RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 ABCA6Q8N139 1617 aa19.4■□□□□ 0.7
UPF3A-210ENST00000493727 KLHL34Q8N239 644 aa19.39■□□□□ 0.69
UPF3A-210ENST00000493727 CLIP1P30622 1438 aa19.38■□□□□ 0.69
UPF3A-210ENST00000493727 POTEHQ6S545 545 aa19.38■□□□□ 0.69
UPF3A-210ENST00000493727 PREX2Q70Z35 1606 aa19.36■□□□□ 0.69
UPF3A-210ENST00000493727 CEBPAP49715 358 aaPredicted RBP19.36■□□□□ 0.69
UPF3A-210ENST00000493727 C3P01024 1663 aa19.36■□□□□ 0.69
UPF3A-210ENST00000493727 MLH3Q9UHC1 1453 aa19.35■□□□□ 0.69
UPF3A-210ENST00000493727 ABCC1P33527 1531 aa19.35■□□□□ 0.69
UPF3A-210ENST00000493727 UHRF1BP1Q6BDS2 1440 aa19.34■□□□□ 0.69
UPF3A-210ENST00000493727 AFAP1Q8N556 730 aa19.34■□□□□ 0.69
UPF3A-210ENST00000493727 AGLP35573 1532 aa19.34■□□□□ 0.69
UPF3A-210ENST00000493727 CCDC18Q5T9S5 1454 aa19.34■□□□□ 0.69
UPF3A-210ENST00000493727 ITSN2Q9NZM3 1697 aa19.33■□□□□ 0.69
UPF3A-210ENST00000493727 CASKIN1Q8WXD9 1431 aa19.31■□□□□ 0.68
UPF3A-210ENST00000493727 KIDINS220Q9ULH0 1771 aa19.3■□□□□ 0.68
UPF3A-210ENST00000493727 TRAPPC8Q9Y2L5 1435 aa19.3■□□□□ 0.68
UPF3A-210ENST00000493727 CDC42BPAQ5VT25 1732 aa19.28■□□□□ 0.68
UPF3A-210ENST00000493727 PTPRTO14522 1441 aa19.27■□□□□ 0.68
UPF3A-210ENST00000493727 SPOCK2Q92563 424 aa19.27■□□□□ 0.68
UPF3A-210ENST00000493727 NUBP1P53384 320 aa19.26■□□□□ 0.67
UPF3A-210ENST00000493727 FYCO1Q9BQS8 1478 aa19.26■□□□□ 0.67
UPF3A-210ENST00000493727 LTBP4Q8N2S1 1624 aa19.25■□□□□ 0.67
UPF3A-210ENST00000493727 CEP162Q5TB80 1403 aa19.24■□□□□ 0.67
UPF3A-210ENST00000493727 MROH2AA6NES4 1674 aa19.23■□□□□ 0.67
UPF3A-210ENST00000493727 NCOA1Q15788 1441 aa19.21■□□□□ 0.67
UPF3A-210ENST00000493727 SAMD9LQ8IVG5 1584 aa19.21■□□□□ 0.67
UPF3A-210ENST00000493727 CNTLNQ9NXG0 1405 aa19.21■□□□□ 0.67
UPF3A-210ENST00000493727 MYT1LQ9UL68 1186 aa19.19■□□□□ 0.66
UPF3A-210ENST00000493727 IQSEC2Q5JU85 1478 aa19.18■□□□□ 0.66
UPF3A-210ENST00000493727 SYCP2Q9BX26 1530 aa19.17■□□□□ 0.66
UPF3A-210ENST00000493727 ILDR2Q71H61 639 aa19.17■□□□□ 0.66
UPF3A-210ENST00000493727 DISP3Q9P2K9 1392 aa19.17■□□□□ 0.66
UPF3A-210ENST00000493727 NPATQ14207 1427 aa19.17■□□□□ 0.66
UPF3A-210ENST00000493727 PLXNC1O60486 1568 aa19.16■□□□□ 0.66
UPF3A-210ENST00000493727 SPATA31D1Q6ZQQ2 1576 aa19.16■□□□□ 0.66
UPF3A-210ENST00000493727 RASEFQ8IZ41 740 aa19.16■□□□□ 0.66
UPF3A-210ENST00000493727 CAMSAP1Q5T5Y3 1602 aa19.14■□□□□ 0.66
UPF3A-210ENST00000493727 ZNF142P52746 1687 aaPredicted RBP19.14■□□□□ 0.66
UPF3A-210ENST00000493727 C19orf67A6NJJ6 358 aa19.14■□□□□ 0.65
UPF3A-210ENST00000493727 INO80Q9ULG1 1556 aaPredicted RBP19.14■□□□□ 0.65
UPF3A-210ENST00000493727 GPATCH8Q9UKJ3 1502 aaKnown RBP19.13■□□□□ 0.65
UPF3A-210ENST00000493727 SUPT6HQ7KZ85 1726 aaKnown RBP19.13■□□□□ 0.65
UPF3A-210ENST00000493727 ATP7AQ04656 1500 aa19.12■□□□□ 0.65
UPF3A-210ENST00000493727 ESF1Q9H501 851 aaKnown RBP19.12■□□□□ 0.65
UPF3A-210ENST00000493727 MYO3AQ8NEV4 1616 aa19.11■□□□□ 0.65
UPF3A-210ENST00000493727 CLTCQ00610 1675 aaKnown RBP19.11■□□□□ 0.65
UPF3A-210ENST00000493727 ZMYM3Q14202 1370 aa19.09■□□□□ 0.65
UPF3A-210ENST00000493727 KIAA1107Q9UPP5 1409 aa19.08■□□□□ 0.65
UPF3A-210ENST00000493727 SOCS7O14512 581 aa19.08■□□□□ 0.64
UPF3A-210ENST00000493727 PLA2R1Q13018 1463 aa19.07■□□□□ 0.64
UPF3A-210ENST00000493727 MTUS2Q5JR59 1369 aa19.06■□□□□ 0.64
UPF3A-210ENST00000493727 CEP170BQ9Y4F5 1589 aaPredicted RBP19.06■□□□□ 0.64
UPF3A-210ENST00000493727 PLEKHH2Q8IVE3 1493 aa19.06■□□□□ 0.64
UPF3A-210ENST00000493727 HAX1O00165 279 aa19.06■□□□□ 0.64
UPF3A-210ENST00000493727 CD44P16070 742 aaKnown RBP19.06■□□□□ 0.64
UPF3A-210ENST00000493727 SPAG9O60271 1321 aaKnown RBP19.05■□□□□ 0.64
UPF3A-210ENST00000493727 A2MP01023 1474 aa19.05■□□□□ 0.64
UPF3A-210ENST00000493727 TCOF1Q13428 1488 aaKnown RBP19.05■□□□□ 0.64
UPF3A-210ENST00000493727 PTPRKQ15262 1439 aa19.05■□□□□ 0.64
UPF3A-210ENST00000493727 ZNF777Q9ULD5 760 aaPredicted RBP19.04■□□□□ 0.64
UPF3A-210ENST00000493727 CCNB3Q8WWL7 1395 aa19.04■□□□□ 0.64
UPF3A-210ENST00000493727 ADGBQ8N7X0 1667 aa19.03■□□□□ 0.64
UPF3A-210ENST00000493727 HNRNPMP52272 730 aaKnown RBP eCLIP19.02■□□□□ 0.643e-6■■■■□ 21.2
UPF3A-210ENST00000493727 FAM212AQ96EL1 285 aa19.02■□□□□ 0.64
UPF3A-210ENST00000493727 CFDP1Q9UEE9 299 aaPredicted RBP19.02■□□□□ 0.64
UPF3A-210ENST00000493727 EHBP1L1Q8N3D4 1523 aa19.01■□□□□ 0.63
UPF3A-210ENST00000493727 TSPYL2Q9H2G4 693 aaPredicted RBP19.01■□□□□ 0.63
UPF3A-210ENST00000493727 ZNF335Q9H4Z2 1342 aaPredicted RBP19■□□□□ 0.63
UPF3A-210ENST00000493727 EVX2Q03828 476 aa19■□□□□ 0.63
UPF3A-210ENST00000493727 NCKAP5LQ9HCH0 1330 aa19■□□□□ 0.63
UPF3A-210ENST00000493727 TIAM1Q13009 1591 aa18.98■□□□□ 0.63
UPF3A-210ENST00000493727 DCAF8Q5TAQ9 597 aa18.98■□□□□ 0.63
UPF3A-210ENST00000493727 GSE1Q14687 1217 aa18.97■□□□□ 0.63
UPF3A-210ENST00000493727 VPS8Q8N3P4 1428 aa18.97■□□□□ 0.63
UPF3A-210ENST00000493727 MBD5Q9P267 1494 aa18.97■□□□□ 0.63
UPF3A-210ENST00000493727 PAK3O75914 559 aaPredicted RBP18.96■□□□□ 0.63
UPF3A-210ENST00000493727 PKD2Q13563 968 aa18.96■□□□□ 0.63
UPF3A-210ENST00000493727 DNMT1P26358 1616 aaKnown RBP18.96■□□□□ 0.63
UPF3A-210ENST00000493727 ZRANB1Q9UGI0 708 aa18.95■□□□□ 0.62
UPF3A-210ENST00000493727 CIZ1Q9ULV3 898 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-210ENST00000493727 CCDC61Q9Y6R9 512 aa18.94■□□□□ 0.62
UPF3A-210ENST00000493727 A2ML1A8K2U0 1454 aa18.94■□□□□ 0.62
UPF3A-210ENST00000493727 POLR1AO95602 1720 aaPredicted RBP18.94■□□□□ 0.62
UPF3A-210ENST00000493727 GGT6Q6P531 493 aa18.92■□□□□ 0.62
UPF3A-210ENST00000493727 NEURL4Q96JN8 1562 aa18.92■□□□□ 0.62
UPF3A-210ENST00000493727 RTEL1-TNFRSF6BF6WH68 1400 aa18.91■□□□□ 0.62
UPF3A-210ENST00000493727 FAM135AQ9P2D6 1515 aa18.9■□□□□ 0.62
UPF3A-210ENST00000493727 ZNF644Q9H582 1327 aaPredicted RBP18.9■□□□□ 0.62
UPF3A-210ENST00000493727 UBAP1LF5GYI3 381 aa18.89■□□□□ 0.61
UPF3A-210ENST00000493727 PZPP20742 1482 aa18.87■□□□□ 0.61
UPF3A-210ENST00000493727 AMER1Q5JTC6 1135 aaPredicted RBP18.87■□□□□ 0.61
UPF3A-210ENST00000493727 DHX29Q7Z478 1369 aaKnown RBP18.87■□□□□ 0.61
UPF3A-210ENST00000493727 KDM5DQ9BY66 1539 aa18.87■□□□□ 0.61
UPF3A-210ENST00000493727 ZNF579Q8NAF0 562 aaKnown RBP18.85■□□□□ 0.61
UPF3A-210ENST00000493727 RTN4Q9NQC3 1192 aaKnown RBP18.85■□□□□ 0.61
UPF3A-210ENST00000493727 CPS1P31327 1500 aa18.84■□□□□ 0.61
UPF3A-210ENST00000493727 NCOA2Q15596 1464 aa18.84■□□□□ 0.61
UPF3A-210ENST00000493727 RSPH4AQ5TD94 716 aa18.84■□□□□ 0.61
UPF3A-210ENST00000493727 CCDC141Q6ZP82 1450 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms