RNA–Protein interactions for RNA: ENST00000509258.5

RNF4-212, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-212ENST00000509258 NCKAP5LQ9HCH0 1330 aa17.28■□□□□ 0.36
RNF4-212ENST00000509258 KDM5DQ9BY66 1539 aa17.27■□□□□ 0.36
RNF4-212ENST00000509258 A2ML1A8K2U0 1454 aa17.27■□□□□ 0.36
RNF4-212ENST00000509258 RSPH4AQ5TD94 716 aa17.27■□□□□ 0.36
RNF4-212ENST00000509258 MYOM3Q5VTT5 1437 aa17.27■□□□□ 0.35
RNF4-212ENST00000509258 MAST1Q9Y2H9 1570 aa17.27■□□□□ 0.35
RNF4-212ENST00000509258 DISP3Q9P2K9 1392 aa17.26■□□□□ 0.35
RNF4-212ENST00000509258 CROCC2H7BZ55 1655 aa17.26■□□□□ 0.35
RNF4-212ENST00000509258 PZPP20742 1482 aa17.24■□□□□ 0.35
RNF4-212ENST00000509258 ZNF335Q9H4Z2 1342 aaPredicted RBP17.24■□□□□ 0.35
RNF4-212ENST00000509258 KIF3BO15066 747 aa17.24■□□□□ 0.35
RNF4-212ENST00000509258 PTPN23Q9H3S7 1636 aa17.24■□□□□ 0.35
RNF4-212ENST00000509258 DNMT1P26358 1616 aaKnown RBP17.23■□□□□ 0.35
RNF4-212ENST00000509258 TNRQ92752 1358 aa17.23■□□□□ 0.35
RNF4-212ENST00000509258 MIA2Q96PC5 1412 aa17.21■□□□□ 0.35
RNF4-212ENST00000509258 MROH1Q8NDA8 1641 aa17.21■□□□□ 0.35
RNF4-212ENST00000509258 SPATA31D1Q6ZQQ2 1576 aa17.21■□□□□ 0.35
RNF4-212ENST00000509258 RNF17Q9BXT8 1623 aaKnown RBP17.21■□□□□ 0.35
RNF4-212ENST00000509258 WASHC2CQ9Y4E1 1318 aa17.21■□□□□ 0.34
RNF4-212ENST00000509258 TSPY4P0CV99 314 aa17.19■□□□□ 0.34
RNF4-212ENST00000509258 TSPY10P0CW01 314 aa17.19■□□□□ 0.34
RNF4-212ENST00000509258 CFAP65Q6ZU64 1925 aaKnown RBP17.19■□□□□ 0.34
RNF4-212ENST00000509258 CEP152O94986 1710 aa17.18■□□□□ 0.34
RNF4-212ENST00000509258 POLR1AO95602 1720 aaPredicted RBP17.18■□□□□ 0.34
RNF4-212ENST00000509258 NLRP1Q9C000 1473 aa17.18■□□□□ 0.34
RNF4-212ENST00000509258 ABCC5O15440 1437 aa17.17■□□□□ 0.34
RNF4-212ENST00000509258 FBXO31Q5XUX0 539 aaPredicted RBP17.17■□□□□ 0.34
RNF4-212ENST00000509258 EIF2AK4Q9P2K8 1649 aaKnown RBP17.17■□□□□ 0.34
RNF4-212ENST00000509258 NEURL4Q96JN8 1562 aa17.16■□□□□ 0.34
RNF4-212ENST00000509258 UBAP1LF5GYI3 381 aa17.16■□□□□ 0.34
RNF4-212ENST00000509258 FGD6Q6ZV73 1430 aa17.15■□□□□ 0.34
RNF4-212ENST00000509258 ZC3H13Q5T200 1668 aaKnown RBP17.14■□□□□ 0.33
RNF4-212ENST00000509258 CPS1P31327 1500 aa17.14■□□□□ 0.33
RNF4-212ENST00000509258 ABCC3O15438 1527 aa17.13■□□□□ 0.33
RNF4-212ENST00000509258 SOCS7O14512 581 aa17.13■□□□□ 0.33
RNF4-212ENST00000509258 ILDR2Q71H61 639 aa17.13■□□□□ 0.33
RNF4-212ENST00000509258 UGGT1Q9NYU2 1555 aa17.13■□□□□ 0.33
RNF4-212ENST00000509258 THEMISQ8N1K5 641 aaPredicted RBP17.12■□□□□ 0.33
RNF4-212ENST00000509258 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.12■□□□□ 0.33
RNF4-212ENST00000509258 DAPK1P53355 1430 aa17.12■□□□□ 0.33
RNF4-212ENST00000509258 SHANK2Q9UPX8 1470 aa17.12■□□□□ 0.33
RNF4-212ENST00000509258 ANKLE2Q86XL3 938 aa17.11■□□□□ 0.33
RNF4-212ENST00000509258 DUOX2Q9NRD8 1548 aa17.11■□□□□ 0.33
RNF4-212ENST00000509258 APLP2Q06481 763 aa17.1■□□□□ 0.33
RNF4-212ENST00000509258 DEPDC5O75140 1603 aa17.1■□□□□ 0.33
RNF4-212ENST00000509258 MED14O60244 1454 aa17.09■□□□□ 0.33
RNF4-212ENST00000509258 ERVK-7P63135 1459 aa17.07■□□□□ 0.32
RNF4-212ENST00000509258 NPHP4O75161 1426 aaPredicted RBP17.07■□□□□ 0.32
RNF4-212ENST00000509258 KIF15Q9NS87 1388 aa17.07■□□□□ 0.32
RNF4-212ENST00000509258 VWDEQ8N2E2 1590 aa17.06■□□□□ 0.32
RNF4-212ENST00000509258 PRDM15P57071 1507 aaPredicted RBP17.06■□□□□ 0.32
RNF4-212ENST00000509258 RRP7BPQ9NSQ0 103 aa17.05■□□□□ 0.32
RNF4-212ENST00000509258 IQGAP1P46940 1657 aa17.04■□□□□ 0.32
RNF4-212ENST00000509258 TOM1O60784 492 aa17.04■□□□□ 0.32
RNF4-212ENST00000509258 CHIC2Q9UKJ5 165 aa17.03■□□□□ 0.32
RNF4-212ENST00000509258 ERBINQ96RT1 1412 aa17.03■□□□□ 0.32
RNF4-212ENST00000509258 SCAF1Q9H7N4 1312 aaKnown RBP17.02■□□□□ 0.32
RNF4-212ENST00000509258 PIP4K2BP78356 416 aa17■□□□□ 0.31
RNF4-212ENST00000509258 UBR1Q8IWV7 1749 aa17■□□□□ 0.31
RNF4-212ENST00000509258 ADGRL2O95490 1459 aa16.99■□□□□ 0.31
RNF4-212ENST00000509258 SYNMO15061 1565 aa16.99■□□□□ 0.31
RNF4-212ENST00000509258 ARHGAP31Q2M1Z3 1444 aa16.99■□□□□ 0.31
RNF4-212ENST00000509258 SCAF11Q99590 1463 aaKnown RBP16.98■□□□□ 0.31
RNF4-212ENST00000509258 HSPA1LP34931 641 aa16.97■□□□□ 0.31
RNF4-212ENST00000509258 PPARGC1BQ86YN6 1023 aaKnown RBP16.97■□□□□ 0.31
RNF4-212ENST00000509258 FAM50AQ14320 339 aaKnown RBP16.96■□□□□ 0.31
RNF4-212ENST00000509258 STRCP1A6NGW2 1772 aa16.95■□□□□ 0.3
RNF4-212ENST00000509258 ARHGAP23Q9P227 1491 aa16.95■□□□□ 0.3
RNF4-212ENST00000509258 ANKRD30AQ9BXX3 1397 aa16.95■□□□□ 0.3
RNF4-212ENST00000509258 SLIT1O75093 1534 aa16.95■□□□□ 0.3
RNF4-212ENST00000509258 LRRC7Q96NW7 1537 aa16.95■□□□□ 0.3
RNF4-212ENST00000509258 MED1Q15648 1581 aaPredicted RBP16.94■□□□□ 0.3
RNF4-212ENST00000509258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.94■□□□□ 0.34e-7■■□□□ 12.7
RNF4-212ENST00000509258 PIK3C2BO00750 1634 aa16.94■□□□□ 0.3
RNF4-212ENST00000509258 ALKQ9UM73 1620 aa16.94■□□□□ 0.3
RNF4-212ENST00000509258 KANK1Q14678 1352 aa16.93■□□□□ 0.3
RNF4-212ENST00000509258 LMTK2Q8IWU2 1503 aa16.93■□□□□ 0.3
RNF4-212ENST00000509258 MYO5BQ9ULV0 1848 aa16.91■□□□□ 0.3
RNF4-212ENST00000509258 EFCAB6Q5THR3 1501 aa16.91■□□□□ 0.3
RNF4-212ENST00000509258 EID1Q9Y6B2 187 aa16.9■□□□□ 0.3
RNF4-212ENST00000509258 UNC13BO14795 1591 aa16.89■□□□□ 0.3
RNF4-212ENST00000509258 TXNDC2Q86VQ3 553 aa16.89■□□□□ 0.29
RNF4-212ENST00000509258 TMEM2Q9UHN6 1383 aa16.89■□□□□ 0.29
RNF4-212ENST00000509258 LTKP29376 864 aa16.88■□□□□ 0.29
RNF4-212ENST00000509258 KDM5AP29375 1690 aaKnown RBP16.88■□□□□ 0.29
RNF4-212ENST00000509258 ANKRD50Q9ULJ7 1429 aa16.87■□□□□ 0.29
RNF4-212ENST00000509258 TET3O43151 1660 aa16.86■□□□□ 0.29
RNF4-212ENST00000509258 GCC2Q8IWJ2 1684 aa16.86■□□□□ 0.29
RNF4-212ENST00000509258 STAG3Q9UJ98 1225 aa16.86■□□□□ 0.29
RNF4-212ENST00000509258 NOS1P29475 1434 aa16.85■□□□□ 0.29
RNF4-212ENST00000509258 E9PCH4 1651 aa16.85■□□□□ 0.29
RNF4-212ENST00000509258 XIRP1Q702N8 1843 aaKnown RBP16.82■□□□□ 0.28
RNF4-212ENST00000509258 ADGRB3O60242 1522 aa16.82■□□□□ 0.28
RNF4-212ENST00000509258 PHF23Q9BUL5 403 aaPredicted RBP16.82■□□□□ 0.28
RNF4-212ENST00000509258 IQGAP3Q86VI3 1631 aa16.81■□□□□ 0.28
RNF4-212ENST00000509258 IDI1Q13907 227 aa16.81■□□□□ 0.28
RNF4-212ENST00000509258 RPRD2Q5VT52 1461 aaKnown RBP16.8■□□□□ 0.28
RNF4-212ENST00000509258 ROCK1Q13464 1354 aa16.8■□□□□ 0.28
RNF4-212ENST00000509258 ITGAEP38570 1179 aa16.8■□□□□ 0.28
RNF4-212ENST00000509258 SENP3Q9H4L4 574 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms