RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 CCDC141Q6ZP82 1450 aa23.71■■□□□ 1.39
TRAF4-212ENST00000498540 CAMSAP2Q08AD1 1489 aa23.7■■□□□ 1.38
TRAF4-212ENST00000498540 NEURL4Q96JN8 1562 aa23.69■■□□□ 1.38
TRAF4-212ENST00000498540 KDM5DQ9BY66 1539 aa23.69■■□□□ 1.38
TRAF4-212ENST00000498540 NCOA2Q15596 1464 aa23.68■■□□□ 1.38
TRAF4-212ENST00000498540 PZPP20742 1482 aa23.68■■□□□ 1.38
TRAF4-212ENST00000498540 TNRQ92752 1358 aa23.67■■□□□ 1.38
TRAF4-212ENST00000498540 KIF3BO15066 747 aa23.67■■□□□ 1.38
TRAF4-212ENST00000498540 FBXO31Q5XUX0 539 aaPredicted RBP23.67■■□□□ 1.38
TRAF4-212ENST00000498540 FAM135AQ9P2D6 1515 aa23.67■■□□□ 1.38
TRAF4-212ENST00000498540 ARHGEF5Q12774 1597 aa23.61■■□□□ 1.37
TRAF4-212ENST00000498540 CPS1P31327 1500 aa23.6■■□□□ 1.37
TRAF4-212ENST00000498540 WASHC2CQ9Y4E1 1318 aa23.59■■□□□ 1.37
TRAF4-212ENST00000498540 SHANK2Q9UPX8 1470 aa23.58■■□□□ 1.37
TRAF4-212ENST00000498540 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.58■■□□□ 1.371e-7■■□□□ 12.7
TRAF4-212ENST00000498540 RSPH4AQ5TD94 716 aa23.57■■□□□ 1.36
TRAF4-212ENST00000498540 MIA2Q96PC5 1412 aa23.57■■□□□ 1.36
TRAF4-212ENST00000498540 VWDEQ8N2E2 1590 aa23.57■■□□□ 1.36
TRAF4-212ENST00000498540 NLRP1Q9C000 1473 aa23.56■■□□□ 1.36
TRAF4-212ENST00000498540 UGGT1Q9NYU2 1555 aa23.56■■□□□ 1.36
TRAF4-212ENST00000498540 RNF17Q9BXT8 1623 aaKnown RBP23.55■■□□□ 1.36
TRAF4-212ENST00000498540 DEPDC5O75140 1603 aa23.55■■□□□ 1.36
TRAF4-212ENST00000498540 SCAF1Q9H7N4 1312 aaKnown RBP23.54■■□□□ 1.36
TRAF4-212ENST00000498540 HSPA1LP34931 641 aa23.52■■□□□ 1.36
TRAF4-212ENST00000498540 PIP4K2BP78356 416 aa23.52■■□□□ 1.36
TRAF4-212ENST00000498540 ANKLE2Q86XL3 938 aa23.52■■□□□ 1.36
TRAF4-212ENST00000498540 ZC3H13Q5T200 1668 aaKnown RBP23.51■■□□□ 1.35
TRAF4-212ENST00000498540 MED14O60244 1454 aa23.51■■□□□ 1.35
TRAF4-212ENST00000498540 ABCC3O15438 1527 aa23.51■■□□□ 1.35
TRAF4-212ENST00000498540 THEMISQ8N1K5 641 aaPredicted RBP23.51■■□□□ 1.35
TRAF4-212ENST00000498540 MED1Q15648 1581 aaPredicted RBP23.51■■□□□ 1.35
TRAF4-212ENST00000498540 MAST1Q9Y2H9 1570 aa23.51■■□□□ 1.35
TRAF4-212ENST00000498540 IQGAP1P46940 1657 aa23.51■■□□□ 1.35
TRAF4-212ENST00000498540 NPHP4O75161 1426 aaPredicted RBP23.5■■□□□ 1.35
TRAF4-212ENST00000498540 TSPY4P0CV99 314 aa23.5■■□□□ 1.35
TRAF4-212ENST00000498540 TSPY10P0CW01 314 aa23.5■■□□□ 1.35
TRAF4-212ENST00000498540 LRRC9Q6ZRR7 1453 aa23.49■■□□□ 1.35
TRAF4-212ENST00000498540 ALKQ9UM73 1620 aa23.49■■□□□ 1.35
TRAF4-212ENST00000498540 TOM1O60784 492 aa23.49■■□□□ 1.35
TRAF4-212ENST00000498540 EIF2AK4Q9P2K8 1649 aaKnown RBP23.48■■□□□ 1.35
TRAF4-212ENST00000498540 MROH1Q8NDA8 1641 aa23.48■■□□□ 1.35
TRAF4-212ENST00000498540 STRCP1A6NGW2 1772 aa23.47■■□□□ 1.35
TRAF4-212ENST00000498540 CEP152O94986 1710 aa23.46■■□□□ 1.35
TRAF4-212ENST00000498540 ERVK-7P63135 1459 aa23.45■■□□□ 1.34
TRAF4-212ENST00000498540 VPS8Q8N3P4 1428 aa23.44■■□□□ 1.34
TRAF4-212ENST00000498540 UBR1Q8IWV7 1749 aa23.41■■□□□ 1.34
TRAF4-212ENST00000498540 CFAP65Q6ZU64 1925 aaKnown RBP23.41■■□□□ 1.34
TRAF4-212ENST00000498540 SYNMO15061 1565 aa23.39■■□□□ 1.33
TRAF4-212ENST00000498540 LRRC7Q96NW7 1537 aa23.38■■□□□ 1.33
TRAF4-212ENST00000498540 KANK4Q5T7N3 995 aaPredicted RBP23.38■■□□□ 1.33
TRAF4-212ENST00000498540 MYOM3Q5VTT5 1437 aa23.38■■□□□ 1.33
TRAF4-212ENST00000498540 DUOX2Q9NRD8 1548 aa23.36■■□□□ 1.33
TRAF4-212ENST00000498540 MAP3K1Q13233 1512 aa23.35■■□□□ 1.33
TRAF4-212ENST00000498540 PRDM15P57071 1507 aaPredicted RBP23.33■■□□□ 1.33
TRAF4-212ENST00000498540 CROCC2H7BZ55 1655 aa23.33■■□□□ 1.33
TRAF4-212ENST00000498540 SCAF11Q99590 1463 aaKnown RBP23.33■■□□□ 1.33
TRAF4-212ENST00000498540 ARHGAP23Q9P227 1491 aa23.3■■□□□ 1.32
TRAF4-212ENST00000498540 LOC105371045A0A1W2PR82 267 aa23.3■■□□□ 1.32
TRAF4-212ENST00000498540 SLIT1O75093 1534 aa23.29■■□□□ 1.32
TRAF4-212ENST00000498540 SENP3Q9H4L4 574 aaPredicted RBP23.29■■□□□ 1.32
TRAF4-212ENST00000498540 KIF15Q9NS87 1388 aa23.28■■□□□ 1.32
TRAF4-212ENST00000498540 XIRP1Q702N8 1843 aaKnown RBP23.28■■□□□ 1.32
TRAF4-212ENST00000498540 ARHGAP31Q2M1Z3 1444 aa23.27■■□□□ 1.32
TRAF4-212ENST00000498540 LTKP29376 864 aa23.27■■□□□ 1.32
TRAF4-212ENST00000498540 PIK3C2BO00750 1634 aa23.26■■□□□ 1.31
TRAF4-212ENST00000498540 ERBINQ96RT1 1412 aa23.26■■□□□ 1.31
TRAF4-212ENST00000498540 PTPN23Q9H3S7 1636 aa23.26■■□□□ 1.31
TRAF4-212ENST00000498540 ABCC5O15440 1437 aa23.25■■□□□ 1.31
TRAF4-212ENST00000498540 PHF23Q9BUL5 403 aaPredicted RBP23.25■■□□□ 1.31
TRAF4-212ENST00000498540 TXNDC2Q86VQ3 553 aa23.23■■□□□ 1.31
TRAF4-212ENST00000498540 RRP7BPQ9NSQ0 103 aa23.22■■□□□ 1.31
TRAF4-212ENST00000498540 DAPK1P53355 1430 aa23.2■■□□□ 1.3
TRAF4-212ENST00000498540 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.19■■□□□ 1.32e-8■■■□□ 16.3
TRAF4-212ENST00000498540 TMEM2Q9UHN6 1383 aa23.17■■□□□ 1.3
TRAF4-212ENST00000498540 KDM5AP29375 1690 aaKnown RBP23.17■■□□□ 1.3
TRAF4-212ENST00000498540 EID1Q9Y6B2 187 aa23.17■■□□□ 1.3
TRAF4-212ENST00000498540 EFCAB6Q5THR3 1501 aa23.16■■□□□ 1.3
TRAF4-212ENST00000498540 LMTK2Q8IWU2 1503 aa23.15■■□□□ 1.3
TRAF4-212ENST00000498540 KANK1Q14678 1352 aa23.14■■□□□ 1.3
TRAF4-212ENST00000498540 FGD6Q6ZV73 1430 aa23.14■■□□□ 1.29
TRAF4-212ENST00000498540 STAG3Q9UJ98 1225 aa23.11■■□□□ 1.29
TRAF4-212ENST00000498540 TET3O43151 1660 aa23.1■■□□□ 1.29
TRAF4-212ENST00000498540 IDI1Q13907 227 aa23.1■■□□□ 1.29
TRAF4-212ENST00000498540 RGS17Q9UGC6 210 aaPredicted RBP23.09■■□□□ 1.29
TRAF4-212ENST00000498540 CHIC2Q9UKJ5 165 aa23.09■■□□□ 1.29
TRAF4-212ENST00000498540 TMEM94Q12767 1356 aa23.09■■□□□ 1.29
TRAF4-212ENST00000498540 ANKRD30AQ9BXX3 1397 aa23.09■■□□□ 1.29
TRAF4-212ENST00000498540 ADGRB3O60242 1522 aa23.08■■□□□ 1.29
TRAF4-212ENST00000498540 NOS1P29475 1434 aa23.08■■□□□ 1.28
TRAF4-212ENST00000498540 FAM135BQ49AJ0 1406 aa23.08■■□□□ 1.28
TRAF4-212ENST00000498540 ROBO1Q9Y6N7 1651 aa23.06■■□□□ 1.28
TRAF4-212ENST00000498540 APLP2Q06481 763 aa23.06■■□□□ 1.28
TRAF4-212ENST00000498540 SLC26A8Q96RN1 970 aa23.05■■□□□ 1.28
TRAF4-212ENST00000498540 NWD1Q149M9 1564 aa23.05■■□□□ 1.28
TRAF4-212ENST00000498540 KCNA6P17658 529 aa23.04■■□□□ 1.28
TRAF4-212ENST00000498540 RBM33Q96EV2 1170 aaKnown RBP23.03■■□□□ 1.28
TRAF4-212ENST00000498540 ADGRL2O95490 1459 aa23.02■■□□□ 1.28
TRAF4-212ENST00000498540 MYO5BQ9ULV0 1848 aa23.01■■□□□ 1.27
TRAF4-212ENST00000498540 NKTRP30414 1462 aaKnown RBP23.01■■□□□ 1.27
TRAF4-212ENST00000498540 PROSER2Q86WR7 435 aaPredicted RBP23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms