RNA–Protein interactions for RNA: ENST00000508474.5

UBE2D3-224, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 2

Gene UBE2D3, Length 4,819 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-224ENST00000508474 TRAK2O60296 914 aa9.03□□□□□ -0.96
UBE2D3-224ENST00000508474 NOC3LQ8WTT2 800 aaKnown RBP9.03□□□□□ -0.96
UBE2D3-224ENST00000508474 ARGLU1Q9NWB6 273 aaPredicted RBP9.03□□□□□ -0.96
UBE2D3-224ENST00000508474 GOLGA6L19H0YKK7 550 aa9.02□□□□□ -0.97
UBE2D3-224ENST00000508474 CCDC88BA6NC98 1476 aa9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 CNTLNQ9NXG0 1405 aa9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 FRAT2O75474 233 aaPredicted RBP9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 PKD2Q13563 968 aa9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 NPM1P06748 294 aaKnown RBP eCLIP9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 BACH2Q9BYV9 841 aa9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 KIF3AQ9Y496 699 aa9.01□□□□□ -0.97
UBE2D3-224ENST00000508474 MSH5O43196 834 aa9□□□□□ -0.97
UBE2D3-224ENST00000508474 GNL2Q13823 731 aaKnown RBP9□□□□□ -0.97
UBE2D3-224ENST00000508474 CARMIL1Q5VZK9 1371 aa9□□□□□ -0.97
UBE2D3-224ENST00000508474 PLIN1O60240 522 aa9□□□□□ -0.97
UBE2D3-224ENST00000508474 APPP05067 770 aa9□□□□□ -0.97
UBE2D3-224ENST00000508474 CHMP4CQ96CF2 233 aa8.99□□□□□ -0.97
UBE2D3-224ENST00000508474 C22orf23Q9BZE7 217 aa8.99□□□□□ -0.97
UBE2D3-224ENST00000508474 ESPNB1AK53 854 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 ZKSCAN2Q63HK3 967 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 ACBD3Q9H3P7 528 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 BECN2A8MW95 431 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 U2AF1L5P0DN76 240 aaPredicted RBP8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 U2AF1Q01081 240 aaKnown RBP eCLIP8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 CHMP4AQ9BY43 222 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 REC8O95072 547 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 PDCL3Q9H2J4 239 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 NACADO15069 1562 aa8.98□□□□□ -0.97
UBE2D3-224ENST00000508474 LETM1O95202 739 aaPredicted RBP8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 CCDC70Q6NSX1 233 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 ZNF592Q92610 1267 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 CLUAP1Q96AJ1 413 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 ABCC8Q09428 1581 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 MBD3O95983 291 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 GRPEL1Q9HAV7 217 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 GPATCH3Q96I76 525 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 HDAC5Q9UQL6 1122 aa8.97□□□□□ -0.97
UBE2D3-224ENST00000508474 APBB1O00213 710 aa8.96□□□□□ -0.97
UBE2D3-224ENST00000508474 DDX19BQ9UMR2 479 aa8.96□□□□□ -0.97
UBE2D3-224ENST00000508474 CCDC7Q96M83 1385 aa8.96□□□□□ -0.97
UBE2D3-224ENST00000508474 POGKQ9P215 609 aa8.96□□□□□ -0.97
UBE2D3-224ENST00000508474 TRIM6-TRIM34B2RNG4 842 aa8.96□□□□□ -0.98
UBE2D3-224ENST00000508474 RBM10P98175 930 aaKnown RBP8.96□□□□□ -0.98
UBE2D3-224ENST00000508474 SMG6Q86US8 1419 aaKnown RBP8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 FOXD1Q16676 465 aa8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 MCTP1Q6DN14 999 aa8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 KANK1Q14678 1352 aa8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 TSPYL1Q9H0U9 437 aa8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 COG6Q9Y2V7 657 aa8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 BRD4O60885 1362 aaPredicted RBP8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 ANKRD30AQ9BXX3 1397 aa8.95□□□□□ -0.98
UBE2D3-224ENST00000508474 FOXD4L5Q5VV16 416 aaPredicted RBP8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 CHMP7Q8WUX9 453 aaPredicted RBP8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 FOXD4L4Q8WXT5 416 aaPredicted RBP8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 UQCRHLA0A096LP55 91 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 UQCRHP07919 91 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 IFT57Q9NWB7 429 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 ANKRD45Q5TZF3 282 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 CCDC146Q8IYE0 955 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 LMOD3Q0VAK6 560 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 PDCL2Q8N4E4 241 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 MNS1Q8NEH6 495 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 CCDC18Q5T9S5 1454 aa8.94□□□□□ -0.98
UBE2D3-224ENST00000508474 USP47Q96K76 1375 aa8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 TPM1P09493 284 aa8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 ZSCAN30Q86W11 494 aa8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 RTF1Q92541 710 aaKnown RBP8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 HSP90B1P14625 803 aaKnown RBP8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 HSP90B2PQ58FF3 399 aa8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 NOL8Q76FK4 1167 aaKnown RBP8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 CUX2O14529 1486 aa8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 HOMER1Q86YM7 354 aa8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 CCAR2Q8N163 923 aaKnown RBP8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 CIZ1Q9ULV3 898 aaPredicted RBP8.93□□□□□ -0.98
UBE2D3-224ENST00000508474 ZMYND15Q9H091 742 aa8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 CECR2Q9BXF3 1484 aa8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 NUP155O75694 1391 aa8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 SF3A1Q15459 793 aaKnown RBP8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 HDGFL2Q7Z4V5 671 aaPredicted RBP8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 TSPY26PQ9H489 355 aa8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 CAVIN1Q6NZI2 390 aaKnown RBP8.92□□□□□ -0.98
UBE2D3-224ENST00000508474 DHX8Q14562 1220 aaKnown RBP8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 INTS3Q68E01 1043 aaKnown RBP8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 TAOK2Q9UL54 1235 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 ERCC4Q92889 916 aaPredicted RBP8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 STK31Q9BXU1 1019 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 MCM4P33991 863 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 TSR1Q2NL82 804 aaKnown RBP8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 DZIP1LQ8IYY4 767 aaKnown RBP8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 AK7Q96M32 723 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 H3BQV1 296 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 CCP110O43303 1012 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 IFFO2Q5TF58 517 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 SASS6Q6UVJ0 657 aa8.91□□□□□ -0.98
UBE2D3-224ENST00000508474 NINLQ9Y2I6 1382 aa8.9□□□□□ -0.98
UBE2D3-224ENST00000508474 ST20-MTHFSA0A0A6YYL1 179 aa8.9□□□□□ -0.98
UBE2D3-224ENST00000508474 PANK3Q9H999 370 aa8.9□□□□□ -0.98
UBE2D3-224ENST00000508474 LEKR1Q6ZMV7 388 aa8.9□□□□□ -0.99
UBE2D3-224ENST00000508474 RDXP35241 583 aaKnown RBP8.89□□□□□ -0.99
UBE2D3-224ENST00000508474 SRPK2P78362 688 aaKnown RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 794 ms