RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 C14orf37Q86TY3 774 aa17.34■□□□□ 0.37
HMGN1-216ENST00000486741 MYBBP1AQ9BQG0 1328 aaKnown RBP17.33■□□□□ 0.37
HMGN1-216ENST00000486741 ANP32EQ9BTT0 268 aa17.33■□□□□ 0.37
HMGN1-216ENST00000486741 ZBTB7CA1YPR0 619 aa17.33■□□□□ 0.36
HMGN1-216ENST00000486741 KIF21AQ7Z4S6 1674 aa17.32■□□□□ 0.36
HMGN1-216ENST00000486741 CAMSAP2Q08AD1 1489 aa17.31■□□□□ 0.36
HMGN1-216ENST00000486741 EIF5BO60841 1220 aaKnown RBP17.31■□□□□ 0.36
HMGN1-216ENST00000486741 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
HMGN1-216ENST00000486741 NCOA1Q15788 1441 aa17.3■□□□□ 0.36
HMGN1-216ENST00000486741 PLIN1O60240 522 aa17.3■□□□□ 0.36
HMGN1-216ENST00000486741 ZBED9Q6R2W3 1325 aa17.29■□□□□ 0.36
HMGN1-216ENST00000486741 ROCK1Q13464 1354 aa17.29■□□□□ 0.36
HMGN1-216ENST00000486741 CFAP70Q5T0N1 1121 aa17.29■□□□□ 0.36
HMGN1-216ENST00000486741 TMEM132EQ6IEE7 984 aa17.29■□□□□ 0.36
HMGN1-216ENST00000486741 NUP153P49790 1475 aaKnown RBP17.28■□□□□ 0.36
HMGN1-216ENST00000486741 TRHP20396 242 aaPredicted RBP17.28■□□□□ 0.36
HMGN1-216ENST00000486741 U2AF1L5P0DN76 240 aaPredicted RBP17.27■□□□□ 0.35
HMGN1-216ENST00000486741 U2AF1Q01081 240 aaKnown RBP eCLIP17.27■□□□□ 0.354e-7■■■■■ 29.1
HMGN1-216ENST00000486741 MAPK8IP3Q9UPT6 1336 aa17.27■□□□□ 0.35
HMGN1-216ENST00000486741 SCAPERQ9BY12 1400 aa17.27■□□□□ 0.35
HMGN1-216ENST00000486741 RRP7AQ9Y3A4 280 aaKnown RBP17.26■□□□□ 0.35
HMGN1-216ENST00000486741 AKNAQ7Z591 1439 aa17.25■□□□□ 0.35
HMGN1-216ENST00000486741 NUTM2FA1L443 756 aa17.25■□□□□ 0.35
HMGN1-216ENST00000486741 CTTNBP2Q8WZ74 1663 aa17.25■□□□□ 0.35
HMGN1-216ENST00000486741 UGGT2Q9NYU1 1516 aa17.25■□□□□ 0.35
HMGN1-216ENST00000486741 GPATCH8Q9UKJ3 1502 aaKnown RBP17.24■□□□□ 0.35
HMGN1-216ENST00000486741 RAPGEF3O95398 923 aa17.24■□□□□ 0.35
HMGN1-216ENST00000486741 EIF3AQ14152 1382 aaKnown RBP17.22■□□□□ 0.35
HMGN1-216ENST00000486741 FAM69CQ0P6D2 419 aa17.21■□□□□ 0.35
HMGN1-216ENST00000486741 FTSJ3Q8IY81 847 aaKnown RBP17.21■□□□□ 0.35
HMGN1-216ENST00000486741 ATP10BO94823 1461 aa17.2■□□□□ 0.34
HMGN1-216ENST00000486741 EXOC6Q8TAG9 804 aa17.2■□□□□ 0.34
HMGN1-216ENST00000486741 MINK1Q8N4C8 1332 aaPredicted RBP17.19■□□□□ 0.34
HMGN1-216ENST00000486741 GOLGA2Q08379 1002 aa17.19■□□□□ 0.34
HMGN1-216ENST00000486741 CDCA7LQ96GN5 454 aa17.19■□□□□ 0.34
HMGN1-216ENST00000486741 APAF1O14727 1248 aa17.19■□□□□ 0.34
HMGN1-216ENST00000486741 ADAMTS12P58397 1594 aa17.19■□□□□ 0.34
HMGN1-216ENST00000486741 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.19■□□□□ 0.34
HMGN1-216ENST00000486741 UPF2Q9HAU5 1272 aaKnown RBP17.18■□□□□ 0.34
HMGN1-216ENST00000486741 CLUAP1Q96AJ1 413 aa17.16■□□□□ 0.34
HMGN1-216ENST00000486741 CFAP43Q8NDM7 1665 aa17.16■□□□□ 0.34
HMGN1-216ENST00000486741 ERICH6BQ5W0A0 696 aa17.16■□□□□ 0.34
HMGN1-216ENST00000486741 LMOD2Q6P5Q4 547 aa17.16■□□□□ 0.34
HMGN1-216ENST00000486741 ABCA5Q8WWZ7 1642 aa17.15■□□□□ 0.34
HMGN1-216ENST00000486741 RPRD2Q5VT52 1461 aaKnown RBP17.15■□□□□ 0.34
HMGN1-216ENST00000486741 VGFO15240 615 aaPredicted RBP17.15■□□□□ 0.34
HMGN1-216ENST00000486741 ADAMTS8Q9UP79 889 aa17.15■□□□□ 0.34
HMGN1-216ENST00000486741 CCDC141Q6ZP82 1450 aa17.15■□□□□ 0.34
HMGN1-216ENST00000486741 RAPGEF6Q8TEU7 1601 aa17.14■□□□□ 0.33
HMGN1-216ENST00000486741 HDGFL2Q7Z4V5 671 aaPredicted RBP17.14■□□□□ 0.33
HMGN1-216ENST00000486741 PNISRQ8TF01 805 aaKnown RBP17.14■□□□□ 0.33
HMGN1-216ENST00000486741 BCL2L13Q9BXK5 485 aa17.14■□□□□ 0.33
HMGN1-216ENST00000486741 DISP1Q96F81 1524 aa17.14■□□□□ 0.33
HMGN1-216ENST00000486741 MAGI3Q5TCQ9 1506 aa17.13■□□□□ 0.33
HMGN1-216ENST00000486741 WDR62O43379 1518 aa17.13■□□□□ 0.33
HMGN1-216ENST00000486741 PLEKHH2Q8IVE3 1493 aa17.12■□□□□ 0.33
HMGN1-216ENST00000486741 CENPJQ9HC77 1338 aaPredicted RBP17.12■□□□□ 0.33
HMGN1-216ENST00000486741 KIAA0556O60303 1618 aa17.11■□□□□ 0.33
HMGN1-216ENST00000486741 RRP1P56182 461 aaKnown RBP17.11■□□□□ 0.33
HMGN1-216ENST00000486741 PDE3BQ13370 1112 aa17.11■□□□□ 0.33
HMGN1-216ENST00000486741 ARXQ96QS3 562 aa17.1■□□□□ 0.33
HMGN1-216ENST00000486741 CABP2Q9NPB3 220 aa17.1■□□□□ 0.33
HMGN1-216ENST00000486741 KIF14Q15058 1648 aa17.1■□□□□ 0.33
HMGN1-216ENST00000486741 EIF4G3O43432 1585 aaKnown RBP17.1■□□□□ 0.33
HMGN1-216ENST00000486741 HSP90AA1P07900 732 aaKnown RBP17.1■□□□□ 0.33
HMGN1-216ENST00000486741 SLC12A5Q9H2X9 1139 aa17.09■□□□□ 0.33
HMGN1-216ENST00000486741 CRBNQ96SW2 442 aa17.08■□□□□ 0.33
HMGN1-216ENST00000486741 NOP58Q9Y2X3 529 aaKnown RBP17.08■□□□□ 0.33
HMGN1-216ENST00000486741 TERF2IPQ9NYB0 399 aa17.08■□□□□ 0.32
HMGN1-216ENST00000486741 TARBP1Q13395 1621 aaKnown RBP17.06■□□□□ 0.32
HMGN1-216ENST00000486741 HDGFP51858 240 aaKnown RBP17.06■□□□□ 0.32
HMGN1-216ENST00000486741 EVC2Q86UK5 1308 aa17.06■□□□□ 0.32
HMGN1-216ENST00000486741 PPP2R1AP30153 589 aa17.05■□□□□ 0.32
HMGN1-216ENST00000486741 GGNBP2Q9H3C7 697 aa17.05■□□□□ 0.32
HMGN1-216ENST00000486741 TCOF1Q13428 1488 aaKnown RBP17.05■□□□□ 0.32
HMGN1-216ENST00000486741 BRD4O60885 1362 aaPredicted RBP17.04■□□□□ 0.32
HMGN1-216ENST00000486741 SAMD9Q5K651 1589 aa17.04■□□□□ 0.32
HMGN1-216ENST00000486741 MYH16Q9H6N6 1097 aa17.04■□□□□ 0.32
HMGN1-216ENST00000486741 CGNL1Q0VF96 1302 aa17.03■□□□□ 0.32
HMGN1-216ENST00000486741 PBRM1Q86U86 1689 aa17.03■□□□□ 0.32
HMGN1-216ENST00000486741 ELL2O00472 640 aaPredicted RBP17.02■□□□□ 0.32
HMGN1-216ENST00000486741 PAK3O75914 559 aaPredicted RBP17.02■□□□□ 0.31
HMGN1-216ENST00000486741 ERBINQ96RT1 1412 aa17■□□□□ 0.31
HMGN1-216ENST00000486741 MTHFSP49914 203 aa17■□□□□ 0.31
HMGN1-216ENST00000486741 ADGRF5Q8IZF2 1346 aa17■□□□□ 0.31
HMGN1-216ENST00000486741 SMC4Q9NTJ3 1288 aa16.99■□□□□ 0.31
HMGN1-216ENST00000486741 COG6Q9Y2V7 657 aa16.99■□□□□ 0.31
HMGN1-216ENST00000486741 ITPRIPQ8IWB1 547 aa16.98■□□□□ 0.31
HMGN1-216ENST00000486741 NUP160Q12769 1436 aa16.98■□□□□ 0.31
HMGN1-216ENST00000486741 STAC3Q96MF2 364 aa16.98■□□□□ 0.31
HMGN1-216ENST00000486741 DDRGK1Q96HY6 314 aa16.97■□□□□ 0.31
HMGN1-216ENST00000486741 TCERG1O14776 1098 aaKnown RBP16.97■□□□□ 0.31
HMGN1-216ENST00000486741 PNNQ9H307 717 aaKnown RBP16.96■□□□□ 0.31
HMGN1-216ENST00000486741 SYCP2Q9BX26 1530 aa16.96■□□□□ 0.31
HMGN1-216ENST00000486741 APBB1O00213 710 aa16.96■□□□□ 0.3
HMGN1-216ENST00000486741 PRAM1Q96QH2 718 aa16.95■□□□□ 0.3
HMGN1-216ENST00000486741 ADGRL1O94910 1474 aa16.95■□□□□ 0.3
HMGN1-216ENST00000486741 TRAPPC8Q9Y2L5 1435 aa16.95■□□□□ 0.3
HMGN1-216ENST00000486741 E9PSI1 815 aa16.94■□□□□ 0.3
HMGN1-216ENST00000486741 CD109Q6YHK3 1445 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms