RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 SHANK2Q9UPX8 1470 aa26.3■■□□□ 1.8
USP48-210ENST00000489108 TNRQ92752 1358 aa26.29■■□□□ 1.8
USP48-210ENST00000489108 MBD5Q9P267 1494 aa26.29■■□□□ 1.8
USP48-210ENST00000489108 CPS1P31327 1500 aa26.28■■□□□ 1.8
USP48-210ENST00000489108 NEURL4Q96JN8 1562 aa26.28■■□□□ 1.8
USP48-210ENST00000489108 POLR1AO95602 1720 aaPredicted RBP26.28■■□□□ 1.8
USP48-210ENST00000489108 KIF3BO15066 747 aa26.27■■□□□ 1.8
USP48-210ENST00000489108 RTEL1-TNFRSF6BF6WH68 1400 aa26.26■■□□□ 1.79
USP48-210ENST00000489108 ANKLE2Q86XL3 938 aa26.26■■□□□ 1.79
USP48-210ENST00000489108 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.23■■□□□ 1.79
USP48-210ENST00000489108 TIAM1Q13009 1591 aa26.23■■□□□ 1.79
USP48-210ENST00000489108 THEMISQ8N1K5 641 aaPredicted RBP26.21■■□□□ 1.79
USP48-210ENST00000489108 WASHC2CQ9Y4E1 1318 aa26.2■■□□□ 1.79
USP48-210ENST00000489108 PZPP20742 1482 aa26.2■■□□□ 1.78
USP48-210ENST00000489108 VWDEQ8N2E2 1590 aa26.18■■□□□ 1.78
USP48-210ENST00000489108 MIA2Q96PC5 1412 aa26.17■■□□□ 1.78
USP48-210ENST00000489108 PHF23Q9BUL5 403 aaPredicted RBP26.17■■□□□ 1.78
USP48-210ENST00000489108 KDM5DQ9BY66 1539 aa26.16■■□□□ 1.78
USP48-210ENST00000489108 NPHP4O75161 1426 aaPredicted RBP26.15■■□□□ 1.78
USP48-210ENST00000489108 ALKQ9UM73 1620 aa26.14■■□□□ 1.78
USP48-210ENST00000489108 SENP3Q9H4L4 574 aaPredicted RBP26.13■■□□□ 1.77
USP48-210ENST00000489108 UGGT1Q9NYU2 1555 aa26.12■■□□□ 1.77
USP48-210ENST00000489108 MED14O60244 1454 aa26.12■■□□□ 1.77
USP48-210ENST00000489108 EHBP1L1Q8N3D4 1523 aa26.12■■□□□ 1.77
USP48-210ENST00000489108 CEP162Q5TB80 1403 aa26.12■■□□□ 1.77
USP48-210ENST00000489108 NLRP1Q9C000 1473 aa26.11■■□□□ 1.77
USP48-210ENST00000489108 FAM135AQ9P2D6 1515 aa26.11■■□□□ 1.77
USP48-210ENST00000489108 CCDC141Q6ZP82 1450 aa26.11■■□□□ 1.77
USP48-210ENST00000489108 RSPH4AQ5TD94 716 aa26.1■■□□□ 1.77
USP48-210ENST00000489108 DEPDC5O75140 1603 aa26.1■■□□□ 1.77
USP48-210ENST00000489108 STRCP1A6NGW2 1772 aa26.06■■□□□ 1.76
USP48-210ENST00000489108 CAMSAP2Q08AD1 1489 aa26.05■■□□□ 1.76
USP48-210ENST00000489108 IQGAP1P46940 1657 aa26.05■■□□□ 1.76
USP48-210ENST00000489108 LRRC7Q96NW7 1537 aa26.04■■□□□ 1.76
USP48-210ENST00000489108 TSPY4P0CV99 314 aa26.03■■□□□ 1.76
USP48-210ENST00000489108 TSPY10P0CW01 314 aa26.03■■□□□ 1.76
USP48-210ENST00000489108 NCOA2Q15596 1464 aa26.01■■□□□ 1.75
USP48-210ENST00000489108 ARHGEF5Q12774 1597 aa25.95■■□□□ 1.75
USP48-210ENST00000489108 CFAP65Q6ZU64 1925 aaKnown RBP25.95■■□□□ 1.74
USP48-210ENST00000489108 RNF17Q9BXT8 1623 aaKnown RBP25.95■■□□□ 1.74
USP48-210ENST00000489108 ABCC3O15438 1527 aa25.94■■□□□ 1.74
USP48-210ENST00000489108 RGS17Q9UGC6 210 aaPredicted RBP25.94■■□□□ 1.74
USP48-210ENST00000489108 ERVK-7P63135 1459 aa25.92■■□□□ 1.74
USP48-210ENST00000489108 SYNMO15061 1565 aa25.92■■□□□ 1.74
USP48-210ENST00000489108 ZC3H13Q5T200 1668 aaKnown RBP25.91■■□□□ 1.74
USP48-210ENST00000489108 LTKP29376 864 aa25.9■■□□□ 1.74
USP48-210ENST00000489108 TXNDC2Q86VQ3 553 aa25.88■■□□□ 1.73
USP48-210ENST00000489108 UBR1Q8IWV7 1749 aa25.88■■□□□ 1.73
USP48-210ENST00000489108 SCAF11Q99590 1463 aaKnown RBP25.86■■□□□ 1.73
USP48-210ENST00000489108 CEP152O94986 1710 aa25.84■■□□□ 1.73
USP48-210ENST00000489108 MAST1Q9Y2H9 1570 aa25.83■■□□□ 1.73
USP48-210ENST00000489108 MROH1Q8NDA8 1641 aa25.83■■□□□ 1.73
USP48-210ENST00000489108 XIRP1Q702N8 1843 aaKnown RBP25.83■■□□□ 1.73
USP48-210ENST00000489108 EIF2AK4Q9P2K8 1649 aaKnown RBP25.82■■□□□ 1.72
USP48-210ENST00000489108 ARHGAP23Q9P227 1491 aa25.81■■□□□ 1.72
USP48-210ENST00000489108 SLIT1O75093 1534 aa25.79■■□□□ 1.72
USP48-210ENST00000489108 EID1Q9Y6B2 187 aa25.79■■□□□ 1.72
USP48-210ENST00000489108 POTEAQ6S8J7 498 aa25.77■■□□□ 1.72
USP48-210ENST00000489108 FAM135BQ49AJ0 1406 aa25.76■■□□□ 1.71
USP48-210ENST00000489108 LRRC9Q6ZRR7 1453 aa25.75■■□□□ 1.71
USP48-210ENST00000489108 DUOX2Q9NRD8 1548 aa25.73■■□□□ 1.71
USP48-210ENST00000489108 ARHGAP31Q2M1Z3 1444 aa25.72■■□□□ 1.71
USP48-210ENST00000489108 KANK4Q5T7N3 995 aaPredicted RBP25.71■■□□□ 1.71
USP48-210ENST00000489108 STAG3Q9UJ98 1225 aa25.71■■□□□ 1.71
USP48-210ENST00000489108 TMEM94Q12767 1356 aa25.7■■□□□ 1.71
USP48-210ENST00000489108 TMEM2Q9UHN6 1383 aa25.7■■□□□ 1.71
USP48-210ENST00000489108 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.7■■□□□ 1.7
USP48-210ENST00000489108 PIK3C2BO00750 1634 aa25.7■■□□□ 1.7
USP48-210ENST00000489108 RBM33Q96EV2 1170 aaKnown RBP25.69■■□□□ 1.7
USP48-210ENST00000489108 KCNA6P17658 529 aa25.68■■□□□ 1.7
USP48-210ENST00000489108 PROSER2Q86WR7 435 aaPredicted RBP25.68■■□□□ 1.7
USP48-210ENST00000489108 RRP7BPQ9NSQ0 103 aa25.68■■□□□ 1.7
USP48-210ENST00000489108 MYOM3Q5VTT5 1437 aa25.68■■□□□ 1.7
USP48-210ENST00000489108 SLC26A8Q96RN1 970 aa25.66■■□□□ 1.7
USP48-210ENST00000489108 KIF15Q9NS87 1388 aa25.66■■□□□ 1.7
USP48-210ENST00000489108 IDI1Q13907 227 aa25.65■■□□□ 1.7
USP48-210ENST00000489108 PRDM15P57071 1507 aaPredicted RBP25.64■■□□□ 1.7
USP48-210ENST00000489108 ROBO1Q9Y6N7 1651 aa25.64■■□□□ 1.69
USP48-210ENST00000489108 VPS8Q8N3P4 1428 aa25.61■■□□□ 1.69
USP48-210ENST00000489108 ERBINQ96RT1 1412 aa25.61■■□□□ 1.69
USP48-210ENST00000489108 EFCAB6Q5THR3 1501 aa25.6■■□□□ 1.69
USP48-210ENST00000489108 TET3O43151 1660 aa25.6■■□□□ 1.69
USP48-210ENST00000489108 MAP3K1Q13233 1512 aa25.59■■□□□ 1.69
USP48-210ENST00000489108 ABCC5O15440 1437 aa25.59■■□□□ 1.69
USP48-210ENST00000489108 KANK1Q14678 1352 aa25.58■■□□□ 1.69
USP48-210ENST00000489108 KDM5AP29375 1690 aaKnown RBP25.56■■□□□ 1.68
USP48-210ENST00000489108 SLAIN2Q9P270 581 aa25.55■■□□□ 1.68
USP48-210ENST00000489108 BCANQ96GW7 911 aa25.54■■□□□ 1.68
USP48-210ENST00000489108 CROCC2H7BZ55 1655 aa25.52■■□□□ 1.68
USP48-210ENST00000489108 MSH6P52701 1360 aa25.52■■□□□ 1.68
USP48-210ENST00000489108 SETD1AO15047 1707 aaKnown RBP25.51■■□□□ 1.68
USP48-210ENST00000489108 LOC105371045A0A1W2PR82 267 aa25.5■■□□□ 1.67
USP48-210ENST00000489108 PHLPP1O60346 1717 aa25.5■■□□□ 1.67
USP48-210ENST00000489108 NKTRP30414 1462 aaKnown RBP25.5■■□□□ 1.67
USP48-210ENST00000489108 CHIC2Q9UKJ5 165 aa25.5■■□□□ 1.67
USP48-210ENST00000489108 LMTK2Q8IWU2 1503 aa25.49■■□□□ 1.67
USP48-210ENST00000489108 JCADQ9P266 1359 aa25.49■■□□□ 1.67
USP48-210ENST00000489108 NWD1Q149M9 1564 aa25.48■■□□□ 1.67
USP48-210ENST00000489108 NOS1P29475 1434 aa25.48■■□□□ 1.67
USP48-210ENST00000489108 DAPK1P53355 1430 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms