RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 RNF17Q9BXT8 1623 aaKnown RBP28.74■■■□□ 2.19
USP39-218ENST00000493829 MROH1Q8NDA8 1641 aa28.73■■■□□ 2.19
USP39-218ENST00000493829 HRCP23327 699 aa28.7■■■□□ 2.19
USP39-218ENST00000493829 AGLP35573 1532 aa28.7■■■□□ 2.19
USP39-218ENST00000493829 NUP155O75694 1391 aa28.7■■■□□ 2.18
USP39-218ENST00000493829 PRDM15P57071 1507 aaPredicted RBP28.7■■■□□ 2.18
USP39-218ENST00000493829 ARID4BQ4LE39 1312 aaPredicted RBP28.69■■■□□ 2.18
USP39-218ENST00000493829 GGT6Q6P531 493 aa28.69■■■□□ 2.18
USP39-218ENST00000493829 KDM5DQ9BY66 1539 aa28.66■■■□□ 2.18
USP39-218ENST00000493829 PZPP20742 1482 aa28.66■■■□□ 2.18
USP39-218ENST00000493829 IQGAP3Q86VI3 1631 aa28.66■■■□□ 2.18
USP39-218ENST00000493829 MLECQ14165 292 aa28.65■■■□□ 2.18
USP39-218ENST00000493829 FAM135AQ9P2D6 1515 aa28.64■■■□□ 2.18
USP39-218ENST00000493829 DHX57Q6P158 1386 aaKnown RBP28.64■■■□□ 2.18
USP39-218ENST00000493829 CEP152O94986 1710 aa28.63■■■□□ 2.17
USP39-218ENST00000493829 KANK1Q14678 1352 aa28.61■■■□□ 2.17
USP39-218ENST00000493829 VWDEQ8N2E2 1590 aa28.6■■■□□ 2.17
USP39-218ENST00000493829 SLC4A1APQ9BWU0 796 aaKnown RBP28.59■■■□□ 2.17
USP39-218ENST00000493829 CCER1Q8TC90 406 aaPredicted RBP28.58■■■□□ 2.17
USP39-218ENST00000493829 MPHOSPH9Q99550 1183 aa28.58■■■□□ 2.17
USP39-218ENST00000493829 ACIN1Q9UKV3 1341 aaKnown RBP28.57■■■□□ 2.16
USP39-218ENST00000493829 ABCC3O15438 1527 aa28.56■■■□□ 2.16
USP39-218ENST00000493829 FOXD1Q16676 465 aa28.54■■■□□ 2.16
USP39-218ENST00000493829 TET3O43151 1660 aa28.54■■■□□ 2.16
USP39-218ENST00000493829 ZC3H13Q5T200 1668 aaKnown RBP28.54■■■□□ 2.16
USP39-218ENST00000493829 CLTCQ00610 1675 aaKnown RBP28.52■■■□□ 2.16
USP39-218ENST00000493829 WASHC2CQ9Y4E1 1318 aa28.52■■■□□ 2.16
USP39-218ENST00000493829 CAMSAP1Q5T5Y3 1602 aa28.51■■■□□ 2.15
USP39-218ENST00000493829 PKD2Q13563 968 aa28.5■■■□□ 2.15
USP39-218ENST00000493829 EFCAB6Q5THR3 1501 aa28.49■■■□□ 2.15
USP39-218ENST00000493829 E9PCH4 1651 aa28.49■■■□□ 2.15
USP39-218ENST00000493829 LMTK2Q8IWU2 1503 aa28.49■■■□□ 2.15
USP39-218ENST00000493829 FER1L4A9Z1Z3 1794 aa28.47■■■□□ 2.15
USP39-218ENST00000493829 ESF1Q9H501 851 aaKnown RBP28.43■■■□□ 2.14
USP39-218ENST00000493829 MADDQ8WXG6 1647 aa28.41■■■□□ 2.14
USP39-218ENST00000493829 NPATQ14207 1427 aa28.39■■■□□ 2.13
USP39-218ENST00000493829 PPP6R1Q9UPN7 881 aa28.38■■■□□ 2.13
USP39-218ENST00000493829 RIMS1Q86UR5 1692 aaKnown RBP28.37■■■□□ 2.13
USP39-218ENST00000493829 ADAMTSL3P82987 1691 aa28.36■■■□□ 2.13
USP39-218ENST00000493829 SPHKAPQ2M3C7 1700 aa28.36■■■□□ 2.13
USP39-218ENST00000493829 CFAP65Q6ZU64 1925 aaKnown RBP28.34■■■□□ 2.13
USP39-218ENST00000493829 MROH2AA6NES4 1674 aa28.34■■■□□ 2.13
USP39-218ENST00000493829 CNTLNQ9NXG0 1405 aa28.33■■■□□ 2.13
USP39-218ENST00000493829 RPRD2Q5VT52 1461 aaKnown RBP28.32■■■□□ 2.12
USP39-218ENST00000493829 ANKRD30BQ9BXX2 1392 aa28.32■■■□□ 2.12
USP39-218ENST00000493829 PREX1Q8TCU6 1659 aa28.31■■■□□ 2.12
USP39-218ENST00000493829 PLPPR3Q6T4P5 718 aa28.31■■■□□ 2.12
USP39-218ENST00000493829 ARHGAP31Q2M1Z3 1444 aa28.31■■■□□ 2.12
USP39-218ENST00000493829 SIN3AQ96ST3 1273 aa28.29■■■□□ 2.12
USP39-218ENST00000493829 PLA2R1Q13018 1463 aa28.29■■■□□ 2.12
USP39-218ENST00000493829 ZMYM3Q14202 1370 aa28.29■■■□□ 2.12
USP39-218ENST00000493829 C3P01024 1663 aa28.29■■■□□ 2.12
USP39-218ENST00000493829 TRPM2O94759 1503 aa28.28■■■□□ 2.12
USP39-218ENST00000493829 NEUROD1Q13562 356 aa28.27■■■□□ 2.12
USP39-218ENST00000493829 CLSPNQ9HAW4 1339 aa28.27■■■□□ 2.12
USP39-218ENST00000493829 UGGT1Q9NYU2 1555 aa28.27■■■□□ 2.12
USP39-218ENST00000493829 FBXO31Q5XUX0 539 aaPredicted RBP28.26■■■□□ 2.11
USP39-218ENST00000493829 ERVK-7P63135 1459 aa28.25■■■□□ 2.11
USP39-218ENST00000493829 SYNMO15061 1565 aa28.25■■■□□ 2.11
USP39-218ENST00000493829 PTPRTO14522 1441 aa28.24■■■□□ 2.11
USP39-218ENST00000493829 CLTCL1P53675 1640 aa28.24■■■□□ 2.11
USP39-218ENST00000493829 CEBPAP49715 358 aaPredicted RBP28.23■■■□□ 2.11
USP39-218ENST00000493829 CCDC144AA2RUR9 1427 aa28.22■■■□□ 2.11
USP39-218ENST00000493829 NOS1P29475 1434 aa28.21■■■□□ 2.11
USP39-218ENST00000493829 SPATA31D1Q6ZQQ2 1576 aa28.2■■■□□ 2.1
USP39-218ENST00000493829 PIK3C2BO00750 1634 aa28.14■■■□□ 2.09
USP39-218ENST00000493829 PTPRMP28827 1452 aa28.13■■■□□ 2.09
USP39-218ENST00000493829 TNRQ92752 1358 aa28.11■■■□□ 2.09
USP39-218ENST00000493829 KIF1BO60333 1816 aa28.09■■■□□ 2.09
USP39-218ENST00000493829 KDM4FA0A1W2PPD8 638 aa28.09■■■□□ 2.09
USP39-218ENST00000493829 TONSLQ96HA7 1378 aa28.08■■■□□ 2.09
USP39-218ENST00000493829 CHGAP10645 457 aaKnown RBP28.07■■■□□ 2.08
USP39-218ENST00000493829 MYO3AQ8NEV4 1616 aa28.05■■■□□ 2.08
USP39-218ENST00000493829 IDI1Q13907 227 aa28.04■■■□□ 2.08
USP39-218ENST00000493829 ADGRB3O60242 1522 aa28.03■■■□□ 2.08
USP39-218ENST00000493829 RGL3Q3MIN7 710 aa28.03■■■□□ 2.08
USP39-218ENST00000493829 SLC52A1Q9NWF4 448 aa28.02■■■□□ 2.08
USP39-218ENST00000493829 MYO5BQ9ULV0 1848 aa28.01■■■□□ 2.08
USP39-218ENST00000493829 SPATA31E1Q6ZUB1 1445 aa28.01■■■□□ 2.07
USP39-218ENST00000493829 TMEM131LA2VDJ0 1609 aa27.99■■■□□ 2.07
USP39-218ENST00000493829 L3MBTL2Q969R5 705 aa27.97■■■□□ 2.07
USP39-218ENST00000493829 STAG3Q9UJ98 1225 aa27.97■■■□□ 2.07
USP39-218ENST00000493829 NLRP1Q9C000 1473 aa27.96■■■□□ 2.07
USP39-218ENST00000493829 ZNF326Q5BKZ1 582 aaKnown RBP27.95■■■□□ 2.07
USP39-218ENST00000493829 ZEB1P37275 1124 aaPredicted RBP27.94■■■□□ 2.06
USP39-218ENST00000493829 UBR1Q8IWV7 1749 aa27.94■■■□□ 2.06
USP39-218ENST00000493829 NEURL4Q96JN8 1562 aa27.93■■■□□ 2.06
USP39-218ENST00000493829 CEP170BQ9Y4F5 1589 aaPredicted RBP27.92■■■□□ 2.06
USP39-218ENST00000493829 A2ML1A8K2U0 1454 aa27.91■■■□□ 2.06
USP39-218ENST00000493829 ZNF142P52746 1687 aaPredicted RBP27.9■■■□□ 2.06
USP39-218ENST00000493829 DCAF11Q8TEB1 546 aa27.9■■■□□ 2.06
USP39-218ENST00000493829 KDM2AQ9Y2K7 1162 aa27.9■■■□□ 2.06
USP39-218ENST00000493829 IFT172Q9UG01 1749 aa27.89■■■□□ 2.06
USP39-218ENST00000493829 TIMELESSQ9UNS1 1208 aa27.87■■■□□ 2.05
USP39-218ENST00000493829 KDM5AP29375 1690 aaKnown RBP27.87■■■□□ 2.05
USP39-218ENST00000493829 PPLO60437 1756 aa27.87■■■□□ 2.05
USP39-218ENST00000493829 NEXMIFQ5QGS0 1516 aa27.86■■■□□ 2.05
USP39-218ENST00000493829 UHRF1BP1Q6BDS2 1440 aa27.86■■■□□ 2.05
USP39-218ENST00000493829 NUTM2DQ5VT03 806 aaPredicted RBP27.84■■■□□ 2.05
USP39-218ENST00000493829 SETD1BQ9UPS6 1966 aaKnown RBP27.82■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms