 1710 aa18.46■□□□□ 0.55
CLSTN3-209ENST00000539982 DUOX2Q9NRD8 1548 aa18.46■□□□□ 0.55
CLSTN3-209ENST00000539982 XIRP1Q702N8 1843 aaKnown RBP18.45■□□□□ 0.54
CLSTN3-209ENST00000539982 MYOM3Q5VTT5 1437 aa18.44■□□□□ 0.54
CLSTN3-209ENST00000539982 TMEM2Q9UHN6 1383 aa18.43■□□□□ 0.54
CLSTN3-209ENST00000539982 STAG3Q9UJ98 1225 aa18.43■□□□□ 0.54
CLSTN3-209ENST00000539982 KCNA6P17658 529 aa18.42■□□□□ 0.54
CLSTN3-209ENST00000539982 KANK4Q5T7N3 995 aaPredicted RBP18.42■□□□□ 0.54
CLSTN3-209ENST00000539982 POTEAQ6S8J7 498 aa18.41■□□□□ 0.54
CLSTN3-209ENST00000539982 TMEM94Q12767 1356 aa18.41■□□□□ 0.54
CLSTN3-209ENST00000539982 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.4■□□□□ 0.54
CLSTN3-209ENST00000539982 RRP7BPQ9NSQ0 103 aa18.4■□□□□ 0.54
CLSTN3-209ENST00000539982 KIF15Q9NS87 1388 aa18.4■□□□□ 0.54
CLSTN3-209ENST00000539982 VPS8Q8N3P4 1428 aa18.4■□□□□ 0.54
CLSTN3-209ENST00000539982 PRDM15P57071 1507 aaPredicted RBP18.39■□□□□ 0.54
CLSTN3-209ENST00000539982 IDI1Q13907 227 aa18.39■□□□□ 0.53
CLSTN3-209ENST00000539982 PROSER2Q86WR7 435 aaPredicted RBP18.39■□□□□ 0.53
CLSTN3-209ENST00000539982 ERBINQ96RT1 1412 aa18.39■□□□□ 0.53
CLSTN3-209ENST00000539982 PIK3C2BO00750 1634 aa18.38■□□□□ 0.53
CLSTN3-209ENST00000539982 SLC26A8Q96RN1 970 aa18.37■□□□□ 0.53
CLSTN3-209ENST00000539982 KANK1Q14678 1352 aa18.37■□□□□ 0.53
CLSTN3-209ENST00000539982 MAP3K1Q13233 1512 aa18.37■□□□□ 0.53
CLSTN3-209ENST00000539982 EFCAB6Q5THR3 1501 aa18.35■□□□□ 0.53
CLSTN3-209ENST00000539982 ABCC5O15440 1437 aa18.35■□□□□ 0.53
CLSTN3-209ENST00000539982 RBM33Q96EV2 1170 aaKnown RBP18.35■□□□□ 0.53
CLSTN3-209ENST00000539982 TET3O43151 1660 aa18.34■□□□□ 0.53
CLSTN3-209ENST00000539982 KDM5AP29375 1690 aaKnown RBP18.34■□□□□ 0.53
CLSTN3-209ENST00000539982 ROBO1Q9Y6N7 1651 aa18.33■□□□□ 0.52
CLSTN3-209ENST00000539982 SLAIN2Q9P270 581 aa18.31■□□□□ 0.52
CLSTN3-209ENST00000539982 LMTK2Q8IWU2 1503 aa18.3■□□□□ 0.52
CLSTN3-209ENST00000539982 MSH6P52701 1360 aa18.3■□□□□ 0.52
CLSTN3-209ENST00000539982 BCANQ96GW7 911 aa18.29■□□□□ 0.52
CLSTN3-209ENST00000539982 SLC52A1Q9NWF4 448 aa18.29■□□□□ 0.52
CLSTN3-209ENST00000539982 CROCC2H7BZ55 1655 aa18.28■□□□□ 0.52
CLSTN3-209ENST00000539982 NKTRP30414 1462 aaKnown RBP18.28■□□□□ 0.52
CLSTN3-209ENST00000539982 LOC105371045A0A1W2PR82 267 aa18.28■□□□□ 0.52
CLSTN3-209ENST00000539982 DAPK1P53355 1430 aa18.28■□□□□ 0.52
CLSTN3-209ENST00000539982 NOS1P29475 1434 aa18.27■□□□□ 0.52
CLSTN3-209ENST00000539982 ANKRD30AQ9BXX3 1397 aa18.27■□□□□ 0.51
CLSTN3-209ENST00000539982 JCADQ9P266 1359 aa18.27■□□□□ 0.51
CLSTN3-209ENST00000539982 PTPN23Q9H3S7 1636 aa18.27■□□□□ 0.51
CLSTN3-209ENST00000539982 CHIC2Q9UKJ5 165 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms