RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 FBXO31Q5XUX0 539 aaPredicted RBP18.92■□□□□ 0.62
RNF4-216ENST00000511859 CCNB3Q8WWL7 1395 aa18.92■□□□□ 0.62
RNF4-216ENST00000511859 TNRQ92752 1358 aa18.92■□□□□ 0.62
RNF4-216ENST00000511859 NEURL4Q96JN8 1562 aa18.92■□□□□ 0.62
RNF4-216ENST00000511859 FYCO1Q9BQS8 1478 aa18.92■□□□□ 0.62
RNF4-216ENST00000511859 RTEL1-TNFRSF6BF6WH68 1400 aa18.89■□□□□ 0.61
RNF4-216ENST00000511859 DHX29Q7Z478 1369 aaKnown RBP18.89■□□□□ 0.61
RNF4-216ENST00000511859 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.88■□□□□ 0.61
RNF4-216ENST00000511859 VWDEQ8N2E2 1590 aa18.87■□□□□ 0.61
RNF4-216ENST00000511859 MED14O60244 1454 aa18.87■□□□□ 0.61
RNF4-216ENST00000511859 KIF3BO15066 747 aa18.86■□□□□ 0.61
RNF4-216ENST00000511859 PZPP20742 1482 aa18.86■□□□□ 0.61
RNF4-216ENST00000511859 WASHC2CQ9Y4E1 1318 aa18.85■□□□□ 0.61
RNF4-216ENST00000511859 NPHP4O75161 1426 aaPredicted RBP18.85■□□□□ 0.61
RNF4-216ENST00000511859 ALKQ9UM73 1620 aa18.84■□□□□ 0.61
RNF4-216ENST00000511859 MIA2Q96PC5 1412 aa18.84■□□□□ 0.61
RNF4-216ENST00000511859 FAM135AQ9P2D6 1515 aa18.84■□□□□ 0.61
RNF4-216ENST00000511859 DEPDC5O75140 1603 aa18.84■□□□□ 0.61
RNF4-216ENST00000511859 NLRP1Q9C000 1473 aa18.84■□□□□ 0.61
RNF4-216ENST00000511859 MBD5Q9P267 1494 aa18.84■□□□□ 0.61
RNF4-216ENST00000511859 ZNF644Q9H582 1327 aaPredicted RBP18.84■□□□□ 0.61
RNF4-216ENST00000511859 MTUS2Q5JR59 1369 aa18.82■□□□□ 0.6
RNF4-216ENST00000511859 UGGT1Q9NYU2 1555 aa18.82■□□□□ 0.6
RNF4-216ENST00000511859 KDM5DQ9BY66 1539 aa18.81■□□□□ 0.6
RNF4-216ENST00000511859 RSPH4AQ5TD94 716 aa18.81■□□□□ 0.6
RNF4-216ENST00000511859 RGS17Q9UGC6 210 aaPredicted RBP18.79■□□□□ 0.6
RNF4-216ENST00000511859 LRRC7Q96NW7 1537 aa18.78■□□□□ 0.6
RNF4-216ENST00000511859 IQGAP1P46940 1657 aa18.78■□□□□ 0.6
RNF4-216ENST00000511859 SENP3Q9H4L4 574 aaPredicted RBP18.78■□□□□ 0.6
RNF4-216ENST00000511859 STRCP1A6NGW2 1772 aa18.76■□□□□ 0.59
RNF4-216ENST00000511859 RNF17Q9BXT8 1623 aaKnown RBP18.75■□□□□ 0.59
RNF4-216ENST00000511859 SYNMO15061 1565 aa18.73■□□□□ 0.59
RNF4-216ENST00000511859 TIAM1Q13009 1591 aa18.73■□□□□ 0.59
RNF4-216ENST00000511859 CCDC141Q6ZP82 1450 aa18.71■□□□□ 0.59
RNF4-216ENST00000511859 TSPY4P0CV99 314 aa18.69■□□□□ 0.58
RNF4-216ENST00000511859 TSPY10P0CW01 314 aa18.69■□□□□ 0.58
RNF4-216ENST00000511859 CEP162Q5TB80 1403 aa18.68■□□□□ 0.58
RNF4-216ENST00000511859 EHBP1L1Q8N3D4 1523 aa18.68■□□□□ 0.58
RNF4-216ENST00000511859 CFAP65Q6ZU64 1925 aaKnown RBP18.65■□□□□ 0.58
RNF4-216ENST00000511859 FAM135BQ49AJ0 1406 aa18.65■□□□□ 0.58
RNF4-216ENST00000511859 ZC3H13Q5T200 1668 aaKnown RBP18.65■□□□□ 0.58
RNF4-216ENST00000511859 POTEAQ6S8J7 498 aa18.65■□□□□ 0.58
RNF4-216ENST00000511859 TXNDC2Q86VQ3 553 aa18.63■□□□□ 0.57
RNF4-216ENST00000511859 CAMSAP2Q08AD1 1489 aa18.63■□□□□ 0.57
RNF4-216ENST00000511859 SCAF11Q99590 1463 aaKnown RBP18.63■□□□□ 0.57
RNF4-216ENST00000511859 LTKP29376 864 aa18.62■□□□□ 0.57
RNF4-216ENST00000511859 ABCC3O15438 1527 aa18.61■□□□□ 0.57
RNF4-216ENST00000511859 XIRP1Q702N8 1843 aaKnown RBP18.61■□□□□ 0.57
RNF4-216ENST00000511859 ERVK-7P63135 1459 aa18.61■□□□□ 0.57
RNF4-216ENST00000511859 EID1Q9Y6B2 187 aa18.61■□□□□ 0.57
RNF4-216ENST00000511859 UBR1Q8IWV7 1749 aa18.61■□□□□ 0.57
RNF4-216ENST00000511859 ARHGEF5Q12774 1597 aa18.59■□□□□ 0.57
RNF4-216ENST00000511859 SLIT1O75093 1534 aa18.58■□□□□ 0.56
RNF4-216ENST00000511859 NCOA2Q15596 1464 aa18.57■□□□□ 0.56
RNF4-216ENST00000511859 ARHGAP23Q9P227 1491 aa18.57■□□□□ 0.56
RNF4-216ENST00000511859 EIF2AK4Q9P2K8 1649 aaKnown RBP18.54■□□□□ 0.56
RNF4-216ENST00000511859 KCNA6P17658 529 aa18.53■□□□□ 0.56
RNF4-216ENST00000511859 TMEM94Q12767 1356 aa18.52■□□□□ 0.56
RNF4-216ENST00000511859 MAST1Q9Y2H9 1570 aa18.51■□□□□ 0.55
RNF4-216ENST00000511859 ARHGAP31Q2M1Z3 1444 aa18.51■□□□□ 0.55
RNF4-216ENST00000511859 PROSER2Q86WR7 435 aaPredicted RBP18.5■□□□□ 0.55
RNF4-216ENST00000511859 STAG3Q9UJ98 1225 aa18.5■□□□□ 0.55
RNF4-216ENST00000511859 CEP152O94986 1710 aa18.5■□□□□ 0.55
RNF4-216ENST00000511859 TMEM2Q9UHN6 1383 aa18.5■□□□□ 0.55
RNF4-216ENST00000511859 ROBO1Q9Y6N7 1651 aa18.49■□□□□ 0.55
RNF4-216ENST00000511859 MROH1Q8NDA8 1641 aa18.49■□□□□ 0.55
RNF4-216ENST00000511859 LRRC9Q6ZRR7 1453 aa18.48■□□□□ 0.55
RNF4-216ENST00000511859 SLAIN2Q9P270 581 aa18.45■□□□□ 0.54
RNF4-216ENST00000511859 JCADQ9P266 1359 aa18.45■□□□□ 0.54
RNF4-216ENST00000511859 DUOX2Q9NRD8 1548 aa18.44■□□□□ 0.54
RNF4-216ENST00000511859 SLC26A8Q96RN1 970 aa18.43■□□□□ 0.54
RNF4-216ENST00000511859 SETD1AO15047 1707 aaKnown RBP18.43■□□□□ 0.54
RNF4-216ENST00000511859 KDM5AP29375 1690 aaKnown RBP18.43■□□□□ 0.54
RNF4-216ENST00000511859 PIK3C2BO00750 1634 aa18.43■□□□□ 0.54
RNF4-216ENST00000511859 MAP3K1Q13233 1512 aa18.43■□□□□ 0.54
RNF4-216ENST00000511859 MSH6P52701 1360 aa18.43■□□□□ 0.54
RNF4-216ENST00000511859 UPF1Q92900 1129 aaKnown RBP eCLIP18.42■□□□□ 0.548e-14■■■■■ 57.5
RNF4-216ENST00000511859 RBM33Q96EV2 1170 aaKnown RBP18.42■□□□□ 0.54
RNF4-216ENST00000511859 TET3O43151 1660 aa18.42■□□□□ 0.54
RNF4-216ENST00000511859 PRDM15P57071 1507 aaPredicted RBP18.42■□□□□ 0.54
RNF4-216ENST00000511859 IDI1Q13907 227 aa18.42■□□□□ 0.54
RNF4-216ENST00000511859 PHLPP1O60346 1717 aa18.41■□□□□ 0.54
RNF4-216ENST00000511859 ZNF772Q68DY9 489 aaPredicted RBP18.41■□□□□ 0.54
RNF4-216ENST00000511859 EFCAB6Q5THR3 1501 aa18.4■□□□□ 0.54
RNF4-216ENST00000511859 NKTRP30414 1462 aaKnown RBP18.4■□□□□ 0.54
RNF4-216ENST00000511859 MYOM3Q5VTT5 1437 aa18.39■□□□□ 0.53
RNF4-216ENST00000511859 SPATA31A6Q5VVP1 1343 aa18.38■□□□□ 0.53
RNF4-216ENST00000511859 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.38■□□□□ 0.539e-7■■□□□ 12.4
RNF4-216ENST00000511859 KANK1Q14678 1352 aa18.37■□□□□ 0.53
RNF4-216ENST00000511859 ERBINQ96RT1 1412 aa18.37■□□□□ 0.53
RNF4-216ENST00000511859 KIF15Q9NS87 1388 aa18.37■□□□□ 0.53
RNF4-216ENST00000511859 BCANQ96GW7 911 aa18.36■□□□□ 0.53
RNF4-216ENST00000511859 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
RNF4-216ENST00000511859 RRP7BPQ9NSQ0 103 aa18.35■□□□□ 0.53
RNF4-216ENST00000511859 NWD1Q149M9 1564 aa18.35■□□□□ 0.53
RNF4-216ENST00000511859 FGD6Q6ZV73 1430 aa18.34■□□□□ 0.53
RNF4-216ENST00000511859 SLC52A1Q9NWF4 448 aa18.34■□□□□ 0.53
RNF4-216ENST00000511859 SRCAPQ6ZRS2 3230 aa18.33■□□□□ 0.53
RNF4-216ENST00000511859 TRIM52Q96A61 297 aa18.33■□□□□ 0.53
RNF4-216ENST00000511859 RXRBP28702 533 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms