RNA–Protein interactions for RNA: ENST00000487674.1

PRKCB-208, Transcript of protein kinase C beta, human

TSL 2

Gene PRKCB, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCB-208	ENST00000487674	NPAT	Q14207	1427 aa		13.75	□□□□□ -0.21
PRKCB-208	ENST00000487674	CERK	Q8TCT0	537 aa		13.74	□□□□□ -0.21
PRKCB-208	ENST00000487674	CLTC	Q00610	1675 aa	Known RBP	13.74	□□□□□ -0.21
PRKCB-208	ENST00000487674	MBD5	Q9P267	1494 aa		13.73	□□□□□ -0.21
PRKCB-208	ENST00000487674	PTPRT	O14522	1441 aa		13.73	□□□□□ -0.21
PRKCB-208	ENST00000487674	MYCN	P04198	464 aa	Predicted RBP	13.72	□□□□□ -0.21
PRKCB-208	ENST00000487674	ZNF142	P52746	1687 aa	Predicted RBP	13.72	□□□□□ -0.21
PRKCB-208	ENST00000487674	NCOA1	Q15788	1441 aa		13.71	□□□□□ -0.22
PRKCB-208	ENST00000487674	MYO3A	Q8NEV4	1616 aa		13.71	□□□□□ -0.22
PRKCB-208	ENST00000487674	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.7	□□□□□ -0.22
PRKCB-208	ENST00000487674	ZMYM3	Q14202	1370 aa		13.7	□□□□□ -0.22
PRKCB-208	ENST00000487674	NCOA2	Q15596	1464 aa		13.69	□□□□□ -0.22
PRKCB-208	ENST00000487674	CAMSAP1	Q5T5Y3	1602 aa		13.68	□□□□□ -0.22
PRKCB-208	ENST00000487674	CAMSAP2	Q08AD1	1489 aa		13.68	□□□□□ -0.22
PRKCB-208	ENST00000487674	CCDC141	Q6ZP82	1450 aa		13.68	□□□□□ -0.22
PRKCB-208	ENST00000487674	ZNF644	Q9H582	1327 aa	Predicted RBP	13.68	□□□□□ -0.22
PRKCB-208	ENST00000487674	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.67	□□□□□ -0.22
PRKCB-208	ENST00000487674	PTPRK	Q15262	1439 aa		13.66	□□□□□ -0.22
PRKCB-208	ENST00000487674	FAM135A	Q9P2D6	1515 aa		13.66	□□□□□ -0.22
PRKCB-208	ENST00000487674	POLA2	Q14181	598 aa		13.66	□□□□□ -0.22
PRKCB-208	ENST00000487674	LTBP4	Q8N2S1	1624 aa		13.65	□□□□□ -0.22
PRKCB-208	ENST00000487674	PLA2R1	Q13018	1463 aa		13.65	□□□□□ -0.22
PRKCB-208	ENST00000487674	ARHGEF5	Q12774	1597 aa		13.65	□□□□□ -0.22
PRKCB-208	ENST00000487674	VPS8	Q8N3P4	1428 aa		13.64	□□□□□ -0.23
PRKCB-208	ENST00000487674	DHX29	Q7Z478	1369 aa	Known RBP	13.64	□□□□□ -0.23
PRKCB-208	ENST00000487674	GGT6	Q6P531	493 aa		13.64	□□□□□ -0.23
PRKCB-208	ENST00000487674	IQSEC2	Q5JU85	1478 aa		13.63	□□□□□ -0.23
PRKCB-208	ENST00000487674	KDM5D	Q9BY66	1539 aa		13.63	□□□□□ -0.23
PRKCB-208	ENST00000487674	LRRC9	Q6ZRR7	1453 aa		13.62	□□□□□ -0.23
PRKCB-208	ENST00000487674	TCOF1	Q13428	1488 aa	Known RBP	13.61	□□□□□ -0.23
PRKCB-208	ENST00000487674	RSPH4A	Q5TD94	716 aa		13.61	□□□□□ -0.23
PRKCB-208	ENST00000487674	MAP3K1	Q13233	1512 aa		13.6	□□□□□ -0.23
PRKCB-208	ENST00000487674	A2ML1	A8K2U0	1454 aa		13.6	□□□□□ -0.23
PRKCB-208	ENST00000487674	MAST1	Q9Y2H9	1570 aa		13.59	□□□□□ -0.23
PRKCB-208	ENST00000487674	DNMT1	P26358	1616 aa	Known RBP	13.59	□□□□□ -0.23
PRKCB-208	ENST00000487674	PZP	P20742	1482 aa		13.59	□□□□□ -0.23
PRKCB-208	ENST00000487674	PKD2	Q13563	968 aa		13.58	□□□□□ -0.24
PRKCB-208	ENST00000487674	RBM42	Q9BTD8	480 aa	Known RBP	13.58	□□□□□ -0.24
PRKCB-208	ENST00000487674	RNF17	Q9BXT8	1623 aa	Known RBP	13.57	□□□□□ -0.24
PRKCB-208	ENST00000487674	POLR1A	O95602	1720 aa	Predicted RBP	13.57	□□□□□ -0.24
PRKCB-208	ENST00000487674	KIF3B	O15066	747 aa		13.57	□□□□□ -0.24
PRKCB-208	ENST00000487674	NCKAP5L	Q9HCH0	1330 aa		13.57	□□□□□ -0.24
PRKCB-208	ENST00000487674	ZC3H13	Q5T200	1668 aa	Known RBP	13.56	□□□□□ -0.24
PRKCB-208	ENST00000487674	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.56	□□□□□ -0.24
PRKCB-208	ENST00000487674	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.56	□□□□□ -0.24
PRKCB-208	ENST00000487674	TNR	Q92752	1358 aa		13.56	□□□□□ -0.24
PRKCB-208	ENST00000487674	MYOM3	Q5VTT5	1437 aa		13.55	□□□□□ -0.24
PRKCB-208	ENST00000487674	MIA2	Q96PC5	1412 aa		13.55	□□□□□ -0.24
PRKCB-208	ENST00000487674	TSPY4	P0CV99	314 aa		13.54	□□□□□ -0.24
PRKCB-208	ENST00000487674	TSPY10	P0CW01	314 aa		13.54	□□□□□ -0.24
PRKCB-208	ENST00000487674	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.53	□□□□□ -0.24
PRKCB-208	ENST00000487674	WASHC2C	Q9Y4E1	1318 aa		13.53	□□□□□ -0.24
PRKCB-208	ENST00000487674	NEURL4	Q96JN8	1562 aa		13.53	□□□□□ -0.24
PRKCB-208	ENST00000487674	LOC105371045	A0A1W2PR82	267 aa		13.52	□□□□□ -0.25
PRKCB-208	ENST00000487674	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.52	□□□□□ -0.25
PRKCB-208	ENST00000487674	NLRP1	Q9C000	1473 aa		13.52	□□□□□ -0.25
PRKCB-208	ENST00000487674	ABCC3	O15438	1527 aa		13.52	□□□□□ -0.25
PRKCB-208	ENST00000487674	CROCC2	H7BZ55	1655 aa		13.51	□□□□□ -0.25
PRKCB-208	ENST00000487674	MROH1	Q8NDA8	1641 aa		13.51	□□□□□ -0.25
PRKCB-208	ENST00000487674	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.51	□□□□□ -0.25
PRKCB-208	ENST00000487674	KANK4	Q5T7N3	995 aa	Predicted RBP	13.5	□□□□□ -0.25
PRKCB-208	ENST00000487674	SPATA31D1	Q6ZQQ2	1576 aa		13.49	□□□□□ -0.25
PRKCB-208	ENST00000487674	UGGT1	Q9NYU2	1555 aa		13.49	□□□□□ -0.25
PRKCB-208	ENST00000487674	SHANK2	Q9UPX8	1470 aa		13.49	□□□□□ -0.25
PRKCB-208	ENST00000487674	DEPDC5	O75140	1603 aa		13.49	□□□□□ -0.25
PRKCB-208	ENST00000487674	DUOX2	Q9NRD8	1548 aa		13.49	□□□□□ -0.25
PRKCB-208	ENST00000487674	CPS1	P31327	1500 aa		13.48	□□□□□ -0.25
PRKCB-208	ENST00000487674	CEP152	O94986	1710 aa		13.47	□□□□□ -0.25
PRKCB-208	ENST00000487674	FOXD4L1	Q9NU39	408 aa		13.47	□□□□□ -0.25
PRKCB-208	ENST00000487674	PRDM15	P57071	1507 aa	Predicted RBP	13.47	□□□□□ -0.25
PRKCB-208	ENST00000487674	ERVK-7	P63135	1459 aa		13.47	□□□□□ -0.25
PRKCB-208	ENST00000487674	PTPN23	Q9H3S7	1636 aa		13.46	□□□□□ -0.25
PRKCB-208	ENST00000487674	DISP3	Q9P2K9	1392 aa		13.46	□□□□□ -0.25
PRKCB-208	ENST00000487674	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.45	□□□□□ -0.26
PRKCB-208	ENST00000487674	MED14	O60244	1454 aa		13.45	□□□□□ -0.26
PRKCB-208	ENST00000487674	ERBIN	Q96RT1	1412 aa		13.45	□□□□□ -0.26
PRKCB-208	ENST00000487674	IQGAP1	P46940	1657 aa		13.44	□□□□□ -0.26
PRKCB-208	ENST00000487674	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.44	□□□□□ -0.26
PRKCB-208	ENST00000487674	VWDE	Q8N2E2	1590 aa		13.44	□□□□□ -0.26
PRKCB-208	ENST00000487674	KIF15	Q9NS87	1388 aa		13.44	□□□□□ -0.26
PRKCB-208	ENST00000487674	UBAP1L	F5GYI3	381 aa		13.43	□□□□□ -0.26
PRKCB-208	ENST00000487674	ABCC5	O15440	1437 aa		13.43	□□□□□ -0.26
PRKCB-208	ENST00000487674	NPHP4	O75161	1426 aa	Predicted RBP	13.43	□□□□□ -0.26
PRKCB-208	ENST00000487674	ANKLE2	Q86XL3	938 aa		13.43	□□□□□ -0.26
PRKCB-208	ENST00000487674	UBR1	Q8IWV7	1749 aa		13.42	□□□□□ -0.26
PRKCB-208	ENST00000487674	FGD6	Q6ZV73	1430 aa		13.42	□□□□□ -0.26
PRKCB-208	ENST00000487674	CHRDL2	Q6WN34	429 aa		13.42	□□□□□ -0.26
PRKCB-208	ENST00000487674	DAPK1	P53355	1430 aa		13.41	□□□□□ -0.26
PRKCB-208	ENST00000487674	ARHGAP31	Q2M1Z3	1444 aa		13.4	□□□□□ -0.26
PRKCB-208	ENST00000487674	SYNM	O15061	1565 aa		13.39	□□□□□ -0.27
PRKCB-208	ENST00000487674	CFAP65	Q6ZU64	1925 aa	Known RBP	13.38	□□□□□ -0.27
PRKCB-208	ENST00000487674	SCAF11	Q99590	1463 aa	Known RBP	13.37	□□□□□ -0.27
PRKCB-208	ENST00000487674	SLIT1	O75093	1534 aa		13.37	□□□□□ -0.27
PRKCB-208	ENST00000487674	ARHGAP23	Q9P227	1491 aa		13.36	□□□□□ -0.27
PRKCB-208	ENST00000487674	STRCP1	A6NGW2	1772 aa		13.36	□□□□□ -0.27
PRKCB-208	ENST00000487674	LMTK2	Q8IWU2	1503 aa		13.36	□□□□□ -0.27
PRKCB-208	ENST00000487674	SOCS7	O14512	581 aa		13.36	□□□□□ -0.27
PRKCB-208	ENST00000487674	ILDR2	Q71H61	639 aa		13.36	□□□□□ -0.27
PRKCB-208	ENST00000487674	RRP7BP	Q9NSQ0	103 aa		13.36	□□□□□ -0.27
PRKCB-208	ENST00000487674	KANK1	Q14678	1352 aa		13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms