RNA–Protein interactions for RNA: ENST00000523540.1

PCM1-219, Transcript of pericentriolar material 1, humanhuman

TSL 2

Gene PCM1, Length 640 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCM1-219ENST00000523540 CADPS2Q86UW7 1296 aa11.55□□□□□ -0.56
PCM1-219ENST00000523540 NBPF3Q9H094 633 aa11.53□□□□□ -0.56
PCM1-219ENST00000523540 GOLGA8CPA6NN73 597 aa11.52□□□□□ -0.57
PCM1-219ENST00000523540 DDX27Q96GQ7 796 aaKnown RBP11.51□□□□□ -0.57
PCM1-219ENST00000523540 PPP1R3GB7ZBB8 358 aa11.5□□□□□ -0.57
PCM1-219ENST00000523540 LARP6Q9BRS8 491 aaKnown RBP11.5□□□□□ -0.57
PCM1-219ENST00000523540 EMILIN3Q9NT22 766 aa11.49□□□□□ -0.57
PCM1-219ENST00000523540 PCDHGA10Q9Y5H3 936 aa11.48□□□□□ -0.57
PCM1-219ENST00000523540 MAP3K9P80192 1104 aa11.47□□□□□ -0.57
PCM1-219ENST00000523540 RABGEF1Q9UJ41 708 aa11.47□□□□□ -0.57
PCM1-219ENST00000523540 CAMK2BQ13554 666 aa11.46□□□□□ -0.57
PCM1-219ENST00000523540 ITGBL1O95965 494 aaPredicted RBP11.45□□□□□ -0.58
PCM1-219ENST00000523540 COL9A1P20849 921 aa11.45□□□□□ -0.58
PCM1-219ENST00000523540 IRX2Q9BZI1 471 aaPredicted RBP11.45□□□□□ -0.58
PCM1-219ENST00000523540 PROX2Q3B8N5 592 aa11.44□□□□□ -0.58
PCM1-219ENST00000523540 ARIH1Q9Y4X5 557 aaPredicted RBP11.44□□□□□ -0.58
PCM1-219ENST00000523540 WDR70Q9NW82 654 aa11.43□□□□□ -0.58
PCM1-219ENST00000523540 PHF14O94880 888 aa11.41□□□□□ -0.58
PCM1-219ENST00000523540 ANKK1Q8NFD2 765 aa11.41□□□□□ -0.58
PCM1-219ENST00000523540 FBXW7Q969H0 707 aa11.41□□□□□ -0.58
PCM1-219ENST00000523540 TYW1BQ6NUM6 668 aa11.4□□□□□ -0.58
PCM1-219ENST00000523540 LAPTM4BQ86VI4 370 aa11.4□□□□□ -0.58
PCM1-219ENST00000523540 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
PCM1-219ENST00000523540 SOWAHBA6NEL2 793 aa11.38□□□□□ -0.59
PCM1-219ENST00000523540 ONECUT3O60422 494 aaPredicted RBP11.38□□□□□ -0.59
PCM1-219ENST00000523540 E2F4Q16254 413 aa11.38□□□□□ -0.59
PCM1-219ENST00000523540 BCAMP50895 628 aa11.37□□□□□ -0.59
PCM1-219ENST00000523540 NYAP1Q6ZVC0 841 aa11.35□□□□□ -0.59
PCM1-219ENST00000523540 ZFRQ96KR1 1074 aaKnown RBP11.34□□□□□ -0.59
PCM1-219ENST00000523540 KIAA1468Q9P260 1216 aa11.34□□□□□ -0.59
PCM1-219ENST00000523540 ARHGEF1Q92888 912 aaKnown RBP11.32□□□□□ -0.6
PCM1-219ENST00000523540 C6orf132Q5T0Z8 1188 aa11.31□□□□□ -0.6
PCM1-219ENST00000523540 EPAS1Q99814 870 aa11.31□□□□□ -0.6
PCM1-219ENST00000523540 WBP1LQ9NX94 342 aa11.3□□□□□ -0.6
PCM1-219ENST00000523540 TRIM6-TRIM34B2RNG4 842 aa11.28□□□□□ -0.6
PCM1-219ENST00000523540 SEPT9Q9UHD8 586 aaPredicted RBP11.27□□□□□ -0.61
PCM1-219ENST00000523540 SPDYE16A6NNV3 312 aaPredicted RBP11.26□□□□□ -0.61
PCM1-219ENST00000523540 KCNC4Q03721 635 aa11.26□□□□□ -0.61
PCM1-219ENST00000523540 FAM98CQ17RN3 349 aaKnown RBP11.26□□□□□ -0.61
PCM1-219ENST00000523540 PDIA6Q15084 440 aa11.25□□□□□ -0.61
PCM1-219ENST00000523540 KCNV2Q8TDN2 545 aa11.25□□□□□ -0.61
PCM1-219ENST00000523540 DPYSL4O14531 572 aa11.24□□□□□ -0.61
PCM1-219ENST00000523540 BCANQ96GW7 911 aa11.23□□□□□ -0.61
PCM1-219ENST00000523540 TSR3Q9UJK0 312 aaKnown RBP11.22□□□□□ -0.61
PCM1-219ENST00000523540 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.21□□□□□ -0.61
PCM1-219ENST00000523540 LRCH3Q96II8 777 aa11.19□□□□□ -0.62
PCM1-219ENST00000523540 HPS5Q9UPZ3 1129 aa11.19□□□□□ -0.62
PCM1-219ENST00000523540 EN1Q05925 392 aaPredicted RBP11.18□□□□□ -0.62
PCM1-219ENST00000523540 Q6ZNB5 142 aa11.18□□□□□ -0.62
PCM1-219ENST00000523540 RBM33Q96EV2 1170 aaKnown RBP11.18□□□□□ -0.62
PCM1-219ENST00000523540 TSKSQ9UJT2 592 aa11.18□□□□□ -0.62
PCM1-219ENST00000523540 DDX12PQ92771 950 aa11.17□□□□□ -0.62
PCM1-219ENST00000523540 TSR1Q2NL82 804 aaKnown RBP11.14□□□□□ -0.63
PCM1-219ENST00000523540 LCE2BO14633 110 aa11.13□□□□□ -0.63
PCM1-219ENST00000523540 NBR1Q14596 966 aa11.13□□□□□ -0.63
PCM1-219ENST00000523540 LAPTM4AQ15012 233 aa11.12□□□□□ -0.63
PCM1-219ENST00000523540 PACS2Q86VP3 889 aa11.12□□□□□ -0.63
PCM1-219ENST00000523540 TJAP1Q5JTD0 557 aa11.11□□□□□ -0.63
PCM1-219ENST00000523540 MAP3K7O43318 606 aa11.09□□□□□ -0.63
PCM1-219ENST00000523540 FAM198AQ9UFP1 575 aa11.09□□□□□ -0.63
PCM1-219ENST00000523540 PPP4CP60510 307 aa11.08□□□□□ -0.64
PCM1-219ENST00000523540 CDCA7LQ96GN5 454 aa11.07□□□□□ -0.64
PCM1-219ENST00000523540 C3orf80F5H4A9 247 aa11.06□□□□□ -0.64
PCM1-219ENST00000523540 PRIM1P49642 420 aaKnown RBP11.06□□□□□ -0.64
PCM1-219ENST00000523540 PRSS12P56730 875 aa11.06□□□□□ -0.64
PCM1-219ENST00000523540 SAMD7Q7Z3H4 446 aa11.06□□□□□ -0.64
PCM1-219ENST00000523540 TESPA1A2RU30 521 aaPredicted RBP11.05□□□□□ -0.64
PCM1-219ENST00000523540 SMAPO00193 183 aa11.04□□□□□ -0.64
PCM1-219ENST00000523540 CERKQ8TCT0 537 aa11.04□□□□□ -0.64
PCM1-219ENST00000523540 GFRA3O60609 400 aa11.03□□□□□ -0.64
PCM1-219ENST00000523540 SEMA3EO15041 775 aa11.02□□□□□ -0.65
PCM1-219ENST00000523540 SMYD5Q6GMV2 418 aa11.02□□□□□ -0.65
PCM1-219ENST00000523540 TRAF7Q6Q0C0 670 aa11.02□□□□□ -0.65
PCM1-219ENST00000523540 MTRQ99707 1265 aa11.02□□□□□ -0.65
PCM1-219ENST00000523540 IL21Q9HBE4 155 aa11.02□□□□□ -0.65
PCM1-219ENST00000523540 TATDN2Q93075 761 aa11.01□□□□□ -0.65
PCM1-219ENST00000523540 PRKD2Q9BZL6 878 aa11.01□□□□□ -0.65
PCM1-219ENST00000523540 NBPF26B4DH59 902 aa10.99□□□□□ -0.65
PCM1-219ENST00000523540 PPP1R18Q6NYC8 613 aa10.99□□□□□ -0.65
PCM1-219ENST00000523540 PNMA3Q9UL41 463 aa10.99□□□□□ -0.65
PCM1-219ENST00000523540 V9GY48 417 aaPredicted RBP10.99□□□□□ -0.65
PCM1-219ENST00000523540 NRG2O14511 850 aaPredicted RBP10.98□□□□□ -0.65
PCM1-219ENST00000523540 TULP1O00294 542 aaPredicted RBP10.97□□□□□ -0.65
PCM1-219ENST00000523540 RBM27Q9P2N5 1060 aaKnown RBP10.97□□□□□ -0.65
PCM1-219ENST00000523540 OSBPP22059 807 aa10.96□□□□□ -0.65
PCM1-219ENST00000523540 ZNF516Q92618 1163 aa10.96□□□□□ -0.65
PCM1-219ENST00000523540 APLP1P51693 650 aa10.95□□□□□ -0.66
PCM1-219ENST00000523540 CDHR5Q9HBB8 845 aa10.95□□□□□ -0.66
PCM1-219ENST00000523540 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.95□□□□□ -0.66
PCM1-219ENST00000523540 MLLT3P42568 568 aaPredicted RBP10.93□□□□□ -0.66
PCM1-219ENST00000523540 NUDT18Q6ZVK8 323 aa10.93□□□□□ -0.66
PCM1-219ENST00000523540 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.93□□□□□ -0.66
PCM1-219ENST00000523540 TTC13Q8NBP0 860 aa10.93□□□□□ -0.66
PCM1-219ENST00000523540 GRXCR2A6NFK2 248 aa10.92□□□□□ -0.66
PCM1-219ENST00000523540 NKX2-3Q8TAU0 364 aa10.89□□□□□ -0.67
PCM1-219ENST00000523540 NPDC1Q9NQX5 325 aaPredicted RBP10.88□□□□□ -0.67
PCM1-219ENST00000523540 HDGFP51858 240 aaKnown RBP10.87□□□□□ -0.67
PCM1-219ENST00000523540 LMOD2Q6P5Q4 547 aa10.87□□□□□ -0.67
PCM1-219ENST00000523540 NECTIN2Q92692 538 aa10.87□□□□□ -0.67
PCM1-219ENST00000523540 RNF40O75150 1001 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms