RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 MAPKBP1O60336 1514 aa14.17□□□□□ -0.14
CLSTN3-207ENST00000537408 DISP1Q96F81 1524 aa14.17□□□□□ -0.14
CLSTN3-207ENST00000537408 ATP10BO94823 1461 aa14.16□□□□□ -0.14
CLSTN3-207ENST00000537408 FYCO1Q9BQS8 1478 aa14.16□□□□□ -0.14
CLSTN3-207ENST00000537408 DCAF11Q8TEB1 546 aa14.16□□□□□ -0.14
CLSTN3-207ENST00000537408 ABCC10Q5T3U5 1492 aa14.16□□□□□ -0.14
CLSTN3-207ENST00000537408 SMG6Q86US8 1419 aaKnown RBP14.16□□□□□ -0.14
CLSTN3-207ENST00000537408 ANKRD30AQ9BXX3 1397 aa14.16□□□□□ -0.14
CLSTN3-207ENST00000537408 EID1Q9Y6B2 187 aa14.15□□□□□ -0.14
CLSTN3-207ENST00000537408 EPRSP07814 1512 aaKnown RBP14.15□□□□□ -0.14
CLSTN3-207ENST00000537408 PDCL3Q9H2J4 239 aa14.15□□□□□ -0.14
CLSTN3-207ENST00000537408 CLCN1P35523 988 aa14.15□□□□□ -0.14
CLSTN3-207ENST00000537408 CTTNBP2Q8WZ74 1663 aa14.15□□□□□ -0.14
CLSTN3-207ENST00000537408 SETD5Q9C0A6 1442 aa14.15□□□□□ -0.14
CLSTN3-207ENST00000537408 ADGRL1O94910 1474 aa14.14□□□□□ -0.15
CLSTN3-207ENST00000537408 TPM2P07951 284 aa14.14□□□□□ -0.15
CLSTN3-207ENST00000537408 FANCAO15360 1455 aa14.14□□□□□ -0.15
CLSTN3-207ENST00000537408 NCLP19338 710 aaKnown RBP14.12□□□□□ -0.15
CLSTN3-207ENST00000537408 CENPJQ9HC77 1338 aaPredicted RBP14.12□□□□□ -0.15
CLSTN3-207ENST00000537408 RAPGEF6Q8TEU7 1601 aa14.12□□□□□ -0.15
CLSTN3-207ENST00000537408 ERCC6L2Q5T890 1561 aa14.11□□□□□ -0.15
CLSTN3-207ENST00000537408 FRAT2O75474 233 aaPredicted RBP14.11□□□□□ -0.15
CLSTN3-207ENST00000537408 CDK13Q14004 1512 aaKnown RBP14.1□□□□□ -0.15
CLSTN3-207ENST00000537408 DMRT2Q9Y5R5 561 aa14.09□□□□□ -0.15
CLSTN3-207ENST00000537408 SLC4A1APQ9BWU0 796 aaKnown RBP14.09□□□□□ -0.15
CLSTN3-207ENST00000537408 KDM5BQ9UGL1 1544 aa14.09□□□□□ -0.15
CLSTN3-207ENST00000537408 KIF14Q15058 1648 aa14.07□□□□□ -0.16
CLSTN3-207ENST00000537408 RNF123Q5XPI4 1314 aa14.07□□□□□ -0.16
CLSTN3-207ENST00000537408 SLC4A3P48751 1232 aa14.07□□□□□ -0.16
CLSTN3-207ENST00000537408 GOLGA6L3A6NEY3 463 aa14.06□□□□□ -0.16
CLSTN3-207ENST00000537408 BCL11BQ9C0K0 894 aaPredicted RBP14.06□□□□□ -0.16
CLSTN3-207ENST00000537408 MYOM3Q5VTT5 1437 aa14.06□□□□□ -0.16
CLSTN3-207ENST00000537408 NUP153P49790 1475 aaKnown RBP14.05□□□□□ -0.16
CLSTN3-207ENST00000537408 PLCH2O75038 1416 aa14.04□□□□□ -0.16
CLSTN3-207ENST00000537408 MAP7D2Q96T17 732 aa14.04□□□□□ -0.16
CLSTN3-207ENST00000537408 PRKRIP1Q9H875 184 aaPredicted RBP14.04□□□□□ -0.16
CLSTN3-207ENST00000537408 RGS3P49796 1198 aa14.03□□□□□ -0.16
CLSTN3-207ENST00000537408 KDM6BO15054 1643 aa14.03□□□□□ -0.16
CLSTN3-207ENST00000537408 NEO1Q92859 1461 aa14.03□□□□□ -0.16
CLSTN3-207ENST00000537408 CNTLNQ9NXG0 1405 aa14.03□□□□□ -0.16
CLSTN3-207ENST00000537408 TRIM44Q96DX7 344 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-207ENST00000537408 ARXQ96QS3 562 aa14.01□□□□□ -0.17
CLSTN3-207ENST00000537408 EHBP1L1Q8N3D4 1523 aa14.01□□□□□ -0.17
CLSTN3-207ENST00000537408 PPP6R1Q9UPN7 881 aa14.01□□□□□ -0.17
CLSTN3-207ENST00000537408 TAF7LQ5H9L4 462 aa14.01□□□□□ -0.17
CLSTN3-207ENST00000537408 THEMISQ8N1K5 641 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-207ENST00000537408 ZNF644Q9H582 1327 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-207ENST00000537408 SENP3Q9H4L4 574 aaPredicted RBP14□□□□□ -0.17
CLSTN3-207ENST00000537408 TNNT2P45379 298 aaPredicted RBP14□□□□□ -0.17
CLSTN3-207ENST00000537408 CCDC184Q52MB2 194 aa14□□□□□ -0.17
CLSTN3-207ENST00000537408 NCOA2Q15596 1464 aa13.99□□□□□ -0.17
CLSTN3-207ENST00000537408 EIF4G2P78344 907 aaKnown RBP eCLIP13.98□□□□□ -0.171e-6■■■■■ 27.1
CLSTN3-207ENST00000537408 BECN1Q14457 450 aa13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 POGKQ9P215 609 aa13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 PRDM4Q9UKN5 801 aa13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 TSPOAP1O95153 1857 aa13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 CANXP27824 592 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 RRP1P56182 461 aaKnown RBP13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 EXOC6Q8TAG9 804 aa13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 ZNF518AQ6AHZ1 1483 aa13.98□□□□□ -0.17
CLSTN3-207ENST00000537408 SHROOM2Q13796 1616 aa13.97□□□□□ -0.17
CLSTN3-207ENST00000537408 BBXQ8WY36 941 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-207ENST00000537408 HSPA5P11021 654 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-207ENST00000537408 ABCA8O94911 1581 aa13.95□□□□□ -0.18
CLSTN3-207ENST00000537408 NUP155O75694 1391 aa13.95□□□□□ -0.18
CLSTN3-207ENST00000537408 KIF15Q9NS87 1388 aa13.95□□□□□ -0.18
CLSTN3-207ENST00000537408 ESPNB1AK53 854 aa13.95□□□□□ -0.18
CLSTN3-207ENST00000537408 KDM2AQ9Y2K7 1162 aa13.94□□□□□ -0.18
CLSTN3-207ENST00000537408 LRRC9Q6ZRR7 1453 aa13.94□□□□□ -0.18
CLSTN3-207ENST00000537408 ANKLE2Q86XL3 938 aa13.94□□□□□ -0.18
CLSTN3-207ENST00000537408 MYH16Q9H6N6 1097 aa13.94□□□□□ -0.18
CLSTN3-207ENST00000537408 FAM161AQ3B820 660 aa13.93□□□□□ -0.18
CLSTN3-207ENST00000537408 SMAP1Q8IYB5 467 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-207ENST00000537408 MIA2Q96PC5 1412 aa13.93□□□□□ -0.18
CLSTN3-207ENST00000537408 MTERF4Q7Z6M4 381 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-207ENST00000537408 PCF11O94913 1555 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-207ENST00000537408 MRE11P49959 708 aa13.92□□□□□ -0.18
CLSTN3-207ENST00000537408 RGL3Q3MIN7 710 aa13.92□□□□□ -0.18
CLSTN3-207ENST00000537408 ZCCHC11Q5TAX3 1644 aaKnown RBP13.91□□□□□ -0.18
CLSTN3-207ENST00000537408 ADCY10Q96PN6 1610 aa13.91□□□□□ -0.18
CLSTN3-207ENST00000537408 MAGI3Q5TCQ9 1506 aa13.91□□□□□ -0.18
CLSTN3-207ENST00000537408 CEBPAP49715 358 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-207ENST00000537408 NAP1L2Q9ULW6 460 aaPredicted RBP13.91□□□□□ -0.18
CLSTN3-207ENST00000537408 XRCC6P12956 609 aaKnown RBP eCLIP13.91□□□□□ -0.18
CLSTN3-207ENST00000537408 RCAN3Q9UKA8 241 aa13.9□□□□□ -0.18
CLSTN3-207ENST00000537408 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLSTN3-207ENST00000537408 CCDC141Q6ZP82 1450 aa13.9□□□□□ -0.18
CLSTN3-207ENST00000537408 HAP1P54257 671 aaPredicted RBP13.9□□□□□ -0.18
CLSTN3-207ENST00000537408 SAMD9Q5K651 1589 aa13.89□□□□□ -0.19
CLSTN3-207ENST00000537408 KIAA1211Q6ZU35 1233 aa13.88□□□□□ -0.19
CLSTN3-207ENST00000537408 CFAP74Q9C0B2 1584 aa13.88□□□□□ -0.19
CLSTN3-207ENST00000537408 ATP10AO60312 1499 aa13.88□□□□□ -0.19
CLSTN3-207ENST00000537408 FGD6Q6ZV73 1430 aa13.88□□□□□ -0.19
CLSTN3-207ENST00000537408 C9orf84Q5VXU9 1444 aa13.87□□□□□ -0.19
CLSTN3-207ENST00000537408 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.87□□□□□ -0.19
CLSTN3-207ENST00000537408 SUPT6HQ7KZ85 1726 aaKnown RBP13.86□□□□□ -0.19
CLSTN3-207ENST00000537408 TXNDC2Q86VQ3 553 aa13.86□□□□□ -0.19
CLSTN3-207ENST00000537408 ISY1Q9ULR0 285 aaKnown RBP13.86□□□□□ -0.19
CLSTN3-207ENST00000537408 ANP32BQ92688 251 aaKnown RBP13.86□□□□□ -0.19
CLSTN3-207ENST00000537408 KIAA1107Q9UPP5 1409 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms