RNA–Protein interactions for RNA: ENST00000527920.5

SSSCA1-205, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3 BASIC

Gene SSSCA1, Length 806 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-205ENST00000527920 PTPRKQ15262 1439 aa51.29■■■■■ 5.8
SSSCA1-205ENST00000527920 EIF2AK4Q9P2K8 1649 aaKnown RBP51.28■■■■■ 5.8
SSSCA1-205ENST00000527920 DUOX2Q9NRD8 1548 aa51.27■■■■■ 5.8
SSSCA1-205ENST00000527920 RNF17Q9BXT8 1623 aaKnown RBP51.25■■■■■ 5.79
SSSCA1-205ENST00000527920 KIF15Q9NS87 1388 aa51.2■■■■■ 5.79
SSSCA1-205ENST00000527920 WASHC2CQ9Y4E1 1318 aa51.19■■■■■ 5.79
SSSCA1-205ENST00000527920 ERBINQ96RT1 1412 aa51.14■■■■■ 5.78
SSSCA1-205ENST00000527920 PZPP20742 1482 aa51.13■■■■■ 5.78
SSSCA1-205ENST00000527920 ANKRD30AQ9BXX3 1397 aa51.09■■■■■ 5.77
SSSCA1-205ENST00000527920 MYO3AQ8NEV4 1616 aa51.08■■■■■ 5.77
SSSCA1-205ENST00000527920 RRP7BPQ9NSQ0 103 aa51.07■■■■■ 5.77
SSSCA1-205ENST00000527920 MROH1Q8NDA8 1641 aa51.06■■■■■ 5.76
SSSCA1-205ENST00000527920 ZNF142P52746 1687 aaPredicted RBP51.05■■■■■ 5.76
SSSCA1-205ENST00000527920 ZC3H13Q5T200 1668 aaKnown RBP51.05■■■■■ 5.76
SSSCA1-205ENST00000527920 STRCQ7RTU9 1775 aa51.05■■■■■ 5.76
SSSCA1-205ENST00000527920 DMRT2Q9Y5R5 561 aa51.05■■■■■ 5.76
SSSCA1-205ENST00000527920 ABCC3O15438 1527 aa51.04■■■■■ 5.76
SSSCA1-205ENST00000527920 FAM50AQ14320 339 aaKnown RBP51.04■■■■■ 5.76
SSSCA1-205ENST00000527920 NCOA1Q15788 1441 aa51.03■■■■■ 5.76
SSSCA1-205ENST00000527920 ADGRL2O95490 1459 aa51.02■■■■■ 5.76
SSSCA1-205ENST00000527920 CEP170BQ9Y4F5 1589 aaPredicted RBP51■■■■■ 5.75
SSSCA1-205ENST00000527920 CHIC2Q9UKJ5 165 aa50.97■■■■■ 5.75
SSSCA1-205ENST00000527920 TNRQ92752 1358 aa50.96■■■■■ 5.75
SSSCA1-205ENST00000527920 PRDM15P57071 1507 aaPredicted RBP50.96■■■■■ 5.75
SSSCA1-205ENST00000527920 FBXO31Q5XUX0 539 aaPredicted RBP50.94■■■■■ 5.75
SSSCA1-205ENST00000527920 A2ML1A8K2U0 1454 aa50.93■■■■■ 5.74
SSSCA1-205ENST00000527920 CAMSAP1Q5T5Y3 1602 aa50.92■■■■■ 5.74
SSSCA1-205ENST00000527920 PTPRTO14522 1441 aa50.92■■■■■ 5.74
SSSCA1-205ENST00000527920 PLA2R1Q13018 1463 aa50.9■■■■■ 5.74
SSSCA1-205ENST00000527920 DEPDC5O75140 1603 aa50.88■■■■■ 5.74
SSSCA1-205ENST00000527920 ILDR1Q86SU0 546 aaPredicted RBP50.86■■■■■ 5.73
SSSCA1-205ENST00000527920 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP50.82■■■■■ 5.73
SSSCA1-205ENST00000527920 NLRP1Q9C000 1473 aa50.82■■■■■ 5.73
SSSCA1-205ENST00000527920 SPATA31D1Q6ZQQ2 1576 aa50.8■■■■■ 5.72
SSSCA1-205ENST00000527920 CEP152O94986 1710 aa50.79■■■■■ 5.72
SSSCA1-205ENST00000527920 ARHGAP31Q2M1Z3 1444 aa50.79■■■■■ 5.72
SSSCA1-205ENST00000527920 KANK1Q14678 1352 aa50.77■■■■■ 5.72
SSSCA1-205ENST00000527920 ERVK-7P63135 1459 aa50.76■■■■■ 5.72
SSSCA1-205ENST00000527920 PKD2Q13563 968 aa50.75■■■■■ 5.71
SSSCA1-205ENST00000527920 PPARGC1BQ86YN6 1023 aaKnown RBP50.73■■■■■ 5.71
SSSCA1-205ENST00000527920 ANKRD50Q9ULJ7 1429 aa50.71■■■■■ 5.71
SSSCA1-205ENST00000527920 ROCK1Q13464 1354 aa50.71■■■■■ 5.71
SSSCA1-205ENST00000527920 VWDEQ8N2E2 1590 aa50.71■■■■■ 5.71
SSSCA1-205ENST00000527920 LMTK2Q8IWU2 1503 aa50.7■■■■■ 5.71
SSSCA1-205ENST00000527920 GRWD1Q9BQ67 446 aaKnown RBP eCLIP50.69■■■■■ 5.71
SSSCA1-205ENST00000527920 FBXO41Q8TF61 875 aa50.67■■■■■ 5.7
SSSCA1-205ENST00000527920 NCKAP5LQ9HCH0 1330 aa50.65■■■■■ 5.7
SSSCA1-205ENST00000527920 UGGT1Q9NYU2 1555 aa50.6■■■■■ 5.69
SSSCA1-205ENST00000527920 CERKQ8TCT0 537 aa50.6■■■■■ 5.69
SSSCA1-205ENST00000527920 THEMISQ8N1K5 641 aaPredicted RBP50.59■■■■■ 5.69
SSSCA1-205ENST00000527920 RRBP1Q9P2E9 1410 aaKnown RBP50.56■■■■■ 5.68
SSSCA1-205ENST00000527920 EFCAB6Q5THR3 1501 aa50.49■■■■■ 5.67
SSSCA1-205ENST00000527920 LTBP4Q8N2S1 1624 aa50.44■■■■■ 5.67
SSSCA1-205ENST00000527920 ANKLE2Q86XL3 938 aa50.44■■■■■ 5.67
SSSCA1-205ENST00000527920 POLR1AO95602 1720 aaPredicted RBP50.44■■■■■ 5.66
SSSCA1-205ENST00000527920 UNC13BO14795 1591 aa50.43■■■■■ 5.66
SSSCA1-205ENST00000527920 ITGAEP38570 1179 aa50.42■■■■■ 5.66
SSSCA1-205ENST00000527920 CFAP65Q6ZU64 1925 aaKnown RBP50.42■■■■■ 5.66
SSSCA1-205ENST00000527920 NEURL4Q96JN8 1562 aa50.42■■■■■ 5.66
SSSCA1-205ENST00000527920 RPRD2Q5VT52 1461 aaKnown RBP50.39■■■■■ 5.66
SSSCA1-205ENST00000527920 NOS1P29475 1434 aa50.36■■■■■ 5.65
SSSCA1-205ENST00000527920 MED14O60244 1454 aa50.35■■■■■ 5.65
SSSCA1-205ENST00000527920 UBR1Q8IWV7 1749 aa50.34■■■■■ 5.65
SSSCA1-205ENST00000527920 TET3O43151 1660 aa50.31■■■■■ 5.65
SSSCA1-205ENST00000527920 IQSEC2Q5JU85 1478 aa50.29■■■■■ 5.64
SSSCA1-205ENST00000527920 ZNF335Q9H4Z2 1342 aaPredicted RBP50.29■■■■■ 5.64
SSSCA1-205ENST00000527920 SYNMO15061 1565 aa50.27■■■■■ 5.64
SSSCA1-205ENST00000527920 NPHP4O75161 1426 aaPredicted RBP50.26■■■■■ 5.64
SSSCA1-205ENST00000527920 ARHGAP23Q9P227 1491 aa50.24■■■■■ 5.63
SSSCA1-205ENST00000527920 SLIT1O75093 1534 aa50.24■■■■■ 5.63
SSSCA1-205ENST00000527920 KDM5AP29375 1690 aaKnown RBP50.23■■■■■ 5.63
SSSCA1-205ENST00000527920 PIK3C2BO00750 1634 aa50.22■■■■■ 5.63
SSSCA1-205ENST00000527920 GCC2Q8IWJ2 1684 aa50.22■■■■■ 5.63
SSSCA1-205ENST00000527920 IQGAP3Q86VI3 1631 aa50.22■■■■■ 5.63
SSSCA1-205ENST00000527920 IDI1Q13907 227 aa50.2■■■■■ 5.63
SSSCA1-205ENST00000527920 SLC52A1Q9NWF4 448 aa50.2■■■■■ 5.63
SSSCA1-205ENST00000527920 SCAF11Q99590 1463 aaKnown RBP50.16■■■■■ 5.62
SSSCA1-205ENST00000527920 NUP155O75694 1391 aa50.15■■■■■ 5.62
SSSCA1-205ENST00000527920 IQGAP1P46940 1657 aa50.13■■■■■ 5.62
SSSCA1-205ENST00000527920 TMEM2Q9UHN6 1383 aa50.12■■■■■ 5.61
SSSCA1-205ENST00000527920 STAG3Q9UJ98 1225 aa50.11■■■■■ 5.61
SSSCA1-205ENST00000527920 NAIPQ13075 1403 aa50.09■■■■■ 5.61
SSSCA1-205ENST00000527920 ADGRB3O60242 1522 aa50.08■■■■■ 5.61
SSSCA1-205ENST00000527920 EID1Q9Y6B2 187 aa50.06■■■■■ 5.6
SSSCA1-205ENST00000527920 LTKP29376 864 aa50.05■■■■■ 5.6
SSSCA1-205ENST00000527920 TXNDC2Q86VQ3 553 aa50.05■■■■■ 5.6
SSSCA1-205ENST00000527920 E9PCH4 1651 aa50.05■■■■■ 5.6
SSSCA1-205ENST00000527920 CPS1P31327 1500 aa50.04■■■■■ 5.6
SSSCA1-205ENST00000527920 HFM1A2PYH4 1435 aa50.02■■■■■ 5.6
SSSCA1-205ENST00000527920 TMEM131LA2VDJ0 1609 aa49.85■■■■■ 5.57
SSSCA1-205ENST00000527920 ZFYVE9O95405 1425 aa49.8■■■■■ 5.56
SSSCA1-205ENST00000527920 HDGFP51858 240 aaKnown RBP49.74■■■■■ 5.55
SSSCA1-205ENST00000527920 RIMS2Q9UQ26 1411 aa49.72■■■■■ 5.55
SSSCA1-205ENST00000527920 UBAP1LF5GYI3 381 aa49.72■■■■■ 5.55
SSSCA1-205ENST00000527920 STRCP1A6NGW2 1772 aa49.71■■■■■ 5.55
SSSCA1-205ENST00000527920 MYO5BQ9ULV0 1848 aa49.7■■■■■ 5.55
SSSCA1-205ENST00000527920 SPHKAPQ2M3C7 1700 aa49.7■■■■■ 5.55
SSSCA1-205ENST00000527920 LRRC7Q96NW7 1537 aa49.67■■■■■ 5.54
SSSCA1-205ENST00000527920 PLEKHG1Q9ULL1 1385 aa49.66■■■■■ 5.54
SSSCA1-205ENST00000527920 CHGAP10645 457 aaKnown RBP49.66■■■■■ 5.54
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms