RNA–Protein interactions for RNA: ENST00000539097.2

HIF1A-204, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-204ENST00000539097 FAM117AQ9C073 453 aa2.15□□□□□ -2.07
HIF1A-204ENST00000539097 RNF166Q96A37 237 aaPredicted RBP2.15□□□□□ -2.07
HIF1A-204ENST00000539097 C2orf72A6NCS6 295 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 FLIIQ13045 1269 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 DDX27Q96GQ7 796 aaKnown RBP2.14□□□□□ -2.07
HIF1A-204ENST00000539097 UBTFP17480 764 aaKnown RBP2.14□□□□□ -2.07
HIF1A-204ENST00000539097 NEUROD2Q15784 382 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 MICALL2Q8IY33 904 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 IL27Q8NEV9 243 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 PTCD2Q8WV60 388 aaKnown RBP2.14□□□□□ -2.07
HIF1A-204ENST00000539097 FBXW7Q969H0 707 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 TMUB1Q9BVT8 246 aa2.14□□□□□ -2.07
HIF1A-204ENST00000539097 LCE2BO14633 110 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 HOXB3P14651 431 aaPredicted RBP2.13□□□□□ -2.07
HIF1A-204ENST00000539097 MKRN3Q13064 507 aaKnown RBP2.13□□□□□ -2.07
HIF1A-204ENST00000539097 ZNF592Q92610 1267 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 ZNF316A6NFI3 1004 aaPredicted RBP2.13□□□□□ -2.07
HIF1A-204ENST00000539097 C3orf80F5H4A9 247 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 PHF14O94880 888 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 PPP1R15BQ5SWA1 713 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 TTC13Q8NBP0 860 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 OCEL1Q9H607 264 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 CDHR5Q9HBB8 845 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 A6NJR5 290 aa2.13□□□□□ -2.07
HIF1A-204ENST00000539097 ARID3CA6NKF2 412 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 APBB1O00213 710 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 DDX12PQ92771 950 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 UPF1Q92900 1129 aaKnown RBP eCLIP2.12□□□□□ -2.07
HIF1A-204ENST00000539097 OSBPP22059 807 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 KDM4CQ9H3R0 1056 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 NPDC1Q9NQX5 325 aaPredicted RBP2.12□□□□□ -2.07
HIF1A-204ENST00000539097 TRIM66O15016 1216 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 OXER1Q8TDS5 423 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 DDRGK1Q96HY6 314 aa2.12□□□□□ -2.07
HIF1A-204ENST00000539097 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP2.12□□□□□ -2.075e-7■■□□□ 12.3
HIF1A-204ENST00000539097 MS4A1P11836 297 aa2.11□□□□□ -2.07
HIF1A-204ENST00000539097 PARP9Q8IXQ6 854 aa2.11□□□□□ -2.07
HIF1A-204ENST00000539097 TSR1Q2NL82 804 aaKnown RBP2.11□□□□□ -2.07
HIF1A-204ENST00000539097 KHSRPQ92945 711 aaKnown RBP eCLIP2.11□□□□□ -2.074e-10■■■□□ 16.5
HIF1A-204ENST00000539097 RSPH6AQ9H0K4 717 aa2.11□□□□□ -2.07
HIF1A-204ENST00000539097 GRXCR2A6NFK2 248 aa2.1□□□□□ -2.07
HIF1A-204ENST00000539097 FCHSD2O94868 740 aa2.1□□□□□ -2.07
HIF1A-204ENST00000539097 PDE4DQ08499 809 aa2.1□□□□□ -2.07
HIF1A-204ENST00000539097 MAP2K5Q13163 448 aa2.1□□□□□ -2.07
HIF1A-204ENST00000539097 PLPP6Q8IY26 295 aa2.1□□□□□ -2.07
HIF1A-204ENST00000539097 CCDC102AQ96A19 550 aa2.1□□□□□ -2.07
HIF1A-204ENST00000539097 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP2.09□□□□□ -2.07
HIF1A-204ENST00000539097 LZTS3O60299 673 aaPredicted RBP2.09□□□□□ -2.07
HIF1A-204ENST00000539097 OATP04181 439 aa2.09□□□□□ -2.07
HIF1A-204ENST00000539097 HIC1Q14526 733 aa2.09□□□□□ -2.07
HIF1A-204ENST00000539097 GPIHBP1Q8IV16 184 aa2.09□□□□□ -2.07
HIF1A-204ENST00000539097 HRCP23327 699 aa2.09□□□□□ -2.07
HIF1A-204ENST00000539097 C14orf37Q86TY3 774 aa2.09□□□□□ -2.08
HIF1A-204ENST00000539097 ZC3H4Q9UPT8 1303 aaKnown RBP2.09□□□□□ -2.08
HIF1A-204ENST00000539097 HOXB1P14653 301 aaPredicted RBP2.08□□□□□ -2.08
HIF1A-204ENST00000539097 LAPTM4BQ86VI4 370 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 ZNF687Q8N1G0 1237 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 CLUAP1Q96AJ1 413 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 POM121Q96HA1 1249 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 USP46P62068 366 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 GOLGA2Q08379 1002 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 PTGDRQ13258 359 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 TMEM259Q4ZIN3 620 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 SH3D19Q5HYK7 790 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 PRPF38BQ5VTL8 546 aaKnown RBP2.08□□□□□ -2.08
HIF1A-204ENST00000539097 PPP2R2DQ66LE6 453 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 TMC2Q8TDI7 906 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 JPH4Q96JJ6 628 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 PBX2P40425 430 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 KRTAP4-12Q9BQ66 201 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 BOLA1Q9Y3E2 137 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 FAM198AQ9UFP1 575 aa2.08□□□□□ -2.08
HIF1A-204ENST00000539097 SOX11P35716 441 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 TYW1BQ6NUM6 668 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 HCSTQ9UBK5 93 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 IRF6O14896 467 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 STK17AQ9UEE5 414 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 G3V3G9 751 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 DOK7Q18PE1 504 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 PROCA1Q8NCQ7 364 aaPredicted RBP2.07□□□□□ -2.08
HIF1A-204ENST00000539097 HS3ST6Q96QI5 342 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 PRM3Q9NNZ6 103 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 PCDHGA10Q9Y5H3 936 aa2.07□□□□□ -2.08
HIF1A-204ENST00000539097 GPR37L1O60883 481 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 ARID3AQ99856 593 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 PPP1R15AO75807 674 aaPredicted RBP2.06□□□□□ -2.08
HIF1A-204ENST00000539097 TRIM26Q12899 539 aaPredicted RBP2.06□□□□□ -2.08
HIF1A-204ENST00000539097 MYT1LQ9UL68 1186 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 NUTM2FA1L443 756 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 TK2O00142 265 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 RSPH4AQ5TD94 716 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 GIGYF2Q6Y7W6 1299 aaKnown RBP2.06□□□□□ -2.08
HIF1A-204ENST00000539097 HLA-CQ95604 372 aa2.06□□□□□ -2.08
HIF1A-204ENST00000539097 SALL2Q9Y467 1007 aaPredicted RBP2.06□□□□□ -2.08
HIF1A-204ENST00000539097 SKIV2LQ15477 1246 aaKnown RBP2.05□□□□□ -2.08
HIF1A-204ENST00000539097 PRR14Q9BWN1 585 aa2.05□□□□□ -2.08
HIF1A-204ENST00000539097 CARNS1A5YM72 827 aa2.05□□□□□ -2.08
HIF1A-204ENST00000539097 CLCN1P35523 988 aa2.05□□□□□ -2.08
HIF1A-204ENST00000539097 PNMA1Q8ND90 353 aa2.05□□□□□ -2.08
HIF1A-204ENST00000539097 RBM33Q96EV2 1170 aaKnown RBP2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms