RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 HNRNPMP52272 730 aaKnown RBP eCLIP16.66■□□□□ 0.261e-7■■■■□ 25.9
NUP54-202ENST00000502850 RALGAPBQ86X10 1494 aa16.66■□□□□ 0.26
NUP54-202ENST00000502850 DUOX2Q9NRD8 1548 aa16.66■□□□□ 0.26
NUP54-202ENST00000502850 IQGAP3Q86VI3 1631 aa16.65■□□□□ 0.26
NUP54-202ENST00000502850 NBPF8Q3BBV2 869 aa16.65■□□□□ 0.26
NUP54-202ENST00000502850 KDM5CP41229 1560 aa16.64■□□□□ 0.25
NUP54-202ENST00000502850 ARID4BQ4LE39 1312 aaPredicted RBP16.63■□□□□ 0.25
NUP54-202ENST00000502850 PLCH2O75038 1416 aa16.63■□□□□ 0.25
NUP54-202ENST00000502850 ERBINQ96RT1 1412 aa16.62■□□□□ 0.25
NUP54-202ENST00000502850 ABCC1P33527 1531 aa16.62■□□□□ 0.25
NUP54-202ENST00000502850 ADGRL1O94910 1474 aa16.61■□□□□ 0.25
NUP54-202ENST00000502850 MAGI2Q86UL8 1455 aa16.61■□□□□ 0.25
NUP54-202ENST00000502850 SUPT16HQ9Y5B9 1047 aaKnown RBP16.59■□□□□ 0.25
NUP54-202ENST00000502850 USP47Q96K76 1375 aa16.59■□□□□ 0.25
NUP54-202ENST00000502850 NEO1Q92859 1461 aa16.58■□□□□ 0.24
NUP54-202ENST00000502850 EFCAB2Q5VUJ9 269 aa16.57■□□□□ 0.24
NUP54-202ENST00000502850 ROCK2O75116 1388 aaKnown RBP16.57■□□□□ 0.24
NUP54-202ENST00000502850 CCDC144AA2RUR9 1427 aa16.56■□□□□ 0.24
NUP54-202ENST00000502850 KIF7Q2M1P5 1343 aa16.56■□□□□ 0.24
NUP54-202ENST00000502850 LAMC1P11047 1609 aa16.55■□□□□ 0.24
NUP54-202ENST00000502850 EIF2AK4Q9P2K8 1649 aaKnown RBP16.55■□□□□ 0.24
NUP54-202ENST00000502850 ATP10AO60312 1499 aa16.54■□□□□ 0.24
NUP54-202ENST00000502850 RTEL1-TNFRSF6BF6WH68 1400 aa16.54■□□□□ 0.24
NUP54-202ENST00000502850 RAPGEF3O95398 923 aa16.54■□□□□ 0.24
NUP54-202ENST00000502850 NEFLP07196 543 aa16.53■□□□□ 0.24
NUP54-202ENST00000502850 TRPM1Q7Z4N2 1603 aa16.52■□□□□ 0.24
NUP54-202ENST00000502850 BCORL1Q5H9F3 1711 aa16.52■□□□□ 0.24
NUP54-202ENST00000502850 PRKRIP1Q9H875 184 aaPredicted RBP16.51■□□□□ 0.23
NUP54-202ENST00000502850 C11orf95C9JLR9 678 aaPredicted RBP16.5■□□□□ 0.23
NUP54-202ENST00000502850 ZFYVE16Q7Z3T8 1539 aa16.5■□□□□ 0.23
NUP54-202ENST00000502850 FANCAO15360 1455 aa16.49■□□□□ 0.23
NUP54-202ENST00000502850 ZNF326Q5BKZ1 582 aaKnown RBP16.49■□□□□ 0.23
NUP54-202ENST00000502850 CFAP74Q9C0B2 1584 aa16.49■□□□□ 0.23
NUP54-202ENST00000502850 DEPDC5O75140 1603 aa16.48■□□□□ 0.23
NUP54-202ENST00000502850 CARD11Q9BXL7 1154 aa16.48■□□□□ 0.23
NUP54-202ENST00000502850 PRAG1Q86YV5 1406 aa16.48■□□□□ 0.23
NUP54-202ENST00000502850 FRMPD1Q5SYB0 1578 aa16.48■□□□□ 0.23
NUP54-202ENST00000502850 INO80Q9ULG1 1556 aaPredicted RBP16.47■□□□□ 0.23
NUP54-202ENST00000502850 RICTORQ6R327 1708 aa16.45■□□□□ 0.22
NUP54-202ENST00000502850 E9PCH4 1651 aa16.45■□□□□ 0.22
NUP54-202ENST00000502850 HNRNPUQ00839 825 aaKnown RBP eCLIP16.45■□□□□ 0.22
NUP54-202ENST00000502850 KTN1Q86UP2 1357 aaKnown RBP16.44■□□□□ 0.22
NUP54-202ENST00000502850 TRAPPC8Q9Y2L5 1435 aa16.44■□□□□ 0.22
NUP54-202ENST00000502850 PLA2R1Q13018 1463 aa16.44■□□□□ 0.22
NUP54-202ENST00000502850 DCAF11Q8TEB1 546 aa16.44■□□□□ 0.22
NUP54-202ENST00000502850 SPAG9O60271 1321 aaKnown RBP16.44■□□□□ 0.22
NUP54-202ENST00000502850 GPRASP1Q5JY77 1395 aa16.44■□□□□ 0.22
NUP54-202ENST00000502850 ATP7AQ04656 1500 aa16.43■□□□□ 0.22
NUP54-202ENST00000502850 TET3O43151 1660 aa16.43■□□□□ 0.22
NUP54-202ENST00000502850 A2MP01023 1474 aa16.43■□□□□ 0.22
NUP54-202ENST00000502850 DHX29Q7Z478 1369 aaKnown RBP16.42■□□□□ 0.22
NUP54-202ENST00000502850 TRPM2O94759 1503 aa16.42■□□□□ 0.22
NUP54-202ENST00000502850 PRDM15P57071 1507 aaPredicted RBP16.42■□□□□ 0.22
NUP54-202ENST00000502850 CEP152O94986 1710 aa16.42■□□□□ 0.22
NUP54-202ENST00000502850 SPHKAPQ2M3C7 1700 aa16.42■□□□□ 0.22
NUP54-202ENST00000502850 MRS2Q9HD23 443 aa16.41■□□□□ 0.22
NUP54-202ENST00000502850 RNF17Q9BXT8 1623 aaKnown RBP16.41■□□□□ 0.22
NUP54-202ENST00000502850 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.4■□□□□ 0.22
NUP54-202ENST00000502850 NEURL4Q96JN8 1562 aa16.39■□□□□ 0.21
NUP54-202ENST00000502850 FKBP8Q14318 412 aa16.39■□□□□ 0.21
NUP54-202ENST00000502850 KDM2AQ9Y2K7 1162 aa16.39■□□□□ 0.21
NUP54-202ENST00000502850 SCAPERQ9BY12 1400 aa16.39■□□□□ 0.21
NUP54-202ENST00000502850 KANK1Q14678 1352 aa16.38■□□□□ 0.21
NUP54-202ENST00000502850 STAC3Q96MF2 364 aa16.38■□□□□ 0.21
NUP54-202ENST00000502850 ADAMTSL3P82987 1691 aa16.38■□□□□ 0.21
NUP54-202ENST00000502850 ARHGEF40Q8TER5 1519 aa16.38■□□□□ 0.21
NUP54-202ENST00000502850 ZBED9Q6R2W3 1325 aa16.38■□□□□ 0.21
NUP54-202ENST00000502850 VWDEQ8N2E2 1590 aa16.37■□□□□ 0.21
NUP54-202ENST00000502850 ZMYM4Q5VZL5 1548 aa16.37■□□□□ 0.21
NUP54-202ENST00000502850 ST20-MTHFSA0A0A6YYL1 179 aa16.34■□□□□ 0.21
NUP54-202ENST00000502850 PTPRTO14522 1441 aa16.34■□□□□ 0.21
NUP54-202ENST00000502850 POGZQ7Z3K3 1410 aa16.34■□□□□ 0.21
NUP54-202ENST00000502850 HECW2Q9P2P5 1572 aa16.34■□□□□ 0.21
NUP54-202ENST00000502850 ERICH6BQ5W0A0 696 aa16.34■□□□□ 0.21
NUP54-202ENST00000502850 MADDQ8WXG6 1647 aa16.33■□□□□ 0.21
NUP54-202ENST00000502850 YEATS2Q9ULM3 1422 aa16.33■□□□□ 0.2
NUP54-202ENST00000502850 POLR3GLQ9BT43 218 aa16.32■□□□□ 0.2
NUP54-202ENST00000502850 KIAA1210Q9ULL0 1709 aa16.32■□□□□ 0.2
NUP54-202ENST00000502850 PTPRMP28827 1452 aa16.32■□□□□ 0.2
NUP54-202ENST00000502850 RALBP1Q15311 655 aa16.31■□□□□ 0.2
NUP54-202ENST00000502850 ZNF518AQ6AHZ1 1483 aa16.31■□□□□ 0.2
NUP54-202ENST00000502850 IQGAP1P46940 1657 aa16.3■□□□□ 0.2
NUP54-202ENST00000502850 FAM9BQ8IZU0 186 aa16.3■□□□□ 0.2
NUP54-202ENST00000502850 CLTCL1P53675 1640 aa16.3■□□□□ 0.2
NUP54-202ENST00000502850 RGL3Q3MIN7 710 aa16.29■□□□□ 0.2
NUP54-202ENST00000502850 CCDC184Q52MB2 194 aa16.29■□□□□ 0.2
NUP54-202ENST00000502850 MROH1Q8NDA8 1641 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 BRD4O60885 1362 aaPredicted RBP16.28■□□□□ 0.2
NUP54-202ENST00000502850 KIDINS220Q9ULH0 1771 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 AFAP1Q8N556 730 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 SIGLEC1Q9BZZ2 1709 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 WASHC2CQ9Y4E1 1318 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 EFCAB6Q5THR3 1501 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 LMTK2Q8IWU2 1503 aa16.28■□□□□ 0.2
NUP54-202ENST00000502850 MYBBP1AQ9BQG0 1328 aaKnown RBP16.27■□□□□ 0.2
NUP54-202ENST00000502850 KIF1BO60333 1816 aa16.26■□□□□ 0.19
NUP54-202ENST00000502850 RIMS1Q86UR5 1692 aaKnown RBP16.26■□□□□ 0.19
NUP54-202ENST00000502850 MYT1LQ9UL68 1186 aa16.25■□□□□ 0.19
NUP54-202ENST00000502850 TMF1P82094 1093 aa16.24■□□□□ 0.19
NUP54-202ENST00000502850 MLECQ14165 292 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms