RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 PDE4CQ08493 712 aa9.69□□□□□ -0.86
BRCA1-224ENST00000497488 COG6Q9Y2V7 657 aa9.69□□□□□ -0.86
BRCA1-224ENST00000497488 FECHP22830 423 aa9.68□□□□□ -0.86
BRCA1-224ENST00000497488 HIC1Q14526 733 aa9.68□□□□□ -0.86
BRCA1-224ENST00000497488 SKIV2LQ15477 1246 aaKnown RBP9.67□□□□□ -0.86
BRCA1-224ENST00000497488 GPHNQ9NQX3 736 aaPredicted RBP9.67□□□□□ -0.86
BRCA1-224ENST00000497488 SPDYE5A6NIY4 337 aa9.66□□□□□ -0.86
BRCA1-224ENST00000497488 HSP90B1P14625 803 aaKnown RBP9.66□□□□□ -0.86
BRCA1-224ENST00000497488 TMEM106CQ9BVX2 250 aa9.66□□□□□ -0.86
BRCA1-224ENST00000497488 ZNF330Q9Y3S2 320 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-224ENST00000497488 FCHSD2O94868 740 aa9.65□□□□□ -0.86
BRCA1-224ENST00000497488 REPIN1Q9BWE0 567 aaKnown RBP9.65□□□□□ -0.86
BRCA1-224ENST00000497488 ACIN1Q9UKV3 1341 aaKnown RBP9.63□□□□□ -0.87
BRCA1-224ENST00000497488 GRXCR2A6NFK2 248 aa9.63□□□□□ -0.87
BRCA1-224ENST00000497488 KCNA1Q09470 495 aa9.63□□□□□ -0.87
BRCA1-224ENST00000497488 AMOTL2Q9Y2J4 779 aa9.63□□□□□ -0.87
BRCA1-224ENST00000497488 CDK11BP21127 795 aaKnown RBP9.62□□□□□ -0.87
BRCA1-224ENST00000497488 PUS7Q96PZ0 661 aaKnown RBP9.62□□□□□ -0.87
BRCA1-224ENST00000497488 TRIM35Q9UPQ4 493 aa9.62□□□□□ -0.87
BRCA1-224ENST00000497488 CDK11AQ9UQ88 783 aaPredicted RBP9.62□□□□□ -0.87
BRCA1-224ENST00000497488 PROCA1Q8NCQ7 364 aaPredicted RBP9.61□□□□□ -0.87
BRCA1-224ENST00000497488 BRD1O95696 1058 aa9.6□□□□□ -0.87
BRCA1-224ENST00000497488 OSBPP22059 807 aa9.59□□□□□ -0.87
BRCA1-224ENST00000497488 TMUB1Q9BVT8 246 aa9.59□□□□□ -0.87
BRCA1-224ENST00000497488 MYT1Q01538 1121 aa9.58□□□□□ -0.88
BRCA1-224ENST00000497488 DSG2Q14126 1118 aa9.58□□□□□ -0.88
BRCA1-224ENST00000497488 BANK1Q8NDB2 785 aa9.57□□□□□ -0.88
BRCA1-224ENST00000497488 POTEFA5A3E0 1075 aa9.56□□□□□ -0.88
BRCA1-224ENST00000497488 SLC39A7Q92504 469 aa9.56□□□□□ -0.88
BRCA1-224ENST00000497488 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.56□□□□□ -0.88
BRCA1-224ENST00000497488 SNRKQ9NRH2 765 aa9.56□□□□□ -0.88
BRCA1-224ENST00000497488 METRNQ9UJH8 293 aa9.56□□□□□ -0.88
BRCA1-224ENST00000497488 ATP1B4Q9UN42 357 aaPredicted RBP9.56□□□□□ -0.88
BRCA1-224ENST00000497488 CLCN1P35523 988 aa9.55□□□□□ -0.88
BRCA1-224ENST00000497488 CALR3Q96L12 384 aaKnown RBP9.55□□□□□ -0.88
BRCA1-224ENST00000497488 USP35Q9P2H5 1018 aa9.55□□□□□ -0.88
BRCA1-224ENST00000497488 USTQ9Y2C2 406 aa9.55□□□□□ -0.88
BRCA1-224ENST00000497488 C7P10643 843 aa9.54□□□□□ -0.88
BRCA1-224ENST00000497488 CCDC27Q2M243 656 aa9.54□□□□□ -0.88
BRCA1-224ENST00000497488 POLR3EQ9NVU0 708 aa9.54□□□□□ -0.88
BRCA1-224ENST00000497488 PTGDRQ13258 359 aa9.53□□□□□ -0.88
BRCA1-224ENST00000497488 GPCPD1Q9NPB8 672 aa9.53□□□□□ -0.88
BRCA1-224ENST00000497488 COLQQ9Y215 455 aaPredicted RBP9.53□□□□□ -0.88
BRCA1-224ENST00000497488 POTEB2H3BUK9 544 aa9.52□□□□□ -0.89
BRCA1-224ENST00000497488 PBXIP1Q96AQ6 731 aa9.52□□□□□ -0.89
BRCA1-224ENST00000497488 SSTR3P32745 418 aaPredicted RBP9.51□□□□□ -0.89
BRCA1-224ENST00000497488 IER5LQ5T953 404 aa9.51□□□□□ -0.89
BRCA1-224ENST00000497488 WWC1Q8IX03 1113 aa9.51□□□□□ -0.89
BRCA1-224ENST00000497488 GLMNQ92990 594 aa9.51□□□□□ -0.89
BRCA1-224ENST00000497488 BEGAINQ9BUH8 593 aa9.51□□□□□ -0.89
BRCA1-224ENST00000497488 RFC5P40937 340 aa9.5□□□□□ -0.89
BRCA1-224ENST00000497488 FOXK1P85037 733 aa9.5□□□□□ -0.89
BRCA1-224ENST00000497488 MDM2Q00987 491 aaPredicted RBP9.5□□□□□ -0.89
BRCA1-224ENST00000497488 GDPD2Q9HCC8 539 aa9.5□□□□□ -0.89
BRCA1-224ENST00000497488 TTBK1Q5TCY1 1321 aaPredicted RBP9.5□□□□□ -0.89
BRCA1-224ENST00000497488 TBC1D12O60347 775 aa9.49□□□□□ -0.89
BRCA1-224ENST00000497488 IRX5P78411 483 aaPredicted RBP9.49□□□□□ -0.89
BRCA1-224ENST00000497488 GOLGA2Q08379 1002 aa9.49□□□□□ -0.89
BRCA1-224ENST00000497488 RSPH4AQ5TD94 716 aa9.49□□□□□ -0.89
BRCA1-224ENST00000497488 SND1Q7KZF4 910 aaKnown RBP eCLIP9.49□□□□□ -0.89
BRCA1-224ENST00000497488 PTGER2P43116 358 aa9.48□□□□□ -0.89
BRCA1-224ENST00000497488 MYSM1Q5VVJ2 828 aa9.48□□□□□ -0.89
BRCA1-224ENST00000497488 POM121CA8CG34 1229 aa9.47□□□□□ -0.89
BRCA1-224ENST00000497488 POTEJP0CG39 1038 aa9.47□□□□□ -0.89
BRCA1-224ENST00000497488 CSB-PGBD3P0DP91 1061 aa9.47□□□□□ -0.89
BRCA1-224ENST00000497488 MAP3K9P80192 1104 aa9.47□□□□□ -0.89
BRCA1-224ENST00000497488 TMEM259Q4ZIN3 620 aa9.47□□□□□ -0.89
BRCA1-224ENST00000497488 IVNS1ABPQ9Y6Y0 642 aa9.47□□□□□ -0.89
BRCA1-224ENST00000497488 PRIM1P49642 420 aaKnown RBP9.46□□□□□ -0.9
BRCA1-224ENST00000497488 CLK2P49760 499 aaKnown RBP9.46□□□□□ -0.9
BRCA1-224ENST00000497488 LHX8Q68G74 356 aa9.46□□□□□ -0.9
BRCA1-224ENST00000497488 MTMR14Q8NCE2 650 aa9.46□□□□□ -0.9
BRCA1-224ENST00000497488 NISCHQ9Y2I1 1504 aa9.46□□□□□ -0.9
BRCA1-224ENST00000497488 ILDR1Q86SU0 546 aaPredicted RBP9.45□□□□□ -0.9
BRCA1-224ENST00000497488 SEC24BO95487 1268 aa9.44□□□□□ -0.9
BRCA1-224ENST00000497488 PLPP6Q8IY26 295 aa9.44□□□□□ -0.9
BRCA1-224ENST00000497488 PDCD7Q8N8D1 485 aaKnown RBP9.44□□□□□ -0.9
BRCA1-224ENST00000497488 TMC2Q8TDI7 906 aa9.44□□□□□ -0.9
BRCA1-224ENST00000497488 DDX12PQ92771 950 aa9.44□□□□□ -0.9
BRCA1-224ENST00000497488 PHOX2BQ99453 314 aa9.44□□□□□ -0.9
BRCA1-224ENST00000497488 FAM217BQ9NTX9 383 aaPredicted RBP9.44□□□□□ -0.9
BRCA1-224ENST00000497488 MYT1LQ9UL68 1186 aa9.44□□□□□ -0.9
BRCA1-224ENST00000497488 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.43□□□□□ -0.9
BRCA1-224ENST00000497488 UNCXA6NJT0 531 aa9.43□□□□□ -0.9
BRCA1-224ENST00000497488 EIF5BO60841 1220 aaKnown RBP9.43□□□□□ -0.9
BRCA1-224ENST00000497488 ABL2P42684 1182 aa9.43□□□□□ -0.9
BRCA1-224ENST00000497488 OCEL1Q9H607 264 aa9.43□□□□□ -0.9
BRCA1-224ENST00000497488 IGSF5Q9NSI5 407 aa9.43□□□□□ -0.9
BRCA1-224ENST00000497488 PLCG2P16885 1265 aa9.42□□□□□ -0.9
BRCA1-224ENST00000497488 SRPK2P78362 688 aaKnown RBP9.42□□□□□ -0.9
BRCA1-224ENST00000497488 FBXO31Q5XUX0 539 aaPredicted RBP9.42□□□□□ -0.9
BRCA1-224ENST00000497488 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.42□□□□□ -0.94e-6■■■■■ 27.4
BRCA1-224ENST00000497488 SOCS7O14512 581 aa9.41□□□□□ -0.9
BRCA1-224ENST00000497488 PPP2R2DQ66LE6 453 aa9.41□□□□□ -0.9
BRCA1-224ENST00000497488 CARNS1A5YM72 827 aa9.39□□□□□ -0.91
BRCA1-224ENST00000497488 RFX1P22670 979 aa9.39□□□□□ -0.91
BRCA1-224ENST00000497488 CFAP70Q5T0N1 1121 aa9.39□□□□□ -0.91
BRCA1-224ENST00000497488 DPY19L2Q6NUT2 758 aa9.39□□□□□ -0.91
BRCA1-224ENST00000497488 PRM3Q9NNZ6 103 aa9.39□□□□□ -0.91
BRCA1-224ENST00000497488 FAM177A1Q8N128 213 aaPredicted RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms