RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 ROCK2O75116 1388 aaKnown RBP17.1■□□□□ 0.33
HMGN1-220ENST00000492280 ZCCHC11Q5TAX3 1644 aaKnown RBP17.1■□□□□ 0.33
HMGN1-220ENST00000492280 CCDC144AA2RUR9 1427 aa17.09■□□□□ 0.33
HMGN1-220ENST00000492280 PLA2R1Q13018 1463 aa17.08■□□□□ 0.32
HMGN1-220ENST00000492280 AFAP1Q8N556 730 aa17.07■□□□□ 0.32
HMGN1-220ENST00000492280 TRAPPC8Q9Y2L5 1435 aa17.07■□□□□ 0.32
HMGN1-220ENST00000492280 UHRF1BP1Q6BDS2 1440 aa17.06■□□□□ 0.32
HMGN1-220ENST00000492280 CLASP1Q7Z460 1538 aa17.03■□□□□ 0.32
HMGN1-220ENST00000492280 MYT1LQ9UL68 1186 aa17.03■□□□□ 0.32
HMGN1-220ENST00000492280 A2MP01023 1474 aa17.02■□□□□ 0.32
HMGN1-220ENST00000492280 RSPH4AQ5TD94 716 aa17.02■□□□□ 0.31
HMGN1-220ENST00000492280 UNC13BO14795 1591 aa17.01■□□□□ 0.31
HMGN1-220ENST00000492280 PRAG1Q86YV5 1406 aa17.01■□□□□ 0.31
HMGN1-220ENST00000492280 EFCAB2Q5VUJ9 269 aa17.01■□□□□ 0.31
HMGN1-220ENST00000492280 PLCH2O75038 1416 aa17■□□□□ 0.31
HMGN1-220ENST00000492280 ZBED9Q6R2W3 1325 aa17■□□□□ 0.31
HMGN1-220ENST00000492280 SALL2Q9Y467 1007 aaPredicted RBP16.99■□□□□ 0.31
HMGN1-220ENST00000492280 MAST1Q9Y2H9 1570 aa16.98■□□□□ 0.31
HMGN1-220ENST00000492280 TRPM1Q7Z4N2 1603 aa16.98■□□□□ 0.31
HMGN1-220ENST00000492280 ABCC1P33527 1531 aa16.97■□□□□ 0.31
HMGN1-220ENST00000492280 PLXNC1O60486 1568 aa16.97■□□□□ 0.31
HMGN1-220ENST00000492280 TMC1Q8TDI8 760 aa16.97■□□□□ 0.31
HMGN1-220ENST00000492280 SPAG9O60271 1321 aaKnown RBP16.96■□□□□ 0.31
HMGN1-220ENST00000492280 IQGAP3Q86VI3 1631 aa16.96■□□□□ 0.31
HMGN1-220ENST00000492280 DISP3Q9P2K9 1392 aa16.95■□□□□ 0.3
HMGN1-220ENST00000492280 DUOX2Q9NRD8 1548 aa16.95■□□□□ 0.3
HMGN1-220ENST00000492280 B4GALNT3Q6L9W6 998 aa16.94■□□□□ 0.3
HMGN1-220ENST00000492280 CC2D1BQ5T0F9 858 aaKnown RBP16.93■□□□□ 0.3
HMGN1-220ENST00000492280 PNISRQ8TF01 805 aaKnown RBP16.91■□□□□ 0.3
HMGN1-220ENST00000492280 RBM19Q9Y4C8 960 aaKnown RBP16.9■□□□□ 0.3
HMGN1-220ENST00000492280 ERBINQ96RT1 1412 aa16.9■□□□□ 0.3
HMGN1-220ENST00000492280 ZFYVE16Q7Z3T8 1539 aa16.89■□□□□ 0.29
HMGN1-220ENST00000492280 E9PCH4 1651 aa16.89■□□□□ 0.29
HMGN1-220ENST00000492280 ARID4BQ4LE39 1312 aaPredicted RBP16.89■□□□□ 0.29
HMGN1-220ENST00000492280 KIF3BO15066 747 aa16.89■□□□□ 0.29
HMGN1-220ENST00000492280 TESK2Q96S53 571 aa16.89■□□□□ 0.29
HMGN1-220ENST00000492280 UHRF1BP1LA0JNW5 1464 aa16.89■□□□□ 0.29
HMGN1-220ENST00000492280 SCAPERQ9BY12 1400 aa16.88■□□□□ 0.29
HMGN1-220ENST00000492280 MAGI2Q86UL8 1455 aa16.88■□□□□ 0.29
HMGN1-220ENST00000492280 FANCAO15360 1455 aa16.87■□□□□ 0.29
HMGN1-220ENST00000492280 WDR7Q9Y4E6 1490 aa16.87■□□□□ 0.29
HMGN1-220ENST00000492280 MYBBP1AQ9BQG0 1328 aaKnown RBP16.86■□□□□ 0.29
HMGN1-220ENST00000492280 UGGT1Q9NYU2 1555 aa16.86■□□□□ 0.29
HMGN1-220ENST00000492280 PANK3Q9H999 370 aa16.85■□□□□ 0.29
HMGN1-220ENST00000492280 ATP10AO60312 1499 aa16.85■□□□□ 0.29
HMGN1-220ENST00000492280 COL17A1Q9UMD9 1497 aaPredicted RBP16.84■□□□□ 0.29
HMGN1-220ENST00000492280 PRDM15P57071 1507 aaPredicted RBP16.84■□□□□ 0.29
HMGN1-220ENST00000492280 GPRASP1Q5JY77 1395 aa16.83■□□□□ 0.29
HMGN1-220ENST00000492280 ADGRL1O94910 1474 aa16.83■□□□□ 0.29
HMGN1-220ENST00000492280 CFAP65Q6ZU64 1925 aaKnown RBP16.83■□□□□ 0.28
HMGN1-220ENST00000492280 NUDCQ9Y266 331 aa16.83■□□□□ 0.28
HMGN1-220ENST00000492280 KTN1Q86UP2 1357 aaKnown RBP16.82■□□□□ 0.28
HMGN1-220ENST00000492280 PER1O15534 1290 aaPredicted RBP16.82■□□□□ 0.28
HMGN1-220ENST00000492280 SENP3Q9H4L4 574 aaPredicted RBP16.82■□□□□ 0.28
HMGN1-220ENST00000492280 CLTCL1P53675 1640 aa16.82■□□□□ 0.28
HMGN1-220ENST00000492280 ATP7AQ04656 1500 aa16.82■□□□□ 0.28
HMGN1-220ENST00000492280 ASXL2Q76L83 1435 aa16.82■□□□□ 0.28
HMGN1-220ENST00000492280 PPP4R2Q9NY27 417 aa16.82■□□□□ 0.28
HMGN1-220ENST00000492280 OSCARQ8IYS5 282 aa16.81■□□□□ 0.28
HMGN1-220ENST00000492280 RALBP1Q15311 655 aa16.79■□□□□ 0.28
HMGN1-220ENST00000492280 SMG6Q86US8 1419 aaKnown RBP16.79■□□□□ 0.28
HMGN1-220ENST00000492280 SPHKAPQ2M3C7 1700 aa16.79■□□□□ 0.28
HMGN1-220ENST00000492280 TMF1P82094 1093 aa16.78■□□□□ 0.28
HMGN1-220ENST00000492280 BRD4O60885 1362 aaPredicted RBP16.78■□□□□ 0.28
HMGN1-220ENST00000492280 PARD3Q8TEW0 1356 aa16.78■□□□□ 0.28
HMGN1-220ENST00000492280 ABCA9Q8IUA7 1624 aa16.78■□□□□ 0.28
HMGN1-220ENST00000492280 MADDQ8WXG6 1647 aa16.78■□□□□ 0.28
HMGN1-220ENST00000492280 NPM1P06748 294 aaKnown RBP eCLIP16.77■□□□□ 0.28
HMGN1-220ENST00000492280 EIF2AK4Q9P2K8 1649 aaKnown RBP16.77■□□□□ 0.28
HMGN1-220ENST00000492280 CHGAP10645 457 aaKnown RBP16.77■□□□□ 0.28
HMGN1-220ENST00000492280 NLRP13Q86W25 1043 aa16.77■□□□□ 0.28
HMGN1-220ENST00000492280 LRPPRCP42704 1394 aaKnown RBP16.77■□□□□ 0.27
HMGN1-220ENST00000492280 INO80Q9ULG1 1556 aaPredicted RBP16.76■□□□□ 0.27
HMGN1-220ENST00000492280 CDCA7LQ96GN5 454 aa16.76■□□□□ 0.27
HMGN1-220ENST00000492280 TRPM2O94759 1503 aa16.76■□□□□ 0.27
HMGN1-220ENST00000492280 RNF17Q9BXT8 1623 aaKnown RBP16.76■□□□□ 0.27
HMGN1-220ENST00000492280 CFAP70Q5T0N1 1121 aa16.75■□□□□ 0.27
HMGN1-220ENST00000492280 RTEL1-TNFRSF6BF6WH68 1400 aa16.74■□□□□ 0.27
HMGN1-220ENST00000492280 CEP152O94986 1710 aa16.74■□□□□ 0.27
HMGN1-220ENST00000492280 GGT6Q6P531 493 aa16.73■□□□□ 0.27
HMGN1-220ENST00000492280 ADGRF5Q8IZF2 1346 aa16.73■□□□□ 0.27
HMGN1-220ENST00000492280 DEPDC5O75140 1603 aa16.73■□□□□ 0.27
HMGN1-220ENST00000492280 KANK1Q14678 1352 aa16.73■□□□□ 0.27
HMGN1-220ENST00000492280 LAMC1P11047 1609 aa16.72■□□□□ 0.27
HMGN1-220ENST00000492280 MROH1Q8NDA8 1641 aa16.72■□□□□ 0.27
HMGN1-220ENST00000492280 TET3O43151 1660 aa16.72■□□□□ 0.27
HMGN1-220ENST00000492280 NUTM2DQ5VT03 806 aaPredicted RBP16.71■□□□□ 0.27
HMGN1-220ENST00000492280 ARAP3Q8WWN8 1544 aa16.7■□□□□ 0.26
HMGN1-220ENST00000492280 KIDINS220Q9ULH0 1771 aa16.7■□□□□ 0.26
HMGN1-220ENST00000492280 PTPRTO14522 1441 aa16.7■□□□□ 0.26
HMGN1-220ENST00000492280 MSH5O43196 834 aa16.69■□□□□ 0.26
HMGN1-220ENST00000492280 IQGAP1P46940 1657 aa16.69■□□□□ 0.26
HMGN1-220ENST00000492280 RAPGEF3O95398 923 aa16.68■□□□□ 0.26
HMGN1-220ENST00000492280 CCDC136Q96JN2 1154 aa16.68■□□□□ 0.26
HMGN1-220ENST00000492280 MROH2AA6NES4 1674 aa16.68■□□□□ 0.26
HMGN1-220ENST00000492280 KNSTRNQ9Y448 316 aa16.67■□□□□ 0.26
HMGN1-220ENST00000492280 PPRC1Q5VV67 1664 aaKnown RBP16.67■□□□□ 0.26
HMGN1-220ENST00000492280 PLIN1O60240 522 aa16.66■□□□□ 0.26
HMGN1-220ENST00000492280 SCAF11Q99590 1463 aaKnown RBP16.66■□□□□ 0.26
HMGN1-220ENST00000492280 VWDEQ8N2E2 1590 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms