RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 EPAS1Q99814 870 aa12.08□□□□□ -0.48
SMC4-227ENST00000497984 PROX2Q3B8N5 592 aa12.07□□□□□ -0.48
SMC4-227ENST00000497984 MRPL50Q8N5N7 158 aaKnown RBP12.06□□□□□ -0.48
SMC4-227ENST00000497984 PDIA6Q15084 440 aa12.05□□□□□ -0.48
SMC4-227ENST00000497984 THSD4Q6ZMP0 1018 aa12.05□□□□□ -0.48
SMC4-227ENST00000497984 C6orf132Q5T0Z8 1188 aa12.04□□□□□ -0.48
SMC4-227ENST00000497984 DDX12PQ92771 950 aa12.04□□□□□ -0.48
SMC4-227ENST00000497984 NBPF3Q9H094 633 aa12.04□□□□□ -0.48
SMC4-227ENST00000497984 RABGEF1Q9UJ41 708 aa12.04□□□□□ -0.48
SMC4-227ENST00000497984 PTPN5P54829 565 aa12.03□□□□□ -0.48
SMC4-227ENST00000497984 WNT2BQ93097 391 aa12.02□□□□□ -0.49
SMC4-227ENST00000497984 E2F4Q16254 413 aa12.01□□□□□ -0.49
SMC4-227ENST00000497984 GOLGA8CPA6NN73 597 aa12□□□□□ -0.49
SMC4-227ENST00000497984 ARIH1Q9Y4X5 557 aaPredicted RBP12□□□□□ -0.49
SMC4-227ENST00000497984 SPDYE16A6NNV3 312 aaPredicted RBP11.99□□□□□ -0.49
SMC4-227ENST00000497984 RBM33Q96EV2 1170 aaKnown RBP11.99□□□□□ -0.49
SMC4-227ENST00000497984 ONECUT3O60422 494 aaPredicted RBP11.97□□□□□ -0.49
SMC4-227ENST00000497984 EN1Q05925 392 aaPredicted RBP11.97□□□□□ -0.49
SMC4-227ENST00000497984 NBR1Q14596 966 aa11.97□□□□□ -0.49
SMC4-227ENST00000497984 KIAA1468Q9P260 1216 aa11.96□□□□□ -0.49
SMC4-227ENST00000497984 WDR70Q9NW82 654 aa11.95□□□□□ -0.5
SMC4-227ENST00000497984 TRIM6-TRIM34B2RNG4 842 aa11.94□□□□□ -0.5
SMC4-227ENST00000497984 TSR1Q2NL82 804 aaKnown RBP11.94□□□□□ -0.5
SMC4-227ENST00000497984 LAPTM4BQ86VI4 370 aa11.94□□□□□ -0.5
SMC4-227ENST00000497984 PRIM1P49642 420 aaKnown RBP11.92□□□□□ -0.5
SMC4-227ENST00000497984 MAP3K7O43318 606 aa11.91□□□□□ -0.5
SMC4-227ENST00000497984 ANKK1Q8NFD2 765 aa11.91□□□□□ -0.5
SMC4-227ENST00000497984 SEPT9Q9UHD8 586 aaPredicted RBP11.9□□□□□ -0.5
SMC4-227ENST00000497984 ZFRQ96KR1 1074 aaKnown RBP11.89□□□□□ -0.51
SMC4-227ENST00000497984 BCAMP50895 628 aa11.88□□□□□ -0.51
SMC4-227ENST00000497984 IFFO2Q5TF58 517 aa11.88□□□□□ -0.51
SMC4-227ENST00000497984 TSKSQ9UJT2 592 aa11.88□□□□□ -0.51
SMC4-227ENST00000497984 SOWAHBA6NEL2 793 aa11.87□□□□□ -0.51
SMC4-227ENST00000497984 GRXCR2A6NFK2 248 aa11.87□□□□□ -0.51
SMC4-227ENST00000497984 FAM98CQ17RN3 349 aaKnown RBP11.85□□□□□ -0.51
SMC4-227ENST00000497984 TSHZ2Q9NRE2 1034 aa11.85□□□□□ -0.51
SMC4-227ENST00000497984 OSBPP22059 807 aa11.84□□□□□ -0.51
SMC4-227ENST00000497984 FAM198AQ9UFP1 575 aa11.83□□□□□ -0.52
SMC4-227ENST00000497984 CDCA7LQ96GN5 454 aa11.82□□□□□ -0.52
SMC4-227ENST00000497984 PACS2Q86VP3 889 aa11.81□□□□□ -0.52
SMC4-227ENST00000497984 CDHR5Q9HBB8 845 aa11.81□□□□□ -0.52
SMC4-227ENST00000497984 PRSS12P56730 875 aa11.8□□□□□ -0.52
SMC4-227ENST00000497984 CERKQ8TCT0 537 aa11.8□□□□□ -0.52
SMC4-227ENST00000497984 WBP1LQ9NX94 342 aa11.8□□□□□ -0.52
SMC4-227ENST00000497984 C3orf80F5H4A9 247 aa11.78□□□□□ -0.52
SMC4-227ENST00000497984 A0A0G2JS52 829 aa11.77□□□□□ -0.53
SMC4-227ENST00000497984 ITGBL1O95965 494 aaPredicted RBP11.77□□□□□ -0.53
SMC4-227ENST00000497984 NYAP1Q6ZVC0 841 aa11.77□□□□□ -0.53
SMC4-227ENST00000497984 IRX2Q9BZI1 471 aaPredicted RBP11.77□□□□□ -0.53
SMC4-227ENST00000497984 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.77□□□□□ -0.53
SMC4-227ENST00000497984 LRCH3Q96II8 777 aa11.76□□□□□ -0.53
SMC4-227ENST00000497984 SMAPO00193 183 aa11.75□□□□□ -0.53
SMC4-227ENST00000497984 KCNV2Q8TDN2 545 aa11.75□□□□□ -0.53
SMC4-227ENST00000497984 ARHGEF1Q92888 912 aaKnown RBP11.74□□□□□ -0.53
SMC4-227ENST00000497984 TSR3Q9UJK0 312 aaKnown RBP11.74□□□□□ -0.53
SMC4-227ENST00000497984 HPS5Q9UPZ3 1129 aa11.74□□□□□ -0.53
SMC4-227ENST00000497984 NPDC1Q9NQX5 325 aaPredicted RBP11.73□□□□□ -0.53
SMC4-227ENST00000497984 RBM27Q9P2N5 1060 aaKnown RBP11.73□□□□□ -0.53
SMC4-227ENST00000497984 TATDN2Q93075 761 aa11.72□□□□□ -0.53
SMC4-227ENST00000497984 TTC13Q8NBP0 860 aa11.71□□□□□ -0.53
SMC4-227ENST00000497984 PNMA3Q9UL41 463 aa11.71□□□□□ -0.53
SMC4-227ENST00000497984 NBPF26B4DH59 902 aa11.7□□□□□ -0.54
SMC4-227ENST00000497984 RGS20O76081 388 aa11.7□□□□□ -0.54
SMC4-227ENST00000497984 MLLT3P42568 568 aaPredicted RBP11.7□□□□□ -0.54
SMC4-227ENST00000497984 SAMD7Q7Z3H4 446 aa11.69□□□□□ -0.54
SMC4-227ENST00000497984 NUDT18Q6ZVK8 323 aa11.67□□□□□ -0.54
SMC4-227ENST00000497984 PADI6Q6TGC4 694 aa11.66□□□□□ -0.54
SMC4-227ENST00000497984 PPP4CP60510 307 aa11.65□□□□□ -0.54
SMC4-227ENST00000497984 KCNC4Q03721 635 aa11.65□□□□□ -0.54
SMC4-227ENST00000497984 PTGDRQ13258 359 aa11.58□□□□□ -0.56
SMC4-227ENST00000497984 TJAP1Q5JTD0 557 aa11.58□□□□□ -0.56
SMC4-227ENST00000497984 P3H3Q8IVL6 736 aa11.58□□□□□ -0.56
SMC4-227ENST00000497984 EYA1Q99502 592 aa11.58□□□□□ -0.56
SMC4-227ENST00000497984 PLCB2Q00722 1185 aa11.56□□□□□ -0.56
SMC4-227ENST00000497984 SWT1Q5T5J6 900 aaKnown RBP11.56□□□□□ -0.56
SMC4-227ENST00000497984 APLP1P51693 650 aa11.54□□□□□ -0.56
SMC4-227ENST00000497984 HDGFP51858 240 aaKnown RBP11.54□□□□□ -0.56
SMC4-227ENST00000497984 SEMA3EO15041 775 aa11.53□□□□□ -0.56
SMC4-227ENST00000497984 RNF40O75150 1001 aa11.53□□□□□ -0.56
SMC4-227ENST00000497984 MTRQ99707 1265 aa11.53□□□□□ -0.56
SMC4-227ENST00000497984 SLF2Q8IX21 1173 aa11.5□□□□□ -0.57
SMC4-227ENST00000497984 IL21Q9HBE4 155 aa11.5□□□□□ -0.57
SMC4-227ENST00000497984 NUTM2FA1L443 756 aa11.49□□□□□ -0.57
SMC4-227ENST00000497984 ZNF516Q92618 1163 aa11.48□□□□□ -0.57
SMC4-227ENST00000497984 ADGRG1Q9Y653 693 aa11.48□□□□□ -0.57
SMC4-227ENST00000497984 Q6ZNB5 142 aa11.47□□□□□ -0.57
SMC4-227ENST00000497984 NECTIN2Q92692 538 aa11.47□□□□□ -0.57
SMC4-227ENST00000497984 DNAJB2P25686 324 aa11.45□□□□□ -0.58
SMC4-227ENST00000497984 TESPA1A2RU30 521 aaPredicted RBP11.44□□□□□ -0.58
SMC4-227ENST00000497984 FCHSD2O94868 740 aa11.44□□□□□ -0.58
SMC4-227ENST00000497984 FAM161AQ3B820 660 aa11.44□□□□□ -0.58
SMC4-227ENST00000497984 RBM46Q8TBY0 533 aaKnown RBP11.44□□□□□ -0.58
SMC4-227ENST00000497984 TMEM134Q9H6X4 195 aa11.44□□□□□ -0.58
SMC4-227ENST00000497984 LCE2BO14633 110 aa11.42□□□□□ -0.58
SMC4-227ENST00000497984 NKX2-3Q8TAU0 364 aa11.42□□□□□ -0.58
SMC4-227ENST00000497984 RCCD1A6NED2 376 aa11.41□□□□□ -0.58
SMC4-227ENST00000497984 SLC4A3P48751 1232 aa11.41□□□□□ -0.58
SMC4-227ENST00000497984 PPP1R18Q6NYC8 613 aa11.41□□□□□ -0.58
SMC4-227ENST00000497984 COPS2P61201 443 aa11.4□□□□□ -0.58
SMC4-227ENST00000497984 RBM26Q5T8P6 1007 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms