RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 GGT6Q6P531 493 aa24.59■■□□□ 1.53
HDAC4-213ENST00000496347 ZC3H13Q5T200 1668 aaKnown RBP24.59■■□□□ 1.53
HDAC4-213ENST00000496347 STRCQ7RTU9 1775 aa24.58■■□□□ 1.53
HDAC4-213ENST00000496347 PTPRKQ15262 1439 aa24.58■■□□□ 1.53
HDAC4-213ENST00000496347 DUOX2Q9NRD8 1548 aa24.56■■□□□ 1.52
HDAC4-213ENST00000496347 KIF3BO15066 747 aa24.54■■□□□ 1.52
HDAC4-213ENST00000496347 CEP170BQ9Y4F5 1589 aaPredicted RBP24.54■■□□□ 1.52
HDAC4-213ENST00000496347 ABCC5O15440 1437 aa24.53■■□□□ 1.52
HDAC4-213ENST00000496347 DAPK1P53355 1430 aa24.53■■□□□ 1.52
HDAC4-213ENST00000496347 PZPP20742 1482 aa24.53■■□□□ 1.52
HDAC4-213ENST00000496347 MROH1Q8NDA8 1641 aa24.52■■□□□ 1.52
HDAC4-213ENST00000496347 NCOA1Q15788 1441 aa24.5■■□□□ 1.51
HDAC4-213ENST00000496347 ERBINQ96RT1 1412 aa24.5■■□□□ 1.51
HDAC4-213ENST00000496347 KIF15Q9NS87 1388 aa24.49■■□□□ 1.51
HDAC4-213ENST00000496347 ABCC3O15438 1527 aa24.49■■□□□ 1.51
HDAC4-213ENST00000496347 PRDM15P57071 1507 aaPredicted RBP24.48■■□□□ 1.51
HDAC4-213ENST00000496347 CAMSAP1Q5T5Y3 1602 aa24.47■■□□□ 1.51
HDAC4-213ENST00000496347 DEPDC5O75140 1603 aa24.46■■□□□ 1.51
HDAC4-213ENST00000496347 PLA2R1Q13018 1463 aa24.45■■□□□ 1.51
HDAC4-213ENST00000496347 WASHC2CQ9Y4E1 1318 aa24.44■■□□□ 1.5
HDAC4-213ENST00000496347 DMRT2Q9Y5R5 561 aa24.44■■□□□ 1.5
HDAC4-213ENST00000496347 CEP152O94986 1710 aa24.44■■□□□ 1.5
HDAC4-213ENST00000496347 PTPRTO14522 1441 aa24.44■■□□□ 1.5
HDAC4-213ENST00000496347 ILDR1Q86SU0 546 aaPredicted RBP24.43■■□□□ 1.5
HDAC4-213ENST00000496347 A2ML1A8K2U0 1454 aa24.43■■□□□ 1.5
HDAC4-213ENST00000496347 ADGRL2O95490 1459 aa24.42■■□□□ 1.5
HDAC4-213ENST00000496347 TNRQ92752 1358 aa24.41■■□□□ 1.5
HDAC4-213ENST00000496347 ANKRD30AQ9BXX3 1397 aa24.41■■□□□ 1.5
HDAC4-213ENST00000496347 SPATA31D1Q6ZQQ2 1576 aa24.39■■□□□ 1.5
HDAC4-213ENST00000496347 NLRP1Q9C000 1473 aa24.38■■□□□ 1.49
HDAC4-213ENST00000496347 POLR1AO95602 1720 aaPredicted RBP24.35■■□□□ 1.49
HDAC4-213ENST00000496347 ERVK-7P63135 1459 aa24.34■■□□□ 1.49
HDAC4-213ENST00000496347 FBXO41Q8TF61 875 aa24.33■■□□□ 1.49
HDAC4-213ENST00000496347 RRP7BPQ9NSQ0 103 aa24.33■■□□□ 1.49
HDAC4-213ENST00000496347 VWDEQ8N2E2 1590 aa24.31■■□□□ 1.48
HDAC4-213ENST00000496347 ARHGAP31Q2M1Z3 1444 aa24.3■■□□□ 1.48
HDAC4-213ENST00000496347 FAM50AQ14320 339 aaKnown RBP24.3■■□□□ 1.48
HDAC4-213ENST00000496347 FBXO31Q5XUX0 539 aaPredicted RBP24.3■■□□□ 1.48
HDAC4-213ENST00000496347 LMTK2Q8IWU2 1503 aa24.3■■□□□ 1.48
HDAC4-213ENST00000496347 PKD2Q13563 968 aa24.29■■□□□ 1.48
HDAC4-213ENST00000496347 UGGT1Q9NYU2 1555 aa24.29■■□□□ 1.48
HDAC4-213ENST00000496347 KANK1Q14678 1352 aa24.28■■□□□ 1.48
HDAC4-213ENST00000496347 NEURL4Q96JN8 1562 aa24.25■■□□□ 1.47
HDAC4-213ENST00000496347 CERKQ8TCT0 537 aa24.25■■□□□ 1.47
HDAC4-213ENST00000496347 CHIC2Q9UKJ5 165 aa24.25■■□□□ 1.47
HDAC4-213ENST00000496347 EFCAB6Q5THR3 1501 aa24.25■■□□□ 1.47
HDAC4-213ENST00000496347 LTBP4Q8N2S1 1624 aa24.24■■□□□ 1.47
HDAC4-213ENST00000496347 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.24■■□□□ 1.47
HDAC4-213ENST00000496347 ANKRD50Q9ULJ7 1429 aa24.24■■□□□ 1.47
HDAC4-213ENST00000496347 CFAP65Q6ZU64 1925 aaKnown RBP24.23■■□□□ 1.47
HDAC4-213ENST00000496347 ROCK1Q13464 1354 aa24.22■■□□□ 1.47
HDAC4-213ENST00000496347 UBR1Q8IWV7 1749 aa24.21■■□□□ 1.47
HDAC4-213ENST00000496347 UNC13BO14795 1591 aa24.21■■□□□ 1.47
HDAC4-213ENST00000496347 IQSEC2Q5JU85 1478 aa24.21■■□□□ 1.47
HDAC4-213ENST00000496347 NCKAP5LQ9HCH0 1330 aa24.21■■□□□ 1.47
HDAC4-213ENST00000496347 KDM5AP29375 1690 aaKnown RBP24.18■■□□□ 1.46
HDAC4-213ENST00000496347 TET3O43151 1660 aa24.17■■□□□ 1.46
HDAC4-213ENST00000496347 THEMISQ8N1K5 641 aaPredicted RBP24.16■■□□□ 1.46
HDAC4-213ENST00000496347 IQGAP1P46940 1657 aa24.15■■□□□ 1.46
HDAC4-213ENST00000496347 GCC2Q8IWJ2 1684 aa24.15■■□□□ 1.46
HDAC4-213ENST00000496347 MED14O60244 1454 aa24.15■■□□□ 1.46
HDAC4-213ENST00000496347 RPRD2Q5VT52 1461 aaKnown RBP24.15■■□□□ 1.46
HDAC4-213ENST00000496347 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.15■■□□□ 1.469e-7■■□□□ 12.4
HDAC4-213ENST00000496347 PIK3C2BO00750 1634 aa24.13■■□□□ 1.45
HDAC4-213ENST00000496347 SYNMO15061 1565 aa24.12■■□□□ 1.45
HDAC4-213ENST00000496347 RRBP1Q9P2E9 1410 aaKnown RBP24.12■■□□□ 1.45
HDAC4-213ENST00000496347 SLIT1O75093 1534 aa24.11■■□□□ 1.45
HDAC4-213ENST00000496347 IQGAP3Q86VI3 1631 aa24.1■■□□□ 1.45
HDAC4-213ENST00000496347 ANKLE2Q86XL3 938 aa24.1■■□□□ 1.45
HDAC4-213ENST00000496347 NPHP4O75161 1426 aaPredicted RBP24.1■■□□□ 1.45
HDAC4-213ENST00000496347 NOS1P29475 1434 aa24.1■■□□□ 1.45
HDAC4-213ENST00000496347 ZNF335Q9H4Z2 1342 aaPredicted RBP24.09■■□□□ 1.45
HDAC4-213ENST00000496347 ARHGAP23Q9P227 1491 aa24.08■■□□□ 1.45
HDAC4-213ENST00000496347 SCAF11Q99590 1463 aaKnown RBP24.07■■□□□ 1.44
HDAC4-213ENST00000496347 CPS1P31327 1500 aa24.07■■□□□ 1.44
HDAC4-213ENST00000496347 ADGRB3O60242 1522 aa24.06■■□□□ 1.44
HDAC4-213ENST00000496347 PPARGC1BQ86YN6 1023 aaKnown RBP24.05■■□□□ 1.44
HDAC4-213ENST00000496347 E9PCH4 1651 aa24.02■■□□□ 1.44
HDAC4-213ENST00000496347 TMEM2Q9UHN6 1383 aa23.98■■□□□ 1.43
HDAC4-213ENST00000496347 ITGAEP38570 1179 aa23.97■■□□□ 1.43
HDAC4-213ENST00000496347 SLC52A1Q9NWF4 448 aa23.95■■□□□ 1.42
HDAC4-213ENST00000496347 MYO5BQ9ULV0 1848 aa23.94■■□□□ 1.42
HDAC4-213ENST00000496347 IDI1Q13907 227 aa23.93■■□□□ 1.42
HDAC4-213ENST00000496347 STAG3Q9UJ98 1225 aa23.93■■□□□ 1.42
HDAC4-213ENST00000496347 STRCP1A6NGW2 1772 aa23.93■■□□□ 1.42
HDAC4-213ENST00000496347 EID1Q9Y6B2 187 aa23.92■■□□□ 1.42
HDAC4-213ENST00000496347 TMEM131LA2VDJ0 1609 aa23.92■■□□□ 1.42
HDAC4-213ENST00000496347 NUP155O75694 1391 aa23.91■■□□□ 1.42
HDAC4-213ENST00000496347 NAIPQ13075 1403 aa23.9■■□□□ 1.42
HDAC4-213ENST00000496347 SPHKAPQ2M3C7 1700 aa23.9■■□□□ 1.42
HDAC4-213ENST00000496347 LTKP29376 864 aa23.89■■□□□ 1.41
HDAC4-213ENST00000496347 TXNDC2Q86VQ3 553 aa23.89■■□□□ 1.41
HDAC4-213ENST00000496347 HFM1A2PYH4 1435 aa23.89■■□□□ 1.41
HDAC4-213ENST00000496347 ZFYVE9O95405 1425 aa23.85■■□□□ 1.41
HDAC4-213ENST00000496347 LRRC7Q96NW7 1537 aa23.83■■□□□ 1.41
HDAC4-213ENST00000496347 UBAP1LF5GYI3 381 aa23.82■■□□□ 1.4
HDAC4-213ENST00000496347 NWD1Q149M9 1564 aa23.8■■□□□ 1.4
HDAC4-213ENST00000496347 RIMS2Q9UQ26 1411 aa23.79■■□□□ 1.4
HDAC4-213ENST00000496347 TRPM2O94759 1503 aa23.79■■□□□ 1.4
HDAC4-213ENST00000496347 PLEKHG1Q9ULL1 1385 aa23.78■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms