RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 ANP32EQ9BTT0 268 aa17.32■□□□□ 0.36
CLIC4-202ENST00000488683 NBPF1Q3BBV0 1214 aa17.31■□□□□ 0.36
CLIC4-202ENST00000488683 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.3■□□□□ 0.366e-6■■■■■ 38.2
CLIC4-202ENST00000488683 SHROOM2Q13796 1616 aa17.3■□□□□ 0.36
CLIC4-202ENST00000488683 ARHGAP5Q13017 1502 aa17.29■□□□□ 0.36
CLIC4-202ENST00000488683 ARID4BQ4LE39 1312 aaPredicted RBP17.26■□□□□ 0.35
CLIC4-202ENST00000488683 TMC1Q8TDI8 760 aa17.25■□□□□ 0.35
CLIC4-202ENST00000488683 PLA2R1Q13018 1463 aa17.25■□□□□ 0.35
CLIC4-202ENST00000488683 UNC13BO14795 1591 aa17.24■□□□□ 0.35
CLIC4-202ENST00000488683 ROCK2O75116 1388 aaKnown RBP17.24■□□□□ 0.35
CLIC4-202ENST00000488683 MYO5CQ9NQX4 1742 aa17.24■□□□□ 0.35
CLIC4-202ENST00000488683 MAST1Q9Y2H9 1570 aa17.23■□□□□ 0.35
CLIC4-202ENST00000488683 PPP4R2Q9NY27 417 aa17.23■□□□□ 0.35
CLIC4-202ENST00000488683 ABCC2Q92887 1545 aa17.23■□□□□ 0.35
CLIC4-202ENST00000488683 RSPH4AQ5TD94 716 aa17.23■□□□□ 0.35
CLIC4-202ENST00000488683 TRPM1Q7Z4N2 1603 aa17.23■□□□□ 0.35
CLIC4-202ENST00000488683 CCDC144AA2RUR9 1427 aa17.22■□□□□ 0.35
CLIC4-202ENST00000488683 PLEKHH2Q8IVE3 1493 aa17.22■□□□□ 0.35
CLIC4-202ENST00000488683 PRAG1Q86YV5 1406 aa17.21■□□□□ 0.35
CLIC4-202ENST00000488683 E9PCH4 1651 aa17.21■□□□□ 0.35
CLIC4-202ENST00000488683 PNISRQ8TF01 805 aaKnown RBP17.2■□□□□ 0.34
CLIC4-202ENST00000488683 CC2D1BQ5T0F9 858 aaKnown RBP17.2■□□□□ 0.34
CLIC4-202ENST00000488683 PLXNC1O60486 1568 aa17.19■□□□□ 0.34
CLIC4-202ENST00000488683 A2MP01023 1474 aa17.19■□□□□ 0.34
CLIC4-202ENST00000488683 IQGAP3Q86VI3 1631 aa17.18■□□□□ 0.34
CLIC4-202ENST00000488683 ERICH6BQ5W0A0 696 aa17.18■□□□□ 0.34
CLIC4-202ENST00000488683 SMG6Q86US8 1419 aaKnown RBP17.17■□□□□ 0.34
CLIC4-202ENST00000488683 ZCCHC11Q5TAX3 1644 aaKnown RBP17.16■□□□□ 0.34
CLIC4-202ENST00000488683 NUDCQ9Y266 331 aa17.14■□□□□ 0.33
CLIC4-202ENST00000488683 DUOX2Q9NRD8 1548 aa17.13■□□□□ 0.33
CLIC4-202ENST00000488683 PLCH2O75038 1416 aa17.12■□□□□ 0.33
CLIC4-202ENST00000488683 MAGI2Q86UL8 1455 aa17.12■□□□□ 0.33
CLIC4-202ENST00000488683 DISP3Q9P2K9 1392 aa17.12■□□□□ 0.33
CLIC4-202ENST00000488683 MYBBP1AQ9BQG0 1328 aaKnown RBP17.11■□□□□ 0.33
CLIC4-202ENST00000488683 LRPPRCP42704 1394 aaKnown RBP17.11■□□□□ 0.33
CLIC4-202ENST00000488683 GPRASP1Q5JY77 1395 aa17.11■□□□□ 0.33
CLIC4-202ENST00000488683 CDCA7LQ96GN5 454 aa17.11■□□□□ 0.33
CLIC4-202ENST00000488683 TRAPPC8Q9Y2L5 1435 aa17.11■□□□□ 0.33
CLIC4-202ENST00000488683 AFAP1Q8N556 730 aa17.11■□□□□ 0.33
CLIC4-202ENST00000488683 ABCC1P33527 1531 aa17.1■□□□□ 0.33
CLIC4-202ENST00000488683 PRDM15P57071 1507 aaPredicted RBP17.1■□□□□ 0.33
CLIC4-202ENST00000488683 CLASP1Q7Z460 1538 aa17.09■□□□□ 0.33
CLIC4-202ENST00000488683 BRD4O60885 1362 aaPredicted RBP17.09■□□□□ 0.33
CLIC4-202ENST00000488683 ERBINQ96RT1 1412 aa17.09■□□□□ 0.33
CLIC4-202ENST00000488683 TESK2Q96S53 571 aa17.09■□□□□ 0.33
CLIC4-202ENST00000488683 RALBP1Q15311 655 aa17.08■□□□□ 0.33
CLIC4-202ENST00000488683 CCDC136Q96JN2 1154 aa17.08■□□□□ 0.33
CLIC4-202ENST00000488683 PANK3Q9H999 370 aa17.08■□□□□ 0.32
CLIC4-202ENST00000488683 COL17A1Q9UMD9 1497 aaPredicted RBP17.08■□□□□ 0.32
CLIC4-202ENST00000488683 PER1O15534 1290 aaPredicted RBP17.07■□□□□ 0.32
CLIC4-202ENST00000488683 MYT1LQ9UL68 1186 aa17.07■□□□□ 0.32
CLIC4-202ENST00000488683 RNF123Q5XPI4 1314 aa17.07■□□□□ 0.32
CLIC4-202ENST00000488683 LAMC1P11047 1609 aa17.07■□□□□ 0.32
CLIC4-202ENST00000488683 ATP10AO60312 1499 aa17.07■□□□□ 0.32
CLIC4-202ENST00000488683 EFCAB2Q5VUJ9 269 aa17.06■□□□□ 0.32
CLIC4-202ENST00000488683 SKAP1Q86WV1 359 aa17.06■□□□□ 0.32
CLIC4-202ENST00000488683 PARD3Q8TEW0 1356 aa17.06■□□□□ 0.32
CLIC4-202ENST00000488683 PLIN1O60240 522 aa17.06■□□□□ 0.32
CLIC4-202ENST00000488683 KTN1Q86UP2 1357 aaKnown RBP17.06■□□□□ 0.32
CLIC4-202ENST00000488683 UHRF1BP1LA0JNW5 1464 aa17.04■□□□□ 0.32
CLIC4-202ENST00000488683 EIF2AK4Q9P2K8 1649 aaKnown RBP17.04■□□□□ 0.32
CLIC4-202ENST00000488683 EXOC6Q8TAG9 804 aa17.04■□□□□ 0.32
CLIC4-202ENST00000488683 SENP3Q9H4L4 574 aaPredicted RBP17.03■□□□□ 0.32
CLIC4-202ENST00000488683 RNF17Q9BXT8 1623 aaKnown RBP17.02■□□□□ 0.32
CLIC4-202ENST00000488683 NLRP13Q86W25 1043 aa17.01■□□□□ 0.31
CLIC4-202ENST00000488683 ERICH6Q7L0X2 663 aa17.01■□□□□ 0.31
CLIC4-202ENST00000488683 FANCIQ9NVI1 1328 aa17.01■□□□□ 0.31
CLIC4-202ENST00000488683 ZFYVE16Q7Z3T8 1539 aa17■□□□□ 0.31
CLIC4-202ENST00000488683 SPAG9O60271 1321 aaKnown RBP17■□□□□ 0.31
CLIC4-202ENST00000488683 MADDQ8WXG6 1647 aa16.99■□□□□ 0.31
CLIC4-202ENST00000488683 PAK3O75914 559 aaPredicted RBP16.98■□□□□ 0.31
CLIC4-202ENST00000488683 SPHKAPQ2M3C7 1700 aa16.96■□□□□ 0.31
CLIC4-202ENST00000488683 CLTCL1P53675 1640 aa16.96■□□□□ 0.31
CLIC4-202ENST00000488683 TMF1P82094 1093 aa16.96■□□□□ 0.3
CLIC4-202ENST00000488683 RRP1P56182 461 aaKnown RBP16.95■□□□□ 0.3
CLIC4-202ENST00000488683 RCAN3Q9UKA8 241 aa16.95■□□□□ 0.3
CLIC4-202ENST00000488683 TRPM2O94759 1503 aa16.95■□□□□ 0.3
CLIC4-202ENST00000488683 CEP152O94986 1710 aa16.95■□□□□ 0.3
CLIC4-202ENST00000488683 IQGAP1P46940 1657 aa16.95■□□□□ 0.3
CLIC4-202ENST00000488683 DEPDC5O75140 1603 aa16.94■□□□□ 0.3
CLIC4-202ENST00000488683 RTEL1-TNFRSF6BF6WH68 1400 aa16.93■□□□□ 0.3
CLIC4-202ENST00000488683 NPM2Q86SE8 214 aaKnown RBP16.93■□□□□ 0.3
CLIC4-202ENST00000488683 NBR1Q14596 966 aa16.93■□□□□ 0.3
CLIC4-202ENST00000488683 ADAMTS8Q9UP79 889 aa16.93■□□□□ 0.3
CLIC4-202ENST00000488683 ARAP3Q8WWN8 1544 aa16.93■□□□□ 0.3
CLIC4-202ENST00000488683 WDR7Q9Y4E6 1490 aa16.92■□□□□ 0.3
CLIC4-202ENST00000488683 PTPRTO14522 1441 aa16.92■□□□□ 0.3
CLIC4-202ENST00000488683 KIF3BO15066 747 aa16.91■□□□□ 0.3
CLIC4-202ENST00000488683 ABCA9Q8IUA7 1624 aa16.91■□□□□ 0.3
CLIC4-202ENST00000488683 INO80Q9ULG1 1556 aaPredicted RBP16.91■□□□□ 0.3
CLIC4-202ENST00000488683 ATP7AQ04656 1500 aa16.91■□□□□ 0.3
CLIC4-202ENST00000488683 WASHC2CQ9Y4E1 1318 aa16.91■□□□□ 0.3
CLIC4-202ENST00000488683 FANCAO15360 1455 aa16.91■□□□□ 0.3
CLIC4-202ENST00000488683 C20orf194Q5TEA3 1177 aa16.9■□□□□ 0.3
CLIC4-202ENST00000488683 TET3O43151 1660 aa16.9■□□□□ 0.3
CLIC4-202ENST00000488683 CCDC146Q8IYE0 955 aa16.9■□□□□ 0.3
CLIC4-202ENST00000488683 UGGT1Q9NYU2 1555 aa16.89■□□□□ 0.29
CLIC4-202ENST00000488683 BLMP54132 1417 aaPredicted RBP16.89■□□□□ 0.29
CLIC4-202ENST00000488683 SCAPERQ9BY12 1400 aa16.88■□□□□ 0.29
CLIC4-202ENST00000488683 VWDEQ8N2E2 1590 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms