RNA–Protein interactions for RNA: ENST00000486901.1

HSPG2-211, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 2

Gene HSPG2, Length 3,586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-211ENST00000486901 NEUROD2Q15784 382 aa16.25■□□□□ 0.19
HSPG2-211ENST00000486901 SPRYD3Q8NCJ5 442 aa16.25■□□□□ 0.19
HSPG2-211ENST00000486901 GSE1Q14687 1217 aa16.24■□□□□ 0.19
HSPG2-211ENST00000486901 LRPPRCP42704 1394 aaKnown RBP16.23■□□□□ 0.19
HSPG2-211ENST00000486901 ROCK1Q13464 1354 aa16.23■□□□□ 0.19
HSPG2-211ENST00000486901 SLKQ9H2G2 1235 aaPredicted RBP16.23■□□□□ 0.19
HSPG2-211ENST00000486901 PLB1Q6P1J6 1458 aa16.23■□□□□ 0.19
HSPG2-211ENST00000486901 ANKRD30AQ9BXX3 1397 aa16.22■□□□□ 0.19
HSPG2-211ENST00000486901 ABCA5Q8WWZ7 1642 aa16.22■□□□□ 0.19
HSPG2-211ENST00000486901 PLEKHD1A6NEE1 506 aa16.22■□□□□ 0.19
HSPG2-211ENST00000486901 WDR43Q15061 677 aaKnown RBP eCLIP16.22■□□□□ 0.19
HSPG2-211ENST00000486901 CAMSAP2Q08AD1 1489 aa16.21■□□□□ 0.19
HSPG2-211ENST00000486901 BCAR3O75815 825 aa16.21■□□□□ 0.18
HSPG2-211ENST00000486901 TNNT2P45379 298 aaPredicted RBP16.21■□□□□ 0.18
HSPG2-211ENST00000486901 PER1O15534 1290 aaPredicted RBP16.2■□□□□ 0.18
HSPG2-211ENST00000486901 DISP3Q9P2K9 1392 aa16.2■□□□□ 0.18
HSPG2-211ENST00000486901 NUP153P49790 1475 aaKnown RBP16.2■□□□□ 0.18
HSPG2-211ENST00000486901 IQGAP2Q13576 1575 aa16.2■□□□□ 0.18
HSPG2-211ENST00000486901 ZNF608Q9ULD9 1512 aaPredicted RBP16.19■□□□□ 0.18
HSPG2-211ENST00000486901 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
HSPG2-211ENST00000486901 MS4A1P11836 297 aa16.18■□□□□ 0.18
HSPG2-211ENST00000486901 WDR62O43379 1518 aa16.18■□□□□ 0.18
HSPG2-211ENST00000486901 DDRGK1Q96HY6 314 aa16.16■□□□□ 0.18
HSPG2-211ENST00000486901 KDM5CP41229 1560 aa16.15■□□□□ 0.18
HSPG2-211ENST00000486901 BCL2L13Q9BXK5 485 aa16.15■□□□□ 0.18
HSPG2-211ENST00000486901 APAF1O14727 1248 aa16.15■□□□□ 0.18
HSPG2-211ENST00000486901 KNSTRNQ9Y448 316 aa16.15■□□□□ 0.18
HSPG2-211ENST00000486901 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
HSPG2-211ENST00000486901 PDE3BQ13370 1112 aa16.15■□□□□ 0.18
HSPG2-211ENST00000486901 KIAA0586Q9BVV6 1533 aa16.14■□□□□ 0.17
HSPG2-211ENST00000486901 SEC24BO95487 1268 aa16.14■□□□□ 0.17
HSPG2-211ENST00000486901 RRP7AQ9Y3A4 280 aaKnown RBP16.14■□□□□ 0.17
HSPG2-211ENST00000486901 PLEKHH1Q9ULM0 1364 aa16.14■□□□□ 0.17
HSPG2-211ENST00000486901 C8orf34Q49A92 452 aa16.13■□□□□ 0.17
HSPG2-211ENST00000486901 DMRT2Q9Y5R5 561 aa16.13■□□□□ 0.17
HSPG2-211ENST00000486901 GPATCH8Q9UKJ3 1502 aaKnown RBP16.13■□□□□ 0.17
HSPG2-211ENST00000486901 DNMT1P26358 1616 aaKnown RBP16.13■□□□□ 0.17
HSPG2-211ENST00000486901 USP35Q9P2H5 1018 aa16.13■□□□□ 0.17
HSPG2-211ENST00000486901 MBD5Q9P267 1494 aa16.13■□□□□ 0.17
HSPG2-211ENST00000486901 KIF21AQ7Z4S6 1674 aa16.13■□□□□ 0.17
HSPG2-211ENST00000486901 ARID4BQ4LE39 1312 aaPredicted RBP16.12■□□□□ 0.17
HSPG2-211ENST00000486901 FAM161AQ3B820 660 aa16.12■□□□□ 0.17
HSPG2-211ENST00000486901 PANK1Q8TE04 598 aa16.12■□□□□ 0.17
HSPG2-211ENST00000486901 DUSP27Q5VZP5 1158 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 POGKQ9P215 609 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 COG6Q9Y2V7 657 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 TMF1P82094 1093 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 JPH4Q96JJ6 628 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 PARD3Q8TEW0 1356 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 IGHDP01880 384 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 GOLGA2Q08379 1002 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 CLUAP1Q96AJ1 413 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 TESK2Q96S53 571 aa16.11■□□□□ 0.17
HSPG2-211ENST00000486901 GZF1Q9H116 711 aaPredicted RBP16.11■□□□□ 0.17
HSPG2-211ENST00000486901 TROQ12816 1431 aaPredicted RBP16.1■□□□□ 0.17
HSPG2-211ENST00000486901 C9orf84Q5VXU9 1444 aa16.1■□□□□ 0.17
HSPG2-211ENST00000486901 PPP2R1AP30153 589 aa16.1■□□□□ 0.17
HSPG2-211ENST00000486901 RALGAPBQ86X10 1494 aa16.09■□□□□ 0.17
HSPG2-211ENST00000486901 WASHC2CQ9Y4E1 1318 aa16.09■□□□□ 0.17
HSPG2-211ENST00000486901 KIF14Q15058 1648 aa16.09■□□□□ 0.17
HSPG2-211ENST00000486901 TNNQ9UQP3 1299 aa16.08■□□□□ 0.17
HSPG2-211ENST00000486901 TARBP1Q13395 1621 aaKnown RBP16.08■□□□□ 0.16
HSPG2-211ENST00000486901 CCDC144AA2RUR9 1427 aa16.08■□□□□ 0.16
HSPG2-211ENST00000486901 DISP1Q96F81 1524 aa16.08■□□□□ 0.16
HSPG2-211ENST00000486901 CENPQQ7L2Z9 268 aaPredicted RBP16.08■□□□□ 0.16
HSPG2-211ENST00000486901 KDM2BQ8NHM5 1336 aa16.06■□□□□ 0.16
HSPG2-211ENST00000486901 CHGAP10645 457 aaKnown RBP16.05■□□□□ 0.16
HSPG2-211ENST00000486901 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.02■□□□□ 0.15
HSPG2-211ENST00000486901 PBRM1Q86U86 1689 aa16.01■□□□□ 0.15
HSPG2-211ENST00000486901 PLPPR3Q6T4P5 718 aa16.01■□□□□ 0.15
HSPG2-211ENST00000486901 ERCC6Q03468 1493 aa16.01■□□□□ 0.15
HSPG2-211ENST00000486901 UHRF1BP1Q6BDS2 1440 aa16.01■□□□□ 0.15
HSPG2-211ENST00000486901 ERBINQ96RT1 1412 aa16■□□□□ 0.15
HSPG2-211ENST00000486901 POLR1AO95602 1720 aaPredicted RBP15.99■□□□□ 0.15
HSPG2-211ENST00000486901 PRAG1Q86YV5 1406 aa15.99■□□□□ 0.15
HSPG2-211ENST00000486901 SLFN5Q08AF3 891 aa15.99■□□□□ 0.15
HSPG2-211ENST00000486901 ADAMTS12P58397 1594 aa15.99■□□□□ 0.15
HSPG2-211ENST00000486901 RAPGEF6Q8TEU7 1601 aa15.98■□□□□ 0.15
HSPG2-211ENST00000486901 MRC2Q9UBG0 1479 aa15.98■□□□□ 0.15
HSPG2-211ENST00000486901 KIAA0556O60303 1618 aa15.97■□□□□ 0.15
HSPG2-211ENST00000486901 AMER1Q5JTC6 1135 aaPredicted RBP15.96■□□□□ 0.15
HSPG2-211ENST00000486901 MAGI2Q86UL8 1455 aa15.93■□□□□ 0.14
HSPG2-211ENST00000486901 A2MP01023 1474 aa15.93■□□□□ 0.14
HSPG2-211ENST00000486901 RLBP1P12271 317 aa15.92■□□□□ 0.14
HSPG2-211ENST00000486901 NUTM2DQ5VT03 806 aaPredicted RBP15.92■□□□□ 0.14
HSPG2-211ENST00000486901 PANK2Q9BZ23 570 aa15.92■□□□□ 0.14
HSPG2-211ENST00000486901 USP19O94966 1318 aa15.92■□□□□ 0.14
HSPG2-211ENST00000486901 BLMP54132 1417 aaPredicted RBP15.92■□□□□ 0.14
HSPG2-211ENST00000486901 CFAP70Q5T0N1 1121 aa15.91■□□□□ 0.14
HSPG2-211ENST00000486901 CENPJQ9HC77 1338 aaPredicted RBP15.91■□□□□ 0.14
HSPG2-211ENST00000486901 RRAGDQ9NQL2 400 aaPredicted RBP15.91■□□□□ 0.14
HSPG2-211ENST00000486901 PCDHB15Q9Y5E8 787 aa15.91■□□□□ 0.14
HSPG2-211ENST00000486901 GRIN2AQ12879 1464 aa15.9■□□□□ 0.14
HSPG2-211ENST00000486901 PLEKHH2Q8IVE3 1493 aa15.9■□□□□ 0.14
HSPG2-211ENST00000486901 MFAP1P55081 439 aaKnown RBP15.9■□□□□ 0.14
HSPG2-211ENST00000486901 PLA2R1Q13018 1463 aa15.9■□□□□ 0.14
HSPG2-211ENST00000486901 FOXD4L1Q9NU39 408 aa15.9■□□□□ 0.14
HSPG2-211ENST00000486901 SAFB2Q14151 953 aaKnown RBP eCLIP15.89■□□□□ 0.13
HSPG2-211ENST00000486901 FAM135AQ9P2D6 1515 aa15.89■□□□□ 0.13
HSPG2-211ENST00000486901 IFT140Q96RY7 1462 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms