RNA–Protein interactions for RNA: ENST00000513761.5

CLCN3-209, Transcript of chloride voltage-gated channel 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCN3, Length 6,692 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-209ENST00000513761 C11orf95C9JLR9 678 aaPredicted RBP9.76□□□□□ -0.85
CLCN3-209ENST00000513761 PNISRQ8TF01 805 aaKnown RBP9.76□□□□□ -0.85
CLCN3-209ENST00000513761 SKAP1Q86WV1 359 aa9.76□□□□□ -0.85
CLCN3-209ENST00000513761 E9PSI1 815 aa9.76□□□□□ -0.85
CLCN3-209ENST00000513761 SMG6Q86US8 1419 aaKnown RBP9.76□□□□□ -0.85
CLCN3-209ENST00000513761 STK26Q9P289 416 aa9.75□□□□□ -0.85
CLCN3-209ENST00000513761 CCDC144AA2RUR9 1427 aa9.75□□□□□ -0.85
CLCN3-209ENST00000513761 CGNL1Q0VF96 1302 aa9.75□□□□□ -0.85
CLCN3-209ENST00000513761 PRKCSHP14314 528 aaPredicted RBP9.75□□□□□ -0.85
CLCN3-209ENST00000513761 ADAMTS8Q9UP79 889 aa9.75□□□□□ -0.85
CLCN3-209ENST00000513761 RAD54L2Q9Y4B4 1467 aa9.75□□□□□ -0.85
CLCN3-209ENST00000513761 DDX11L8A8MPP1 907 aa9.75□□□□□ -0.85
CLCN3-209ENST00000513761 BRD4O60885 1362 aaPredicted RBP9.75□□□□□ -0.85
CLCN3-209ENST00000513761 CASKIN1Q8WXD9 1431 aa9.74□□□□□ -0.85
CLCN3-209ENST00000513761 CALD1Q05682 793 aaKnown RBP9.74□□□□□ -0.85
CLCN3-209ENST00000513761 PTMSP20962 102 aa9.74□□□□□ -0.85
CLCN3-209ENST00000513761 C14orf37Q86TY3 774 aa9.74□□□□□ -0.85
CLCN3-209ENST00000513761 PANK1Q8TE04 598 aa9.74□□□□□ -0.85
CLCN3-209ENST00000513761 TIAM1Q13009 1591 aa9.74□□□□□ -0.85
CLCN3-209ENST00000513761 FOXD4L5Q5VV16 416 aaPredicted RBP9.73□□□□□ -0.85
CLCN3-209ENST00000513761 FOXD4L4Q8WXT5 416 aaPredicted RBP9.73□□□□□ -0.85
CLCN3-209ENST00000513761 CFTRP13569 1480 aa9.73□□□□□ -0.85
CLCN3-209ENST00000513761 KANK1Q14678 1352 aa9.73□□□□□ -0.85
CLCN3-209ENST00000513761 SOX12O15370 315 aa9.73□□□□□ -0.85
CLCN3-209ENST00000513761 HFM1A2PYH4 1435 aa9.72□□□□□ -0.85
CLCN3-209ENST00000513761 CUX1P39880 1505 aa9.72□□□□□ -0.85
CLCN3-209ENST00000513761 CHAF1AQ13111 956 aaPredicted RBP9.72□□□□□ -0.85
CLCN3-209ENST00000513761 NOL8Q76FK4 1167 aaKnown RBP9.72□□□□□ -0.85
CLCN3-209ENST00000513761 DDX49Q9Y6V7 483 aaKnown RBP9.72□□□□□ -0.85
CLCN3-209ENST00000513761 FANCD2Q9BXW9 1451 aa9.71□□□□□ -0.85
CLCN3-209ENST00000513761 ZRSR1Q15695 479 aaKnown RBP9.71□□□□□ -0.86
CLCN3-209ENST00000513761 TAOK2Q9UL54 1235 aa9.71□□□□□ -0.86
CLCN3-209ENST00000513761 EIF3AQ14152 1382 aaKnown RBP9.71□□□□□ -0.86
CLCN3-209ENST00000513761 MCCP23508 829 aa9.71□□□□□ -0.86
CLCN3-209ENST00000513761 CARMIL2Q6F5E8 1435 aa9.71□□□□□ -0.86
CLCN3-209ENST00000513761 AMER1Q5JTC6 1135 aaPredicted RBP9.71□□□□□ -0.86
CLCN3-209ENST00000513761 GGT6Q6P531 493 aa9.71□□□□□ -0.86
CLCN3-209ENST00000513761 KCNJ4P48050 445 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 CHMP5Q9NZZ3 219 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 OS9Q13438 667 aaPredicted RBP9.7□□□□□ -0.86
CLCN3-209ENST00000513761 TRAK1Q9UPV9 953 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 KIAA2012Q0VF49 1180 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 NUTM2DQ5VT03 806 aaPredicted RBP9.7□□□□□ -0.86
CLCN3-209ENST00000513761 ZKSCAN2Q63HK3 967 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 FYCO1Q9BQS8 1478 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 ANKRD45Q5TZF3 282 aa9.7□□□□□ -0.86
CLCN3-209ENST00000513761 DRC7Q8IY82 874 aa9.69□□□□□ -0.86
CLCN3-209ENST00000513761 GOLGA6L4A6NEF3 574 aa9.69□□□□□ -0.86
CLCN3-209ENST00000513761 ELL2O00472 640 aaPredicted RBP9.69□□□□□ -0.86
CLCN3-209ENST00000513761 TOP2BQ02880 1626 aa9.69□□□□□ -0.86
CLCN3-209ENST00000513761 PDS5BQ9NTI5 1447 aa9.68□□□□□ -0.86
CLCN3-209ENST00000513761 KIF3BO15066 747 aa9.68□□□□□ -0.86
CLCN3-209ENST00000513761 CFAP44Q96MT7 982 aa9.68□□□□□ -0.86
CLCN3-209ENST00000513761 NAIPQ13075 1403 aa9.68□□□□□ -0.86
CLCN3-209ENST00000513761 NBPF1Q3BBV0 1214 aa9.68□□□□□ -0.86
CLCN3-209ENST00000513761 FOXD4L6Q3SYB3 417 aaPredicted RBP9.68□□□□□ -0.86
CLCN3-209ENST00000513761 FOXD4L3Q6VB84 417 aaPredicted RBP9.68□□□□□ -0.86
CLCN3-209ENST00000513761 C22orf23Q9BZE7 217 aa9.68□□□□□ -0.86
CLCN3-209ENST00000513761 BCAR3O75815 825 aa9.67□□□□□ -0.86
CLCN3-209ENST00000513761 ERCC6Q03468 1493 aa9.66□□□□□ -0.86
CLCN3-209ENST00000513761 FGD1P98174 961 aa9.66□□□□□ -0.86
CLCN3-209ENST00000513761 EFCAB2Q5VUJ9 269 aa9.66□□□□□ -0.86
CLCN3-209ENST00000513761 HDGFL2Q7Z4V5 671 aaPredicted RBP9.66□□□□□ -0.86
CLCN3-209ENST00000513761 DZIP1LQ8IYY4 767 aaKnown RBP9.66□□□□□ -0.86
CLCN3-209ENST00000513761 CDK11BP21127 795 aaKnown RBP9.66□□□□□ -0.86
CLCN3-209ENST00000513761 SKOR2Q2VWA4 1001 aaPredicted RBP9.66□□□□□ -0.86
CLCN3-209ENST00000513761 JPH4Q96JJ6 628 aa9.66□□□□□ -0.86
CLCN3-209ENST00000513761 NAP1L2Q9ULW6 460 aaPredicted RBP9.66□□□□□ -0.86
CLCN3-209ENST00000513761 MAPKBP1O60336 1514 aa9.66□□□□□ -0.86
CLCN3-209ENST00000513761 FAM43AQ8N2R8 423 aa9.66□□□□□ -0.86
CLCN3-209ENST00000513761 TRAK2O60296 914 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 FAM13BQ9NYF5 915 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 MIA2Q96PC5 1412 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 C20orf194Q5TEA3 1177 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 SYAP1Q96A49 352 aaPredicted RBP9.65□□□□□ -0.86
CLCN3-209ENST00000513761 LNPKQ9C0E8 428 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 ANKRD50Q9ULJ7 1429 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 PPP2R1AP30153 589 aa9.65□□□□□ -0.86
CLCN3-209ENST00000513761 TRIM6-TRIM34B2RNG4 842 aa9.65□□□□□ -0.87
CLCN3-209ENST00000513761 RSPH4AQ5TD94 716 aa9.65□□□□□ -0.87
CLCN3-209ENST00000513761 ST18O60284 1047 aa9.64□□□□□ -0.87
CLCN3-209ENST00000513761 GAPVD1Q14C86 1478 aa9.64□□□□□ -0.87
CLCN3-209ENST00000513761 SLC4A10Q6U841 1118 aa9.64□□□□□ -0.87
CLCN3-209ENST00000513761 MRE11P49959 708 aa9.63□□□□□ -0.87
CLCN3-209ENST00000513761 PDZRN3Q9UPQ7 1066 aa9.63□□□□□ -0.87
CLCN3-209ENST00000513761 DDX19BQ9UMR2 479 aa9.63□□□□□ -0.87
CLCN3-209ENST00000513761 SPAG9O60271 1321 aaKnown RBP9.63□□□□□ -0.87
CLCN3-209ENST00000513761 KIAA1211Q6ZU35 1233 aa9.63□□□□□ -0.87
CLCN3-209ENST00000513761 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.62□□□□□ -0.87
CLCN3-209ENST00000513761 RTF1Q92541 710 aaKnown RBP9.62□□□□□ -0.87
CLCN3-209ENST00000513761 RUNDC1Q96C34 613 aa9.62□□□□□ -0.87
CLCN3-209ENST00000513761 HAP1P54257 671 aaPredicted RBP9.62□□□□□ -0.87
CLCN3-209ENST00000513761 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.61□□□□□ -0.87
CLCN3-209ENST00000513761 GOLGA6L6A8MZA4 724 aa9.61□□□□□ -0.87
CLCN3-209ENST00000513761 MCTP1Q6DN14 999 aa9.61□□□□□ -0.87
CLCN3-209ENST00000513761 NCOA1Q15788 1441 aa9.6□□□□□ -0.87
CLCN3-209ENST00000513761 TERF2IPQ9NYB0 399 aa9.6□□□□□ -0.87
CLCN3-209ENST00000513761 PCF11O94913 1555 aaKnown RBP9.6□□□□□ -0.87
CLCN3-209ENST00000513761 KIAA1107Q9UPP5 1409 aa9.6□□□□□ -0.87
CLCN3-209ENST00000513761 NASPP49321 788 aaPredicted RBP9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms