RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CCDC144AA2RUR9 1427 aa20.56■□□□□ 0.88
COL7A1-210ENST00000487017 EXOC6Q8TAG9 804 aa20.56■□□□□ 0.88
COL7A1-210ENST00000487017 HTATSF1O43719 755 aaKnown RBP20.55■□□□□ 0.88
COL7A1-210ENST00000487017 USP47Q96K76 1375 aa20.55■□□□□ 0.88
COL7A1-210ENST00000487017 FANCIQ9NVI1 1328 aa20.55■□□□□ 0.88
COL7A1-210ENST00000487017 GNL2Q13823 731 aaKnown RBP20.55■□□□□ 0.88
COL7A1-210ENST00000487017 CHMP4AQ9BY43 222 aa20.54■□□□□ 0.88
COL7A1-210ENST00000487017 ATAD2BQ9ULI0 1458 aa20.54■□□□□ 0.88
COL7A1-210ENST00000487017 LMOD3Q0VAK6 560 aa20.53■□□□□ 0.88
COL7A1-210ENST00000487017 PLIN1O60240 522 aa20.52■□□□□ 0.88
COL7A1-210ENST00000487017 TRIM6-TRIM34B2RNG4 842 aa20.52■□□□□ 0.88
COL7A1-210ENST00000487017 CRBNQ96SW2 442 aa20.51■□□□□ 0.87
COL7A1-210ENST00000487017 FOXD4L1Q9NU39 408 aa20.51■□□□□ 0.87
COL7A1-210ENST00000487017 E9PSI1 815 aa20.51■□□□□ 0.87
COL7A1-210ENST00000487017 ARID3AQ99856 593 aa20.5■□□□□ 0.87
COL7A1-210ENST00000487017 DDX11L8A8MPP1 907 aa20.5■□□□□ 0.87
COL7A1-210ENST00000487017 PAK3O75914 559 aaPredicted RBP20.49■□□□□ 0.87
COL7A1-210ENST00000487017 GPATCH3Q96I76 525 aa20.49■□□□□ 0.87
COL7A1-210ENST00000487017 RRP7AQ9Y3A4 280 aaKnown RBP20.49■□□□□ 0.87
COL7A1-210ENST00000487017 ST18O60284 1047 aa20.48■□□□□ 0.87
COL7A1-210ENST00000487017 CSPP1Q1MSJ5 1256 aa20.47■□□□□ 0.87
COL7A1-210ENST00000487017 SLC4A10Q6U841 1118 aa20.47■□□□□ 0.87
COL7A1-210ENST00000487017 HDAC5Q9UQL6 1122 aa20.47■□□□□ 0.87
COL7A1-210ENST00000487017 GSE1Q14687 1217 aa20.46■□□□□ 0.87
COL7A1-210ENST00000487017 CGNL1Q0VF96 1302 aa20.46■□□□□ 0.87
COL7A1-210ENST00000487017 SLC4A3P48751 1232 aa20.46■□□□□ 0.87
COL7A1-210ENST00000487017 TRAK1Q9UPV9 953 aa20.46■□□□□ 0.87
COL7A1-210ENST00000487017 UACAQ9BZF9 1416 aa20.45■□□□□ 0.86
COL7A1-210ENST00000487017 ZNF330Q9Y3S2 320 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-210ENST00000487017 NUTM2DQ5VT03 806 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-210ENST00000487017 ZKSCAN2Q63HK3 967 aa20.44■□□□□ 0.86
COL7A1-210ENST00000487017 WASHC2CQ9Y4E1 1318 aa20.44■□□□□ 0.86
COL7A1-210ENST00000487017 NOL8Q76FK4 1167 aaKnown RBP20.43■□□□□ 0.86
COL7A1-210ENST00000487017 JPH4Q96JJ6 628 aa20.42■□□□□ 0.86
COL7A1-210ENST00000487017 PHF14O94880 888 aa20.42■□□□□ 0.86
COL7A1-210ENST00000487017 BCL2L13Q9BXK5 485 aa20.42■□□□□ 0.86
COL7A1-210ENST00000487017 TPM4P67936 248 aa20.42■□□□□ 0.86
COL7A1-210ENST00000487017 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.41■□□□□ 0.86
COL7A1-210ENST00000487017 HSP90B1P14625 803 aaKnown RBP20.4■□□□□ 0.86
COL7A1-210ENST00000487017 COG6Q9Y2V7 657 aa20.4■□□□□ 0.86
COL7A1-210ENST00000487017 CCDC7Q96M83 1385 aa20.39■□□□□ 0.86
COL7A1-210ENST00000487017 ANKRD45Q5TZF3 282 aa20.38■□□□□ 0.85
COL7A1-210ENST00000487017 CSB-PGBD3P0DP91 1061 aa20.38■□□□□ 0.85
COL7A1-210ENST00000487017 SKOR2Q2VWA4 1001 aaPredicted RBP20.38■□□□□ 0.85
COL7A1-210ENST00000487017 FGD6Q6ZV73 1430 aa20.38■□□□□ 0.85
COL7A1-210ENST00000487017 KIF21BO75037 1637 aa20.38■□□□□ 0.85
COL7A1-210ENST00000487017 APAF1O14727 1248 aa20.37■□□□□ 0.85
COL7A1-210ENST00000487017 CNTLNQ9NXG0 1405 aa20.37■□□□□ 0.85
COL7A1-210ENST00000487017 FANCD2Q9BXW9 1451 aa20.36■□□□□ 0.85
COL7A1-210ENST00000487017 GORABQ5T7V8 394 aa20.36■□□□□ 0.85
COL7A1-210ENST00000487017 KIF16BQ96L93 1317 aa20.36■□□□□ 0.85
COL7A1-210ENST00000487017 NGEFQ8N5V2 710 aa20.36■□□□□ 0.85
COL7A1-210ENST00000487017 CUX1P39880 1505 aa20.35■□□□□ 0.85
COL7A1-210ENST00000487017 RSPH6AQ9H0K4 717 aa20.35■□□□□ 0.85
COL7A1-210ENST00000487017 KIF7Q2M1P5 1343 aa20.35■□□□□ 0.85
COL7A1-210ENST00000487017 AMPHP49418 695 aa20.35■□□□□ 0.85
COL7A1-210ENST00000487017 DDX49Q9Y6V7 483 aaKnown RBP20.35■□□□□ 0.85
COL7A1-210ENST00000487017 NOC3LQ8WTT2 800 aaKnown RBP20.34■□□□□ 0.85
COL7A1-210ENST00000487017 EVC2Q86UK5 1308 aa20.34■□□□□ 0.85
COL7A1-210ENST00000487017 FOXD4L5Q5VV16 416 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-210ENST00000487017 FOXD4L4Q8WXT5 416 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-210ENST00000487017 CHMP3Q9Y3E7 222 aa20.34■□□□□ 0.85
COL7A1-210ENST00000487017 MYOM3Q5VTT5 1437 aa20.34■□□□□ 0.85
COL7A1-210ENST00000487017 PDE4CQ08493 712 aa20.33■□□□□ 0.85
COL7A1-210ENST00000487017 NGDNQ8NEJ9 315 aaKnown RBP20.33■□□□□ 0.85
COL7A1-210ENST00000487017 TRHP20396 242 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-210ENST00000487017 ELL2O00472 640 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-210ENST00000487017 IGF1RP08069 1367 aa20.32■□□□□ 0.84
COL7A1-210ENST00000487017 DDX19BQ9UMR2 479 aa20.32■□□□□ 0.84
COL7A1-210ENST00000487017 CCDC34Q96HJ3 373 aa20.31■□□□□ 0.84
COL7A1-210ENST00000487017 LRRC9Q6ZRR7 1453 aa20.31■□□□□ 0.84
COL7A1-210ENST00000487017 RILPL2Q969X0 211 aa20.29■□□□□ 0.84
COL7A1-210ENST00000487017 VGFO15240 615 aaPredicted RBP20.29■□□□□ 0.84
COL7A1-210ENST00000487017 TAF7LQ5H9L4 462 aa20.28■□□□□ 0.84
COL7A1-210ENST00000487017 KIF3AQ9Y496 699 aa20.28■□□□□ 0.84
COL7A1-210ENST00000487017 EID1Q9Y6B2 187 aa20.28■□□□□ 0.84
COL7A1-210ENST00000487017 DZIP1LQ8IYY4 767 aaKnown RBP20.27■□□□□ 0.84
COL7A1-210ENST00000487017 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
COL7A1-210ENST00000487017 HSP90AA2PQ14568 343 aaPredicted RBP20.27■□□□□ 0.84
COL7A1-210ENST00000487017 COG3Q96JB2 828 aa20.27■□□□□ 0.83
COL7A1-210ENST00000487017 ATP6V1DQ9Y5K8 247 aa20.26■□□□□ 0.83
COL7A1-210ENST00000487017 LTV1Q96GA3 475 aaPredicted RBP20.25■□□□□ 0.83
COL7A1-210ENST00000487017 CHMP5Q9NZZ3 219 aa20.25■□□□□ 0.83
COL7A1-210ENST00000487017 PTPRGP23470 1445 aa20.24■□□□□ 0.83
COL7A1-210ENST00000487017 MIA2Q96PC5 1412 aa20.24■□□□□ 0.83
COL7A1-210ENST00000487017 WASHC2AQ641Q2 1341 aa20.24■□□□□ 0.83
COL7A1-210ENST00000487017 CREBRFQ8IUR6 639 aa20.23■□□□□ 0.83
COL7A1-210ENST00000487017 RUNDC1Q96C34 613 aa20.23■□□□□ 0.83
COL7A1-210ENST00000487017 PRM3Q9NNZ6 103 aa20.23■□□□□ 0.83
COL7A1-210ENST00000487017 REC8O95072 547 aa20.23■□□□□ 0.83
COL7A1-210ENST00000487017 NUTM2FA1L443 756 aa20.22■□□□□ 0.83
COL7A1-210ENST00000487017 DIAPH1O60610 1272 aaKnown RBP20.22■□□□□ 0.83
COL7A1-210ENST00000487017 BRD4O60885 1362 aaPredicted RBP20.22■□□□□ 0.83
COL7A1-210ENST00000487017 SF3A1Q15459 793 aaKnown RBP20.21■□□□□ 0.83
COL7A1-210ENST00000487017 GAPVD1Q14C86 1478 aa20.21■□□□□ 0.83
COL7A1-210ENST00000487017 API5Q9BZZ5 524 aaKnown RBP20.21■□□□□ 0.83
COL7A1-210ENST00000487017 H3BQV1 296 aa20.2■□□□□ 0.82
COL7A1-210ENST00000487017 IFFO2Q5TF58 517 aa20.2■□□□□ 0.82
COL7A1-210ENST00000487017 RIPK4P57078 832 aa20.2■□□□□ 0.82
COL7A1-210ENST00000487017 AAMPQ13685 434 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms