RNA–Protein interactions for RNA: ENST00000495517.5

RBM41-208, Transcript of RNA binding motif protein 41, human

TSL 2

Gene RBM41, Length 3,315 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM41-208	ENST00000495517	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.49	□□□□□ -0.73
RBM41-208	ENST00000495517	FBLN2	P98095	1184 aa		10.49	□□□□□ -0.73
RBM41-208	ENST00000495517	PCGF6	Q9BYE7	350 aa		10.49	□□□□□ -0.73
RBM41-208	ENST00000495517	PIK3C2B	O00750	1634 aa		10.49	□□□□□ -0.73
RBM41-208	ENST00000495517	POLR1A	O95602	1720 aa	Predicted RBP	10.48	□□□□□ -0.73
RBM41-208	ENST00000495517	KIAA1210	Q9ULL0	1709 aa		10.48	□□□□□ -0.73
RBM41-208	ENST00000495517	SPHKAP	Q2M3C7	1700 aa		10.47	□□□□□ -0.73
RBM41-208	ENST00000495517	RPRD2	Q5VT52	1461 aa	Known RBP	10.47	□□□□□ -0.73
RBM41-208	ENST00000495517	PZP	P20742	1482 aa		10.45	□□□□□ -0.74
RBM41-208	ENST00000495517	ADGRL1	O94910	1474 aa		10.44	□□□□□ -0.74
RBM41-208	ENST00000495517	ANKRD30A	Q9BXX3	1397 aa		10.44	□□□□□ -0.74
RBM41-208	ENST00000495517		E9PCH4	1651 aa		10.44	□□□□□ -0.74
RBM41-208	ENST00000495517	P3H3	Q8IVL6	736 aa		10.43	□□□□□ -0.74
RBM41-208	ENST00000495517	CD109	Q6YHK3	1445 aa		10.43	□□□□□ -0.74
RBM41-208	ENST00000495517	DHX57	Q6P158	1386 aa	Known RBP	10.43	□□□□□ -0.74
RBM41-208	ENST00000495517	CAMSAP1	Q5T5Y3	1602 aa		10.43	□□□□□ -0.74
RBM41-208	ENST00000495517	TRPM2	O94759	1503 aa		10.43	□□□□□ -0.74
RBM41-208	ENST00000495517	EFCAB6	Q5THR3	1501 aa		10.43	□□□□□ -0.74
RBM41-208	ENST00000495517	ARHGAP31	Q2M1Z3	1444 aa		10.42	□□□□□ -0.74
RBM41-208	ENST00000495517	ZEB1	P37275	1124 aa	Predicted RBP	10.41	□□□□□ -0.74
RBM41-208	ENST00000495517	RAB3GAP2	Q9H2M9	1393 aa		10.4	□□□□□ -0.74
RBM41-208	ENST00000495517	PTPRT	O14522	1441 aa		10.4	□□□□□ -0.74
RBM41-208	ENST00000495517	EFCAB2	Q5VUJ9	269 aa		10.38	□□□□□ -0.75
RBM41-208	ENST00000495517	TRAPPC8	Q9Y2L5	1435 aa		10.38	□□□□□ -0.75
RBM41-208	ENST00000495517	SIGLEC1	Q9BZZ2	1709 aa		10.38	□□□□□ -0.75
RBM41-208	ENST00000495517	ANKRD50	Q9ULJ7	1429 aa		10.36	□□□□□ -0.75
RBM41-208	ENST00000495517	DHX29	Q7Z478	1369 aa	Known RBP	10.36	□□□□□ -0.75
RBM41-208	ENST00000495517	CFDP1	Q9UEE9	299 aa	Predicted RBP	10.36	□□□□□ -0.75
RBM41-208	ENST00000495517	KDM2A	Q9Y2K7	1162 aa		10.36	□□□□□ -0.75
RBM41-208	ENST00000495517	A2M	P01023	1474 aa		10.35	□□□□□ -0.75
RBM41-208	ENST00000495517	PREX1	Q8TCU6	1659 aa		10.34	□□□□□ -0.75
RBM41-208	ENST00000495517	ABCC3	O15438	1527 aa		10.34	□□□□□ -0.75
RBM41-208	ENST00000495517	KIF1B	O60333	1816 aa		10.34	□□□□□ -0.75
RBM41-208	ENST00000495517	MADD	Q8WXG6	1647 aa		10.34	□□□□□ -0.75
RBM41-208	ENST00000495517	UHRF1BP1	Q6BDS2	1440 aa		10.34	□□□□□ -0.75
RBM41-208	ENST00000495517	SPATA31D1	Q6ZQQ2	1576 aa		10.34	□□□□□ -0.75
RBM41-208	ENST00000495517	ZNF142	P52746	1687 aa	Predicted RBP	10.33	□□□□□ -0.76
RBM41-208	ENST00000495517	UGGT1	Q9NYU2	1555 aa		10.33	□□□□□ -0.76
RBM41-208	ENST00000495517	PPL	O60437	1756 aa		10.33	□□□□□ -0.76
RBM41-208	ENST00000495517	KIF15	Q9NS87	1388 aa		10.32	□□□□□ -0.76
RBM41-208	ENST00000495517	SCAPER	Q9BY12	1400 aa		10.32	□□□□□ -0.76
RBM41-208	ENST00000495517	CNKSR2	Q8WXI2	1034 aa		10.32	□□□□□ -0.76
RBM41-208	ENST00000495517	NRXN1	Q9ULB1	1477 aa		10.32	□□□□□ -0.76
RBM41-208	ENST00000495517	MYO3A	Q8NEV4	1616 aa		10.32	□□□□□ -0.76
RBM41-208	ENST00000495517	NPM1	P06748	294 aa	Known RBP eCLIP	10.31	□□□□□ -0.76
RBM41-208	ENST00000495517	ADGRB3	O60242	1522 aa		10.31	□□□□□ -0.76
RBM41-208	ENST00000495517	ANKRD30B	Q9BXX2	1392 aa		10.3	□□□□□ -0.76
RBM41-208	ENST00000495517	ADAMTSL3	P82987	1691 aa		10.3	□□□□□ -0.76
RBM41-208	ENST00000495517	DNAJC5	Q9H3Z4	198 aa		10.3	□□□□□ -0.76
RBM41-208	ENST00000495517	TRPM1	Q7Z4N2	1603 aa		10.3	□□□□□ -0.76
RBM41-208	ENST00000495517	MYOM2	P54296	1465 aa		10.29	□□□□□ -0.76
RBM41-208	ENST00000495517	SETBP1	Q9Y6X0	1596 aa		10.29	□□□□□ -0.76
RBM41-208	ENST00000495517	TSPOAP1	O95153	1857 aa		10.29	□□□□□ -0.76
RBM41-208	ENST00000495517	CLTCL1	P53675	1640 aa		10.28	□□□□□ -0.76
RBM41-208	ENST00000495517	NOS1	P29475	1434 aa		10.28	□□□□□ -0.76
RBM41-208	ENST00000495517	CNTLN	Q9NXG0	1405 aa		10.27	□□□□□ -0.77
RBM41-208	ENST00000495517	IQGAP1	P46940	1657 aa		10.27	□□□□□ -0.77
RBM41-208	ENST00000495517	SETD1A	O15047	1707 aa	Known RBP	10.27	□□□□□ -0.77
RBM41-208	ENST00000495517	STAC3	Q96MF2	364 aa		10.27	□□□□□ -0.77
RBM41-208	ENST00000495517	SYNM	O15061	1565 aa		10.26	□□□□□ -0.77
RBM41-208	ENST00000495517	PRAG1	Q86YV5	1406 aa		10.26	□□□□□ -0.77
RBM41-208	ENST00000495517	KNDC1	Q76NI1	1749 aa		10.25	□□□□□ -0.77
RBM41-208	ENST00000495517	PLA2R1	Q13018	1463 aa		10.25	□□□□□ -0.77
RBM41-208	ENST00000495517	TMEM131L	A2VDJ0	1609 aa		10.24	□□□□□ -0.77
RBM41-208	ENST00000495517	ZFYVE9	O95405	1425 aa		10.24	□□□□□ -0.77
RBM41-208	ENST00000495517	FER1L4	A9Z1Z3	1794 aa		10.24	□□□□□ -0.77
RBM41-208	ENST00000495517	ZNF644	Q9H582	1327 aa	Predicted RBP	10.24	□□□□□ -0.77
RBM41-208	ENST00000495517	MAPK8IP2	Q13387	824 aa	Predicted RBP	10.23	□□□□□ -0.77
RBM41-208	ENST00000495517	CLTC	Q00610	1675 aa	Known RBP	10.23	□□□□□ -0.77
RBM41-208	ENST00000495517	SPATA31E1	Q6ZUB1	1445 aa		10.23	□□□□□ -0.77
RBM41-208	ENST00000495517	RANGAP1	P46060	587 aa	Predicted RBP	10.22	□□□□□ -0.77
RBM41-208	ENST00000495517	C3	P01024	1663 aa		10.21	□□□□□ -0.77
RBM41-208	ENST00000495517	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.21	□□□□□ -0.77
RBM41-208	ENST00000495517	TSPY4	P0CV99	314 aa		10.21	□□□□□ -0.78
RBM41-208	ENST00000495517	TSPY10	P0CW01	314 aa		10.21	□□□□□ -0.78
RBM41-208	ENST00000495517	SPAG9	O60271	1321 aa	Known RBP	10.2	□□□□□ -0.78
RBM41-208	ENST00000495517	RALGAPB	Q86X10	1494 aa		10.2	□□□□□ -0.78
RBM41-208	ENST00000495517	UBR1	Q8IWV7	1749 aa		10.2	□□□□□ -0.78
RBM41-208	ENST00000495517	RIMS1	Q86UR5	1692 aa	Known RBP	10.2	□□□□□ -0.78
RBM41-208	ENST00000495517	NPAT	Q14207	1427 aa		10.19	□□□□□ -0.78
RBM41-208	ENST00000495517	SLC4A2	P04920	1241 aa		10.19	□□□□□ -0.78
RBM41-208	ENST00000495517	SCAF1	Q9H7N4	1312 aa	Known RBP	10.18	□□□□□ -0.78
RBM41-208	ENST00000495517	GPRASP1	Q5JY77	1395 aa		10.18	□□□□□ -0.78
RBM41-208	ENST00000495517	DIP2A	Q14689	1571 aa		10.18	□□□□□ -0.78
RBM41-208	ENST00000495517	NEXMIF	Q5QGS0	1516 aa		10.17	□□□□□ -0.78
RBM41-208	ENST00000495517	PELP1	Q8IZL8	1130 aa	Known RBP	10.17	□□□□□ -0.78
RBM41-208	ENST00000495517	FAM50A	Q14320	339 aa	Known RBP	10.17	□□□□□ -0.78
RBM41-208	ENST00000495517	GTF3C3	Q9Y5Q9	886 aa		10.17	□□□□□ -0.78
RBM41-208	ENST00000495517	ARX	Q96QS3	562 aa		10.16	□□□□□ -0.78
RBM41-208	ENST00000495517	ERVK-7	P63135	1459 aa		10.15	□□□□□ -0.78
RBM41-208	ENST00000495517	KANK1	Q14678	1352 aa		10.15	□□□□□ -0.78
RBM41-208	ENST00000495517	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.15	□□□□□ -0.78	3e-6	■■■■□ 21.9
RBM41-208	ENST00000495517	YEATS2	Q9ULM3	1422 aa		10.15	□□□□□ -0.79
RBM41-208	ENST00000495517	MYO5B	Q9ULV0	1848 aa		10.15	□□□□□ -0.79
RBM41-208	ENST00000495517	SLIT1	O75093	1534 aa		10.14	□□□□□ -0.79
RBM41-208	ENST00000495517	MPHOSPH9	Q99550	1183 aa		10.14	□□□□□ -0.79
RBM41-208	ENST00000495517	VSIG10	Q8N0Z9	540 aa		10.13	□□□□□ -0.79
RBM41-208	ENST00000495517	ATP1B4	Q9UN42	357 aa	Predicted RBP	10.13	□□□□□ -0.79
RBM41-208	ENST00000495517	NLRP1	Q9C000	1473 aa		10.13	□□□□□ -0.79
RBM41-208	ENST00000495517	NRXN3	Q9Y4C0	1643 aa		10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms