RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 SETD1BQ9UPS6 1966 aaKnown RBP24.98■■□□□ 1.59
LSM1-205ENST00000523511 PREX1Q8TCU6 1659 aa24.98■■□□□ 1.59
LSM1-205ENST00000523511 FAM135AQ9P2D6 1515 aa24.98■■□□□ 1.59
LSM1-205ENST00000523511 DUOX2Q9NRD8 1548 aa24.97■■□□□ 1.59
LSM1-205ENST00000523511 CLTCQ00610 1675 aaKnown RBP24.94■■□□□ 1.58
LSM1-205ENST00000523511 PTPRKQ15262 1439 aa24.94■■□□□ 1.58
LSM1-205ENST00000523511 KDM5DQ9BY66 1539 aa24.93■■□□□ 1.58
LSM1-205ENST00000523511 ERBINQ96RT1 1412 aa24.92■■□□□ 1.58
LSM1-205ENST00000523511 DNMT1P26358 1616 aaKnown RBP24.91■■□□□ 1.58
LSM1-205ENST00000523511 PPARGC1BQ86YN6 1023 aaKnown RBP24.91■■□□□ 1.58
LSM1-205ENST00000523511 KANK1Q14678 1352 aa24.9■■□□□ 1.58
LSM1-205ENST00000523511 NCOA1Q15788 1441 aa24.88■■□□□ 1.57
LSM1-205ENST00000523511 EIF2AK4Q9P2K8 1649 aaKnown RBP24.88■■□□□ 1.57
LSM1-205ENST00000523511 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.88■■□□□ 1.578e-6■□□□□ 10.1
LSM1-205ENST00000523511 FBXO31Q5XUX0 539 aaPredicted RBP24.87■■□□□ 1.57
LSM1-205ENST00000523511 TNRQ92752 1358 aa24.86■■□□□ 1.57
LSM1-205ENST00000523511 PZPP20742 1482 aa24.85■■□□□ 1.57
LSM1-205ENST00000523511 PKD2Q13563 968 aa24.83■■□□□ 1.57
LSM1-205ENST00000523511 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.82■■□□□ 1.56
LSM1-205ENST00000523511 THEMISQ8N1K5 641 aaPredicted RBP24.82■■□□□ 1.56
LSM1-205ENST00000523511 RNF17Q9BXT8 1623 aaKnown RBP24.82■■□□□ 1.56
LSM1-205ENST00000523511 CROCC2H7BZ55 1655 aa24.81■■□□□ 1.56
LSM1-205ENST00000523511 ADGRL2O95490 1459 aa24.81■■□□□ 1.56
LSM1-205ENST00000523511 ITGAEP38570 1179 aa24.79■■□□□ 1.56
LSM1-205ENST00000523511 ABCC3O15438 1527 aa24.78■■□□□ 1.56
LSM1-205ENST00000523511 PTPRTO14522 1441 aa24.78■■□□□ 1.56
LSM1-205ENST00000523511 A2ML1A8K2U0 1454 aa24.77■■□□□ 1.56
LSM1-205ENST00000523511 ZC3H13Q5T200 1668 aaKnown RBP24.76■■□□□ 1.55
LSM1-205ENST00000523511 ROCK1Q13464 1354 aa24.76■■□□□ 1.55
LSM1-205ENST00000523511 ANKRD50Q9ULJ7 1429 aa24.76■■□□□ 1.55
LSM1-205ENST00000523511 NLRP1Q9C000 1473 aa24.75■■□□□ 1.55
LSM1-205ENST00000523511 NCKAP5LQ9HCH0 1330 aa24.74■■□□□ 1.55
LSM1-205ENST00000523511 CEP170BQ9Y4F5 1589 aaPredicted RBP24.74■■□□□ 1.55
LSM1-205ENST00000523511 CAMSAP1Q5T5Y3 1602 aa24.74■■□□□ 1.55
LSM1-205ENST00000523511 PLA2R1Q13018 1463 aa24.73■■□□□ 1.55
LSM1-205ENST00000523511 ARHGAP31Q2M1Z3 1444 aa24.73■■□□□ 1.55
LSM1-205ENST00000523511 ILDR1Q86SU0 546 aaPredicted RBP24.73■■□□□ 1.55
LSM1-205ENST00000523511 ANKLE2Q86XL3 938 aa24.72■■□□□ 1.55
LSM1-205ENST00000523511 MYO3AQ8NEV4 1616 aa24.72■■□□□ 1.55
LSM1-205ENST00000523511 FBXO41Q8TF61 875 aa24.71■■□□□ 1.55
LSM1-205ENST00000523511 PRDM15P57071 1507 aaPredicted RBP24.71■■□□□ 1.55
LSM1-205ENST00000523511 CERKQ8TCT0 537 aa24.7■■□□□ 1.54
LSM1-205ENST00000523511 MROH1Q8NDA8 1641 aa24.68■■□□□ 1.54
LSM1-205ENST00000523511 ZNF142P52746 1687 aaPredicted RBP24.66■■□□□ 1.54
LSM1-205ENST00000523511 ERVK-7P63135 1459 aa24.66■■□□□ 1.54
LSM1-205ENST00000523511 STAG3Q9UJ98 1225 aa24.66■■□□□ 1.54
LSM1-205ENST00000523511 STRCQ7RTU9 1775 aa24.66■■□□□ 1.54
LSM1-205ENST00000523511 SPATA31D1Q6ZQQ2 1576 aa24.64■■□□□ 1.54
LSM1-205ENST00000523511 UGGT1Q9NYU2 1555 aa24.63■■□□□ 1.53
LSM1-205ENST00000523511 RRBP1Q9P2E9 1410 aaKnown RBP24.63■■□□□ 1.53
LSM1-205ENST00000523511 LMTK2Q8IWU2 1503 aa24.63■■□□□ 1.53
LSM1-205ENST00000523511 DEPDC5O75140 1603 aa24.63■■□□□ 1.53
LSM1-205ENST00000523511 SLC52A1Q9NWF4 448 aa24.61■■□□□ 1.53
LSM1-205ENST00000523511 EID1Q9Y6B2 187 aa24.59■■□□□ 1.53
LSM1-205ENST00000523511 CEP152O94986 1710 aa24.58■■□□□ 1.53
LSM1-205ENST00000523511 VWDEQ8N2E2 1590 aa24.57■■□□□ 1.52
LSM1-205ENST00000523511 NUP155O75694 1391 aa24.55■■□□□ 1.52
LSM1-205ENST00000523511 IDI1Q13907 227 aa24.55■■□□□ 1.52
LSM1-205ENST00000523511 RPRD2Q5VT52 1461 aaKnown RBP24.54■■□□□ 1.52
LSM1-205ENST00000523511 HDGFP51858 240 aaKnown RBP24.52■■□□□ 1.52
LSM1-205ENST00000523511 TXNDC2Q86VQ3 553 aa24.52■■□□□ 1.52
LSM1-205ENST00000523511 EFCAB6Q5THR3 1501 aa24.51■■□□□ 1.51
LSM1-205ENST00000523511 ZNF335Q9H4Z2 1342 aaPredicted RBP24.49■■□□□ 1.51
LSM1-205ENST00000523511 NPHP4O75161 1426 aaPredicted RBP24.49■■□□□ 1.51
LSM1-205ENST00000523511 NOS1P29475 1434 aa24.49■■□□□ 1.51
LSM1-205ENST00000523511 MED14O60244 1454 aa24.46■■□□□ 1.51
LSM1-205ENST00000523511 UNC13BO14795 1591 aa24.45■■□□□ 1.5
LSM1-205ENST00000523511 TMEM2Q9UHN6 1383 aa24.44■■□□□ 1.5
LSM1-205ENST00000523511 TRIM52Q96A61 297 aa24.43■■□□□ 1.5
LSM1-205ENST00000523511 IQSEC2Q5JU85 1478 aa24.43■■□□□ 1.5
LSM1-205ENST00000523511 CFAP65Q6ZU64 1925 aaKnown RBP24.42■■□□□ 1.5
LSM1-205ENST00000523511 TET3O43151 1660 aa24.42■■□□□ 1.5
LSM1-205ENST00000523511 ACIN1Q9UKV3 1341 aaKnown RBP24.41■■□□□ 1.5
LSM1-205ENST00000523511 SCAF11Q99590 1463 aaKnown RBP24.41■■□□□ 1.5
LSM1-205ENST00000523511 CHGAP10645 457 aaKnown RBP24.41■■□□□ 1.5
LSM1-205ENST00000523511 LTKP29376 864 aa24.41■■□□□ 1.5
LSM1-205ENST00000523511 LTBP4Q8N2S1 1624 aa24.41■■□□□ 1.5
LSM1-205ENST00000523511 NAIPQ13075 1403 aa24.41■■□□□ 1.5
LSM1-205ENST00000523511 SLIT1O75093 1534 aa24.4■■□□□ 1.5
LSM1-205ENST00000523511 BCANQ96GW7 911 aa24.39■■□□□ 1.49
LSM1-205ENST00000523511 ARHGAP23Q9P227 1491 aa24.38■■□□□ 1.49
LSM1-205ENST00000523511 POLR1AO95602 1720 aaPredicted RBP24.38■■□□□ 1.49
LSM1-205ENST00000523511 UBR1Q8IWV7 1749 aa24.38■■□□□ 1.49
LSM1-205ENST00000523511 HFM1A2PYH4 1435 aa24.38■■□□□ 1.49
LSM1-205ENST00000523511 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.38■■□□□ 1.49
LSM1-205ENST00000523511 NEURL4Q96JN8 1562 aa24.37■■□□□ 1.49
LSM1-205ENST00000523511 IQGAP3Q86VI3 1631 aa24.36■■□□□ 1.49
LSM1-205ENST00000523511 PPP1R15AO75807 674 aaPredicted RBP24.36■■□□□ 1.49
LSM1-205ENST00000523511 PIK3C2BO00750 1634 aa24.35■■□□□ 1.49
LSM1-205ENST00000523511 SYNMO15061 1565 aa24.35■■□□□ 1.49
LSM1-205ENST00000523511 CPS1P31327 1500 aa24.35■■□□□ 1.49
LSM1-205ENST00000523511 KDM5AP29375 1690 aaKnown RBP24.34■■□□□ 1.49
LSM1-205ENST00000523511 GCC2Q8IWJ2 1684 aa24.34■■□□□ 1.49
LSM1-205ENST00000523511 UBAP1LF5GYI3 381 aa24.33■■□□□ 1.49
LSM1-205ENST00000523511 SLC4A1APQ9BWU0 796 aaKnown RBP24.32■■□□□ 1.48
LSM1-205ENST00000523511 ADGRB3O60242 1522 aa24.31■■□□□ 1.48
LSM1-205ENST00000523511 IQGAP1P46940 1657 aa24.3■■□□□ 1.48
LSM1-205ENST00000523511 TOM1O60784 492 aa24.3■■□□□ 1.48
LSM1-205ENST00000523511 SLC26A8Q96RN1 970 aa24.26■■□□□ 1.47
LSM1-205ENST00000523511 E9PCH4 1651 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms