RNA–Protein interactions for RNA: ENST00000504951.6

GYPB-204, Transcript of glycophorin B (MNS blood group), humanhuman

TSL 1 (best)

Gene GYPB, Length 632 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GYPB-204ENST00000504951 ABCC1P33527 1531 aa10.07□□□□□ -0.8
GYPB-204ENST00000504951 PTPRKQ15262 1439 aa10.07□□□□□ -0.8
GYPB-204ENST00000504951 KIDINS220Q9ULH0 1771 aa10.06□□□□□ -0.8
GYPB-204ENST00000504951 ZNF142P52746 1687 aaPredicted RBP10.06□□□□□ -0.8
GYPB-204ENST00000504951 MED1Q15648 1581 aaPredicted RBP10.06□□□□□ -0.8
GYPB-204ENST00000504951 CDC42BPBQ9Y5S2 1711 aa10.06□□□□□ -0.8
GYPB-204ENST00000504951 PITPNM1O00562 1244 aa10.04□□□□□ -0.8
GYPB-204ENST00000504951 RANGAP1P46060 587 aaPredicted RBP10.04□□□□□ -0.8
GYPB-204ENST00000504951 KIAA1107Q9UPP5 1409 aa10.04□□□□□ -0.8
GYPB-204ENST00000504951 CEP170BQ9Y4F5 1589 aaPredicted RBP10.04□□□□□ -0.8
GYPB-204ENST00000504951 PREX2Q70Z35 1606 aa10.03□□□□□ -0.8
GYPB-204ENST00000504951 A2ML1A8K2U0 1454 aa10.03□□□□□ -0.8
GYPB-204ENST00000504951 ARHGAP35Q9NRY4 1499 aa10.03□□□□□ -0.8
GYPB-204ENST00000504951 SPDYE2BA6NHP3 402 aa10.02□□□□□ -0.81
GYPB-204ENST00000504951 SPDYE6P0CI01 402 aa10.02□□□□□ -0.81
GYPB-204ENST00000504951 SPDYE2Q495Y8 402 aa10.02□□□□□ -0.81
GYPB-204ENST00000504951 SHANK2Q9UPX8 1470 aa10.02□□□□□ -0.81
GYPB-204ENST00000504951 ITSN2Q9NZM3 1697 aa10.02□□□□□ -0.81
GYPB-204ENST00000504951 PLXNC1O60486 1568 aa10.01□□□□□ -0.81
GYPB-204ENST00000504951 SAMD9LQ8IVG5 1584 aa10.01□□□□□ -0.81
GYPB-204ENST00000504951 FXR2P51116 673 aaKnown RBP eCLIP10.01□□□□□ -0.81
GYPB-204ENST00000504951 SPAG9O60271 1321 aaKnown RBP10.01□□□□□ -0.81
GYPB-204ENST00000504951 MYO3AQ8NEV4 1616 aa10□□□□□ -0.81
GYPB-204ENST00000504951 MED14O60244 1454 aa9.99□□□□□ -0.81
GYPB-204ENST00000504951 A2MP01023 1474 aa9.99□□□□□ -0.81
GYPB-204ENST00000504951 CCDC18Q5T9S5 1454 aa9.99□□□□□ -0.81
GYPB-204ENST00000504951 PLEKHH2Q8IVE3 1493 aa9.99□□□□□ -0.81
GYPB-204ENST00000504951 ATP1B4Q9UN42 357 aaPredicted RBP9.99□□□□□ -0.81
GYPB-204ENST00000504951 DNMT1P26358 1616 aaKnown RBP9.99□□□□□ -0.81
GYPB-204ENST00000504951 FAM135AQ9P2D6 1515 aa9.98□□□□□ -0.81
GYPB-204ENST00000504951 ANKLE2Q86XL3 938 aa9.98□□□□□ -0.81
GYPB-204ENST00000504951 THEMISQ8N1K5 641 aaPredicted RBP9.98□□□□□ -0.81
GYPB-204ENST00000504951 CASKIN1Q8WXD9 1431 aa9.98□□□□□ -0.81
GYPB-204ENST00000504951 PIP4K2BP78356 416 aa9.97□□□□□ -0.81
GYPB-204ENST00000504951 RTEL1-TNFRSF6BF6WH68 1400 aa9.97□□□□□ -0.81
GYPB-204ENST00000504951 GPATCH8Q9UKJ3 1502 aaKnown RBP9.97□□□□□ -0.81
GYPB-204ENST00000504951 ALKQ9UM73 1620 aa9.96□□□□□ -0.81
GYPB-204ENST00000504951 HAX1O00165 279 aa9.96□□□□□ -0.82
GYPB-204ENST00000504951 ATP7AQ04656 1500 aa9.96□□□□□ -0.82
GYPB-204ENST00000504951 NEURL4Q96JN8 1562 aa9.96□□□□□ -0.82
GYPB-204ENST00000504951 CLTCQ00610 1675 aaKnown RBP9.96□□□□□ -0.82
GYPB-204ENST00000504951 CDC42BPAQ5VT25 1732 aa9.96□□□□□ -0.82
GYPB-204ENST00000504951 HNRNPMP52272 730 aaKnown RBP eCLIP9.95□□□□□ -0.82
GYPB-204ENST00000504951 GGT6Q6P531 493 aa9.95□□□□□ -0.82
GYPB-204ENST00000504951 RGS17Q9UGC6 210 aaPredicted RBP9.95□□□□□ -0.82
GYPB-204ENST00000504951 VWDEQ8N2E2 1590 aa9.95□□□□□ -0.82
GYPB-204ENST00000504951 SUPT6HQ7KZ85 1726 aaKnown RBP9.95□□□□□ -0.82
GYPB-204ENST00000504951 DEPDC5O75140 1603 aa9.94□□□□□ -0.82
GYPB-204ENST00000504951 INO80Q9ULG1 1556 aaPredicted RBP9.94□□□□□ -0.82
GYPB-204ENST00000504951 DHX29Q7Z478 1369 aaKnown RBP9.94□□□□□ -0.82
GYPB-204ENST00000504951 UBTFP17480 764 aaKnown RBP9.94□□□□□ -0.82
GYPB-204ENST00000504951 LRRIQ1Q96JM4 1722 aa9.93□□□□□ -0.82
GYPB-204ENST00000504951 NLRP1Q9C000 1473 aa9.93□□□□□ -0.82
GYPB-204ENST00000504951 TNRQ92752 1358 aa9.93□□□□□ -0.82
GYPB-204ENST00000504951 PZPP20742 1482 aa9.92□□□□□ -0.82
GYPB-204ENST00000504951 MIA2Q96PC5 1412 aa9.92□□□□□ -0.82
GYPB-204ENST00000504951 RSPH4AQ5TD94 716 aa9.92□□□□□ -0.82
GYPB-204ENST00000504951 CFDP1Q9UEE9 299 aaPredicted RBP9.92□□□□□ -0.82
GYPB-204ENST00000504951 POLR1AO95602 1720 aaPredicted RBP9.92□□□□□ -0.82
GYPB-204ENST00000504951 SYCP2Q9BX26 1530 aa9.92□□□□□ -0.82
GYPB-204ENST00000504951 NPHP4O75161 1426 aaPredicted RBP9.91□□□□□ -0.82
GYPB-204ENST00000504951 ADGBQ8N7X0 1667 aa9.91□□□□□ -0.82
GYPB-204ENST00000504951 LRRC7Q96NW7 1537 aa9.91□□□□□ -0.82
GYPB-204ENST00000504951 MBD5Q9P267 1494 aa9.91□□□□□ -0.82
GYPB-204ENST00000504951 ZNF777Q9ULD5 760 aaPredicted RBP9.9□□□□□ -0.82
GYPB-204ENST00000504951 FAM135BQ49AJ0 1406 aa9.9□□□□□ -0.83
GYPB-204ENST00000504951 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.89□□□□□ -0.83
GYPB-204ENST00000504951 FBXO31Q5XUX0 539 aaPredicted RBP9.89□□□□□ -0.83
GYPB-204ENST00000504951 SPDYE1Q8NFV5 336 aaPredicted RBP9.89□□□□□ -0.83
GYPB-204ENST00000504951 FYCO1Q9BQS8 1478 aa9.88□□□□□ -0.83
GYPB-204ENST00000504951 UGGT1Q9NYU2 1555 aa9.88□□□□□ -0.83
GYPB-204ENST00000504951 SYNMO15061 1565 aa9.87□□□□□ -0.83
GYPB-204ENST00000504951 CCNB3Q8WWL7 1395 aa9.87□□□□□ -0.83
GYPB-204ENST00000504951 KDM5DQ9BY66 1539 aa9.87□□□□□ -0.83
GYPB-204ENST00000504951 WASHC2CQ9Y4E1 1318 aa9.86□□□□□ -0.83
GYPB-204ENST00000504951 RNF17Q9BXT8 1623 aaKnown RBP9.86□□□□□ -0.83
GYPB-204ENST00000504951 KIF3BO15066 747 aa9.85□□□□□ -0.83
GYPB-204ENST00000504951 IQGAP1P46940 1657 aa9.84□□□□□ -0.83
GYPB-204ENST00000504951 POTEAQ6S8J7 498 aa9.84□□□□□ -0.83
GYPB-204ENST00000504951 ZNF692Q9BU19 519 aaPredicted RBP9.84□□□□□ -0.83
GYPB-204ENST00000504951 EHMT2Q96KQ7 1210 aa9.83□□□□□ -0.84
GYPB-204ENST00000504951 CLEC11AQ9Y240 323 aa9.83□□□□□ -0.84
GYPB-204ENST00000504951 STRCP1A6NGW2 1772 aa9.83□□□□□ -0.84
GYPB-204ENST00000504951 SSUH2Q9Y2M2 353 aa9.82□□□□□ -0.84
GYPB-204ENST00000504951 ARHGAP23Q9P227 1491 aa9.81□□□□□ -0.84
GYPB-204ENST00000504951 MKRN4PQ13434 485 aaPredicted RBP9.81□□□□□ -0.84
GYPB-204ENST00000504951 ZNF644Q9H582 1327 aaPredicted RBP9.81□□□□□ -0.84
GYPB-204ENST00000504951 PRKAR2AP13861 404 aaKnown RBP9.8□□□□□ -0.84
GYPB-204ENST00000504951 SLIT1O75093 1534 aa9.8□□□□□ -0.84
GYPB-204ENST00000504951 CEP162Q5TB80 1403 aa9.8□□□□□ -0.84
GYPB-204ENST00000504951 ZC3H13Q5T200 1668 aaKnown RBP9.8□□□□□ -0.84
GYPB-204ENST00000504951 MTUS2Q5JR59 1369 aa9.79□□□□□ -0.84
GYPB-204ENST00000504951 CCDC141Q6ZP82 1450 aa9.79□□□□□ -0.84
GYPB-204ENST00000504951 SCAF11Q99590 1463 aaKnown RBP9.79□□□□□ -0.84
GYPB-204ENST00000504951 LTKP29376 864 aa9.78□□□□□ -0.84
GYPB-204ENST00000504951 ARHGAP31Q2M1Z3 1444 aa9.77□□□□□ -0.85
GYPB-204ENST00000504951 TSPY4P0CV99 314 aa9.77□□□□□ -0.85
GYPB-204ENST00000504951 TSPY10P0CW01 314 aa9.77□□□□□ -0.85
GYPB-204ENST00000504951 KCNA6P17658 529 aa9.77□□□□□ -0.85
GYPB-204ENST00000504951 TXNDC2Q86VQ3 553 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms