RNA–Protein interactions for RNA: ENST00000524384.5

PTP4A2-208, Transcript of protein tyrosine phosphatase type IVA, member 2, human

TSL 5

Gene PTP4A2, Length 663 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTP4A2-208	ENST00000524384	PIP4K2B	P78356	416 aa		13.96	□□□□□ -0.17
PTP4A2-208	ENST00000524384	MYT1L	Q9UL68	1186 aa		13.96	□□□□□ -0.17
PTP4A2-208	ENST00000524384	CDK13	Q14004	1512 aa	Known RBP	13.95	□□□□□ -0.18
PTP4A2-208	ENST00000524384	PLA2R1	Q13018	1463 aa		13.95	□□□□□ -0.18
PTP4A2-208	ENST00000524384	RANGAP1	P46060	587 aa	Predicted RBP	13.94	□□□□□ -0.18
PTP4A2-208	ENST00000524384	PKD2	Q13563	968 aa		13.94	□□□□□ -0.18
PTP4A2-208	ENST00000524384	TCOF1	Q13428	1488 aa	Known RBP	13.93	□□□□□ -0.18
PTP4A2-208	ENST00000524384	TOM1	O60784	492 aa		13.93	□□□□□ -0.18
PTP4A2-208	ENST00000524384	MLH3	Q9UHC1	1453 aa		13.93	□□□□□ -0.18
PTP4A2-208	ENST00000524384	ZNF142	P52746	1687 aa	Predicted RBP	13.92	□□□□□ -0.18
PTP4A2-208	ENST00000524384	MROH2A	A6NES4	1674 aa		13.91	□□□□□ -0.18
PTP4A2-208	ENST00000524384	ARHGAP5	Q13017	1502 aa		13.9	□□□□□ -0.18
PTP4A2-208	ENST00000524384	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.9	□□□□□ -0.18
PTP4A2-208	ENST00000524384	C19orf67	A6NJJ6	358 aa		13.9	□□□□□ -0.18
PTP4A2-208	ENST00000524384	MYO3A	Q8NEV4	1616 aa		13.9	□□□□□ -0.19
PTP4A2-208	ENST00000524384	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.88	□□□□□ -0.19
PTP4A2-208	ENST00000524384	ZMYM3	Q14202	1370 aa		13.88	□□□□□ -0.19
PTP4A2-208	ENST00000524384	KIF14	Q15058	1648 aa		13.88	□□□□□ -0.19
PTP4A2-208	ENST00000524384	CPS1	P31327	1500 aa		13.88	□□□□□ -0.19
PTP4A2-208	ENST00000524384	KIDINS220	Q9ULH0	1771 aa		13.84	□□□□□ -0.19
PTP4A2-208	ENST00000524384	ALK	Q9UM73	1620 aa		13.83	□□□□□ -0.2
PTP4A2-208	ENST00000524384	PTPRK	Q15262	1439 aa		13.83	□□□□□ -0.2
PTP4A2-208	ENST00000524384	SHANK2	Q9UPX8	1470 aa		13.83	□□□□□ -0.2
PTP4A2-208	ENST00000524384	ABCC1	P33527	1531 aa		13.82	□□□□□ -0.2
PTP4A2-208	ENST00000524384	CDC42BPB	Q9Y5S2	1711 aa		13.81	□□□□□ -0.2
PTP4A2-208	ENST00000524384	RGS17	Q9UGC6	210 aa	Predicted RBP	13.81	□□□□□ -0.2
PTP4A2-208	ENST00000524384	CDK11A	Q9UQ88	783 aa	Predicted RBP	13.81	□□□□□ -0.2
PTP4A2-208	ENST00000524384	CLTC	Q00610	1675 aa	Known RBP	13.81	□□□□□ -0.2
PTP4A2-208	ENST00000524384	ITSN2	Q9NZM3	1697 aa		13.81	□□□□□ -0.2
PTP4A2-208	ENST00000524384	TRO	Q12816	1431 aa	Predicted RBP	13.8	□□□□□ -0.2
PTP4A2-208	ENST00000524384	NEURL4	Q96JN8	1562 aa		13.79	□□□□□ -0.2
PTP4A2-208	ENST00000524384	POLR1A	O95602	1720 aa	Predicted RBP	13.78	□□□□□ -0.2
PTP4A2-208	ENST00000524384	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.78	□□□□□ -0.2
PTP4A2-208	ENST00000524384	CLIP1	P30622	1438 aa		13.78	□□□□□ -0.2
PTP4A2-208	ENST00000524384	A2ML1	A8K2U0	1454 aa		13.78	□□□□□ -0.2
PTP4A2-208	ENST00000524384	DNMT1	P26358	1616 aa	Known RBP	13.78	□□□□□ -0.2
PTP4A2-208	ENST00000524384	SPDYE4	A6NLX3	237 aa		13.77	□□□□□ -0.21
PTP4A2-208	ENST00000524384	PREX2	Q70Z35	1606 aa		13.77	□□□□□ -0.21
PTP4A2-208	ENST00000524384	VWDE	Q8N2E2	1590 aa		13.76	□□□□□ -0.21
PTP4A2-208	ENST00000524384	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.76	□□□□□ -0.21
PTP4A2-208	ENST00000524384	SAMD9L	Q8IVG5	1584 aa		13.75	□□□□□ -0.21
PTP4A2-208	ENST00000524384	GABBR2	O75899	941 aa		13.74	□□□□□ -0.21
PTP4A2-208	ENST00000524384	FMN1	Q68DA7	1419 aa		13.73	□□□□□ -0.21
PTP4A2-208	ENST00000524384	STAG3	Q9UJ98	1225 aa		13.73	□□□□□ -0.21
PTP4A2-208	ENST00000524384	PLXNC1	O60486	1568 aa		13.72	□□□□□ -0.21
PTP4A2-208	ENST00000524384	CD44	P16070	742 aa	Known RBP	13.72	□□□□□ -0.21
PTP4A2-208	ENST00000524384	RNF17	Q9BXT8	1623 aa	Known RBP	13.71	□□□□□ -0.22
PTP4A2-208	ENST00000524384	GGT6	Q6P531	493 aa		13.7	□□□□□ -0.22
PTP4A2-208	ENST00000524384	POTEA	Q6S8J7	498 aa		13.7	□□□□□ -0.22
PTP4A2-208	ENST00000524384	SPAG9	O60271	1321 aa	Known RBP	13.69	□□□□□ -0.22
PTP4A2-208	ENST00000524384	ATP7A	Q04656	1500 aa		13.69	□□□□□ -0.22
PTP4A2-208	ENST00000524384	A2M	P01023	1474 aa		13.68	□□□□□ -0.22
PTP4A2-208	ENST00000524384	LRRIQ1	Q96JM4	1722 aa		13.68	□□□□□ -0.22
PTP4A2-208	ENST00000524384	ANKLE2	Q86XL3	938 aa		13.68	□□□□□ -0.22
PTP4A2-208	ENST00000524384	LRRC7	Q96NW7	1537 aa		13.68	□□□□□ -0.22
PTP4A2-208	ENST00000524384	CDC42BPA	Q5VT25	1732 aa		13.67	□□□□□ -0.22
PTP4A2-208	ENST00000524384	NPHP4	O75161	1426 aa	Predicted RBP	13.67	□□□□□ -0.22
PTP4A2-208	ENST00000524384	SYCP2	Q9BX26	1530 aa		13.67	□□□□□ -0.22
PTP4A2-208	ENST00000524384	MED14	O60244	1454 aa		13.67	□□□□□ -0.22
PTP4A2-208	ENST00000524384	SYNM	O15061	1565 aa		13.66	□□□□□ -0.22
PTP4A2-208	ENST00000524384	INO80	Q9ULG1	1556 aa	Predicted RBP	13.66	□□□□□ -0.22
PTP4A2-208	ENST00000524384	STRCP1	A6NGW2	1772 aa		13.66	□□□□□ -0.22
PTP4A2-208	ENST00000524384	SETD1A	O15047	1707 aa	Known RBP	13.66	□□□□□ -0.22
PTP4A2-208	ENST00000524384	TNR	Q92752	1358 aa		13.66	□□□□□ -0.22
PTP4A2-208	ENST00000524384	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.66	□□□□□ -0.22	1e-9	■■□□□ 12.2
PTP4A2-208	ENST00000524384	EEA1	Q15075	1411 aa		13.65	□□□□□ -0.22
PTP4A2-208	ENST00000524384	DEPDC5	O75140	1603 aa		13.65	□□□□□ -0.22
PTP4A2-208	ENST00000524384	IQGAP1	P46940	1657 aa		13.64	□□□□□ -0.23
PTP4A2-208	ENST00000524384	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.64	□□□□□ -0.23
PTP4A2-208	ENST00000524384	ARHGAP35	Q9NRY4	1499 aa		13.62	□□□□□ -0.23
PTP4A2-208	ENST00000524384	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.62	□□□□□ -0.23
PTP4A2-208	ENST00000524384	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.62	□□□□□ -0.23
PTP4A2-208	ENST00000524384	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.62	□□□□□ -0.23
PTP4A2-208	ENST00000524384	ADGB	Q8N7X0	1667 aa		13.61	□□□□□ -0.23
PTP4A2-208	ENST00000524384	CREBZF	Q9NS37	354 aa		13.61	□□□□□ -0.23
PTP4A2-208	ENST00000524384	PZP	P20742	1482 aa		13.61	□□□□□ -0.23
PTP4A2-208	ENST00000524384	UGGT1	Q9NYU2	1555 aa		13.6	□□□□□ -0.23
PTP4A2-208	ENST00000524384	FAM135A	Q9P2D6	1515 aa		13.59	□□□□□ -0.23
PTP4A2-208	ENST00000524384	KIAA1107	Q9UPP5	1409 aa		13.59	□□□□□ -0.23
PTP4A2-208	ENST00000524384	NLRP1	Q9C000	1473 aa		13.59	□□□□□ -0.23
PTP4A2-208	ENST00000524384	CCDC18	Q5T9S5	1454 aa		13.57	□□□□□ -0.24
PTP4A2-208	ENST00000524384	PLEKHH2	Q8IVE3	1493 aa		13.57	□□□□□ -0.24
PTP4A2-208	ENST00000524384	FAM135B	Q49AJ0	1406 aa		13.56	□□□□□ -0.24
PTP4A2-208	ENST00000524384	MIA2	Q96PC5	1412 aa		13.56	□□□□□ -0.24
PTP4A2-208	ENST00000524384	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.56	□□□□□ -0.24
PTP4A2-208	ENST00000524384	KDM5D	Q9BY66	1539 aa		13.55	□□□□□ -0.24
PTP4A2-208	ENST00000524384	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.55	□□□□□ -0.24	7e-10	■□□□□ 8.5
PTP4A2-208	ENST00000524384	XIRP1	Q702N8	1843 aa	Known RBP	13.55	□□□□□ -0.24
PTP4A2-208	ENST00000524384	ZC3H13	Q5T200	1668 aa	Known RBP	13.54	□□□□□ -0.24
PTP4A2-208	ENST00000524384	ZRANB1	Q9UGI0	708 aa		13.53	□□□□□ -0.24
PTP4A2-208	ENST00000524384	CASKIN1	Q8WXD9	1431 aa		13.52	□□□□□ -0.25
PTP4A2-208	ENST00000524384	DHX29	Q7Z478	1369 aa	Known RBP	13.51	□□□□□ -0.25
PTP4A2-208	ENST00000524384	WASHC2C	Q9Y4E1	1318 aa		13.51	□□□□□ -0.25
PTP4A2-208	ENST00000524384	UBTF	P17480	764 aa	Known RBP	13.51	□□□□□ -0.25
PTP4A2-208	ENST00000524384	CLCN6	P51797	869 aa		13.51	□□□□□ -0.25
PTP4A2-208	ENST00000524384	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.51	□□□□□ -0.25
PTP4A2-208	ENST00000524384	KIF3B	O15066	747 aa		13.5	□□□□□ -0.25
PTP4A2-208	ENST00000524384	ROBO1	Q9Y6N7	1651 aa		13.5	□□□□□ -0.25
PTP4A2-208	ENST00000524384	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.48	□□□□□ -0.25
PTP4A2-208	ENST00000524384	SRCAP	Q6ZRS2	3230 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms