RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 CLTCQ00610 1675 aaKnown RBP17.86■□□□□ 0.45
CTSA-209ENST00000493522 GGT6Q6P531 493 aa17.85■□□□□ 0.45
CTSA-209ENST00000493522 MYO3AQ8NEV4 1616 aa17.84■□□□□ 0.45
CTSA-209ENST00000493522 PPP6R1Q9UPN7 881 aa17.84■□□□□ 0.45
CTSA-209ENST00000493522 ZNF142P52746 1687 aaPredicted RBP17.83■□□□□ 0.45
CTSA-209ENST00000493522 PLA2R1Q13018 1463 aa17.83■□□□□ 0.45
CTSA-209ENST00000493522 PKD2Q13563 968 aa17.83■□□□□ 0.44
CTSA-209ENST00000493522 CEP170BQ9Y4F5 1589 aaPredicted RBP17.83■□□□□ 0.44
CTSA-209ENST00000493522 PTPRKQ15262 1439 aa17.82■□□□□ 0.44
CTSA-209ENST00000493522 NCKAP5LQ9HCH0 1330 aa17.81■□□□□ 0.44
CTSA-209ENST00000493522 SHANK2Q9UPX8 1470 aa17.81■□□□□ 0.44
CTSA-209ENST00000493522 DAPK1P53355 1430 aa17.81■□□□□ 0.44
CTSA-209ENST00000493522 RTEL1-TNFRSF6BF6WH68 1400 aa17.8■□□□□ 0.44
CTSA-209ENST00000493522 SPATA31D1Q6ZQQ2 1576 aa17.79■□□□□ 0.44
CTSA-209ENST00000493522 FAM50AQ14320 339 aaKnown RBP17.79■□□□□ 0.44
CTSA-209ENST00000493522 ZNF335Q9H4Z2 1342 aaPredicted RBP17.78■□□□□ 0.44
CTSA-209ENST00000493522 RSPH4AQ5TD94 716 aa17.78■□□□□ 0.44
CTSA-209ENST00000493522 ABCC5O15440 1437 aa17.78■□□□□ 0.44
CTSA-209ENST00000493522 ILDR2Q71H61 639 aa17.76■□□□□ 0.43
CTSA-209ENST00000493522 DHX29Q7Z478 1369 aaKnown RBP17.76■□□□□ 0.43
CTSA-209ENST00000493522 RRBP1Q9P2E9 1410 aaKnown RBP17.75■□□□□ 0.43
CTSA-209ENST00000493522 A2ML1A8K2U0 1454 aa17.75■□□□□ 0.43
CTSA-209ENST00000493522 SOCS7O14512 581 aa17.74■□□□□ 0.43
CTSA-209ENST00000493522 TSPY4P0CV99 314 aa17.74■□□□□ 0.43
CTSA-209ENST00000493522 TSPY10P0CW01 314 aa17.74■□□□□ 0.43
CTSA-209ENST00000493522 UBAP1LF5GYI3 381 aa17.73■□□□□ 0.43
CTSA-209ENST00000493522 FAM135AQ9P2D6 1515 aa17.72■□□□□ 0.43
CTSA-209ENST00000493522 EIF2AK4Q9P2K8 1649 aaKnown RBP17.72■□□□□ 0.43
CTSA-209ENST00000493522 KIF3BO15066 747 aa17.71■□□□□ 0.43
CTSA-209ENST00000493522 KDM5DQ9BY66 1539 aa17.71■□□□□ 0.43
CTSA-209ENST00000493522 PZPP20742 1482 aa17.69■□□□□ 0.42
CTSA-209ENST00000493522 TNRQ92752 1358 aa17.69■□□□□ 0.42
CTSA-209ENST00000493522 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.69■□□□□ 0.42
CTSA-209ENST00000493522 DUOX2Q9NRD8 1548 aa17.69■□□□□ 0.42
CTSA-209ENST00000493522 ADGRL2O95490 1459 aa17.69■□□□□ 0.42
CTSA-209ENST00000493522 WASHC2CQ9Y4E1 1318 aa17.68■□□□□ 0.42
CTSA-209ENST00000493522 RNF17Q9BXT8 1623 aaKnown RBP17.67■□□□□ 0.42
CTSA-209ENST00000493522 KIF15Q9NS87 1388 aa17.66■□□□□ 0.42
CTSA-209ENST00000493522 FBXO31Q5XUX0 539 aaPredicted RBP17.66■□□□□ 0.42
CTSA-209ENST00000493522 CHIC2Q9UKJ5 165 aa17.66■□□□□ 0.42
CTSA-209ENST00000493522 ANKRD30AQ9BXX3 1397 aa17.66■□□□□ 0.42
CTSA-209ENST00000493522 GCC2Q8IWJ2 1684 aa17.65■□□□□ 0.42
CTSA-209ENST00000493522 ITGAEP38570 1179 aa17.65■□□□□ 0.42
CTSA-209ENST00000493522 POLR1AO95602 1720 aaPredicted RBP17.64■□□□□ 0.41
CTSA-209ENST00000493522 NLRP1Q9C000 1473 aa17.63■□□□□ 0.41
CTSA-209ENST00000493522 CPS1P31327 1500 aa17.63■□□□□ 0.41
CTSA-209ENST00000493522 NEURL4Q96JN8 1562 aa17.63■□□□□ 0.41
CTSA-209ENST00000493522 CEP152O94986 1710 aa17.63■□□□□ 0.41
CTSA-209ENST00000493522 ERBINQ96RT1 1412 aa17.63■□□□□ 0.41
CTSA-209ENST00000493522 ANKLE2Q86XL3 938 aa17.62■□□□□ 0.41
CTSA-209ENST00000493522 THEMISQ8N1K5 641 aaPredicted RBP17.62■□□□□ 0.41
CTSA-209ENST00000493522 DEPDC5O75140 1603 aa17.61■□□□□ 0.41
CTSA-209ENST00000493522 ZC3H13Q5T200 1668 aaKnown RBP17.61■□□□□ 0.41
CTSA-209ENST00000493522 MROH1Q8NDA8 1641 aa17.61■□□□□ 0.41
CTSA-209ENST00000493522 RRP7BPQ9NSQ0 103 aa17.6■□□□□ 0.41
CTSA-209ENST00000493522 SCAF1Q9H7N4 1312 aaKnown RBP17.6■□□□□ 0.41
CTSA-209ENST00000493522 UGGT1Q9NYU2 1555 aa17.6■□□□□ 0.41
CTSA-209ENST00000493522 TOM1O60784 492 aa17.59■□□□□ 0.41
CTSA-209ENST00000493522 ROCK1Q13464 1354 aa17.58■□□□□ 0.4
CTSA-209ENST00000493522 PRDM15P57071 1507 aaPredicted RBP17.57■□□□□ 0.4
CTSA-209ENST00000493522 NPHP4O75161 1426 aaPredicted RBP17.56■□□□□ 0.4
CTSA-209ENST00000493522 PIP4K2BP78356 416 aa17.56■□□□□ 0.4
CTSA-209ENST00000493522 UNC13BO14795 1591 aa17.56■□□□□ 0.4
CTSA-209ENST00000493522 MED14O60244 1454 aa17.56■□□□□ 0.4
CTSA-209ENST00000493522 ABCC3O15438 1527 aa17.55■□□□□ 0.4
CTSA-209ENST00000493522 ANKRD50Q9ULJ7 1429 aa17.55■□□□□ 0.4
CTSA-209ENST00000493522 VWDEQ8N2E2 1590 aa17.54■□□□□ 0.4
CTSA-209ENST00000493522 HSPA1LP34931 641 aa17.53■□□□□ 0.4
CTSA-209ENST00000493522 IQGAP1P46940 1657 aa17.52■□□□□ 0.39
CTSA-209ENST00000493522 ERVK-7P63135 1459 aa17.51■□□□□ 0.39
CTSA-209ENST00000493522 CFAP65Q6ZU64 1925 aaKnown RBP17.51■□□□□ 0.39
CTSA-209ENST00000493522 MED1Q15648 1581 aaPredicted RBP17.49■□□□□ 0.39
CTSA-209ENST00000493522 NAIPQ13075 1403 aa17.47■□□□□ 0.39
CTSA-209ENST00000493522 IQGAP3Q86VI3 1631 aa17.47■□□□□ 0.39
CTSA-209ENST00000493522 TET3O43151 1660 aa17.47■□□□□ 0.39
CTSA-209ENST00000493522 HFM1A2PYH4 1435 aa17.47■□□□□ 0.39
CTSA-209ENST00000493522 KANK1Q14678 1352 aa17.46■□□□□ 0.39
CTSA-209ENST00000493522 SYNMO15061 1565 aa17.45■□□□□ 0.38
CTSA-209ENST00000493522 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.45■□□□□ 0.384e-7■□□□□ 11
CTSA-209ENST00000493522 SCAF11Q99590 1463 aaKnown RBP17.44■□□□□ 0.38
CTSA-209ENST00000493522 EFCAB6Q5THR3 1501 aa17.43■□□□□ 0.38
CTSA-209ENST00000493522 LRRC7Q96NW7 1537 aa17.43■□□□□ 0.38
CTSA-209ENST00000493522 UBR1Q8IWV7 1749 aa17.43■□□□□ 0.38
CTSA-209ENST00000493522 ALKQ9UM73 1620 aa17.43■□□□□ 0.38
CTSA-209ENST00000493522 LMTK2Q8IWU2 1503 aa17.42■□□□□ 0.38
CTSA-209ENST00000493522 ARHGAP31Q2M1Z3 1444 aa17.42■□□□□ 0.38
CTSA-209ENST00000493522 E9PCH4 1651 aa17.41■□□□□ 0.38
CTSA-209ENST00000493522 SLIT1O75093 1534 aa17.4■□□□□ 0.38
CTSA-209ENST00000493522 STRCP1A6NGW2 1772 aa17.4■□□□□ 0.38
CTSA-209ENST00000493522 ARHGAP23Q9P227 1491 aa17.39■□□□□ 0.37
CTSA-209ENST00000493522 TXNDC2Q86VQ3 553 aa17.38■□□□□ 0.37
CTSA-209ENST00000493522 EID1Q9Y6B2 187 aa17.38■□□□□ 0.37
CTSA-209ENST00000493522 LTKP29376 864 aa17.36■□□□□ 0.37
CTSA-209ENST00000493522 NUP155O75694 1391 aa17.35■□□□□ 0.37
CTSA-209ENST00000493522 SPHKAPQ2M3C7 1700 aa17.35■□□□□ 0.37
CTSA-209ENST00000493522 SETD5Q9C0A6 1442 aa17.34■□□□□ 0.37
CTSA-209ENST00000493522 STAG3Q9UJ98 1225 aa17.34■□□□□ 0.37
CTSA-209ENST00000493522 TMEM2Q9UHN6 1383 aa17.33■□□□□ 0.36
CTSA-209ENST00000493522 PIK3C2BO00750 1634 aa17.32■□□□□ 0.36
CTSA-209ENST00000493522 RPRD2Q5VT52 1461 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms