RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 PTPRKQ15262 1439 aa24.37■■□□□ 1.49
UPF3A-208ENST00000484246 RNF17Q9BXT8 1623 aaKnown RBP24.37■■□□□ 1.49
UPF3A-208ENST00000484246 ROCK1Q13464 1354 aa24.36■■□□□ 1.49
UPF3A-208ENST00000484246 KIF3BO15066 747 aa24.35■■□□□ 1.49
UPF3A-208ENST00000484246 MROH2AA6NES4 1674 aa24.34■■□□□ 1.49
UPF3A-208ENST00000484246 GGT6Q6P531 493 aa24.32■■□□□ 1.48
UPF3A-208ENST00000484246 ESF1Q9H501 851 aaKnown RBP24.32■■□□□ 1.48
UPF3A-208ENST00000484246 KDM5DQ9BY66 1539 aa24.31■■□□□ 1.48
UPF3A-208ENST00000484246 RRP7BPQ9NSQ0 103 aa24.31■■□□□ 1.48
UPF3A-208ENST00000484246 CHIC2Q9UKJ5 165 aa24.3■■□□□ 1.48
UPF3A-208ENST00000484246 MROH1Q8NDA8 1641 aa24.3■■□□□ 1.48
UPF3A-208ENST00000484246 PRDM15P57071 1507 aaPredicted RBP24.29■■□□□ 1.48
UPF3A-208ENST00000484246 ZMYM3Q14202 1370 aa24.28■■□□□ 1.48
UPF3A-208ENST00000484246 NPATQ14207 1427 aa24.27■■□□□ 1.48
UPF3A-208ENST00000484246 DEPDC5O75140 1603 aa24.26■■□□□ 1.47
UPF3A-208ENST00000484246 C3P01024 1663 aa24.26■■□□□ 1.47
UPF3A-208ENST00000484246 ANKRD50Q9ULJ7 1429 aa24.26■■□□□ 1.47
UPF3A-208ENST00000484246 ABCC3O15438 1527 aa24.25■■□□□ 1.47
UPF3A-208ENST00000484246 CLTCQ00610 1675 aaKnown RBP24.24■■□□□ 1.47
UPF3A-208ENST00000484246 ZC3H13Q5T200 1668 aaKnown RBP24.24■■□□□ 1.47
UPF3A-208ENST00000484246 LMTK3Q96Q04 1460 aa24.23■■□□□ 1.47
UPF3A-208ENST00000484246 CEBPAP49715 358 aaPredicted RBP24.22■■□□□ 1.47
UPF3A-208ENST00000484246 PZPP20742 1482 aa24.2■■□□□ 1.47
UPF3A-208ENST00000484246 WASHC2CQ9Y4E1 1318 aa24.2■■□□□ 1.46
UPF3A-208ENST00000484246 VWDEQ8N2E2 1590 aa24.2■■□□□ 1.46
UPF3A-208ENST00000484246 LMTK2Q8IWU2 1503 aa24.18■■□□□ 1.46
UPF3A-208ENST00000484246 ARHGAP31Q2M1Z3 1444 aa24.15■■□□□ 1.46
UPF3A-208ENST00000484246 UHRF1BP1Q6BDS2 1440 aa24.15■■□□□ 1.46
UPF3A-208ENST00000484246 PREX1Q8TCU6 1659 aa24.15■■□□□ 1.46
UPF3A-208ENST00000484246 ITGAEP38570 1179 aa24.14■■□□□ 1.45
UPF3A-208ENST00000484246 KANK1Q14678 1352 aa24.14■■□□□ 1.45
UPF3A-208ENST00000484246 UNC13BO14795 1591 aa24.12■■□□□ 1.45
UPF3A-208ENST00000484246 HFM1A2PYH4 1435 aa24.11■■□□□ 1.45
UPF3A-208ENST00000484246 NAIPQ13075 1403 aa24.1■■□□□ 1.45
UPF3A-208ENST00000484246 CAMSAP1Q5T5Y3 1602 aa24.1■■□□□ 1.45
UPF3A-208ENST00000484246 SPATA31D1Q6ZQQ2 1576 aa24.08■■□□□ 1.45
UPF3A-208ENST00000484246 SETD1BQ9UPS6 1966 aaKnown RBP24.08■■□□□ 1.45
UPF3A-208ENST00000484246 CEP152O94986 1710 aa24.07■■□□□ 1.44
UPF3A-208ENST00000484246 ERVK-7P63135 1459 aa24.07■■□□□ 1.44
UPF3A-208ENST00000484246 TNRQ92752 1358 aa24.06■■□□□ 1.44
UPF3A-208ENST00000484246 GCC2Q8IWJ2 1684 aa24.06■■□□□ 1.44
UPF3A-208ENST00000484246 MYO3AQ8NEV4 1616 aa24.06■■□□□ 1.44
UPF3A-208ENST00000484246 EFCAB6Q5THR3 1501 aa24.05■■□□□ 1.44
UPF3A-208ENST00000484246 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.04■■□□□ 1.441e-8■■■□□ 18.3
UPF3A-208ENST00000484246 ZNF142P52746 1687 aaPredicted RBP24.04■■□□□ 1.44
UPF3A-208ENST00000484246 RPRD2Q5VT52 1461 aaKnown RBP24.02■■□□□ 1.44
UPF3A-208ENST00000484246 NLRP1Q9C000 1473 aa24.02■■□□□ 1.44
UPF3A-208ENST00000484246 FBXO31Q5XUX0 539 aaPredicted RBP24.02■■□□□ 1.44
UPF3A-208ENST00000484246 CEP170BQ9Y4F5 1589 aaPredicted RBP24.01■■□□□ 1.43
UPF3A-208ENST00000484246 IQGAP3Q86VI3 1631 aa24.01■■□□□ 1.43
UPF3A-208ENST00000484246 A2ML1A8K2U0 1454 aa24■■□□□ 1.43
UPF3A-208ENST00000484246 TET3O43151 1660 aa23.99■■□□□ 1.43
UPF3A-208ENST00000484246 NOS1P29475 1434 aa23.97■■□□□ 1.43
UPF3A-208ENST00000484246 HSPA2P54652 639 aa23.97■■□□□ 1.43
UPF3A-208ENST00000484246 PLA2R1Q13018 1463 aa23.95■■□□□ 1.42
UPF3A-208ENST00000484246 NUP155O75694 1391 aa23.95■■□□□ 1.42
UPF3A-208ENST00000484246 SYNMO15061 1565 aa23.88■■□□□ 1.41
UPF3A-208ENST00000484246 ACIN1Q9UKV3 1341 aaKnown RBP23.87■■□□□ 1.41
UPF3A-208ENST00000484246 UGGT1Q9NYU2 1555 aa23.87■■□□□ 1.41
UPF3A-208ENST00000484246 FBXO41Q8TF61 875 aa23.85■■□□□ 1.41
UPF3A-208ENST00000484246 E9PCH4 1651 aa23.85■■□□□ 1.41
UPF3A-208ENST00000484246 SETD5Q9C0A6 1442 aa23.84■■□□□ 1.41
UPF3A-208ENST00000484246 SLC52A1Q9NWF4 448 aa23.83■■□□□ 1.41
UPF3A-208ENST00000484246 PTPRTO14522 1441 aa23.83■■□□□ 1.4
UPF3A-208ENST00000484246 STRCQ7RTU9 1775 aa23.83■■□□□ 1.4
UPF3A-208ENST00000484246 ADRA2BP18089 450 aa23.82■■□□□ 1.4
UPF3A-208ENST00000484246 THEMISQ8N1K5 641 aaPredicted RBP23.82■■□□□ 1.4
UPF3A-208ENST00000484246 KDM5AP29375 1690 aaKnown RBP23.82■■□□□ 1.4
UPF3A-208ENST00000484246 PKD2Q13563 968 aa23.81■■□□□ 1.4
UPF3A-208ENST00000484246 DMRT2Q9Y5R5 561 aa23.8■■□□□ 1.4
UPF3A-208ENST00000484246 PIK3C2BO00750 1634 aa23.79■■□□□ 1.4
UPF3A-208ENST00000484246 ARHGAP23Q9P227 1491 aa23.79■■□□□ 1.4
UPF3A-208ENST00000484246 UBR1Q8IWV7 1749 aa23.79■■□□□ 1.4
UPF3A-208ENST00000484246 ADGRB3O60242 1522 aa23.78■■□□□ 1.4
UPF3A-208ENST00000484246 IDI1Q13907 227 aa23.77■■□□□ 1.4
UPF3A-208ENST00000484246 SLIT1O75093 1534 aa23.77■■□□□ 1.4
UPF3A-208ENST00000484246 RAB3GAP2Q9H2M9 1393 aa23.76■■□□□ 1.39
UPF3A-208ENST00000484246 TRIM52Q96A61 297 aa23.74■■□□□ 1.39
UPF3A-208ENST00000484246 MED14O60244 1454 aa23.74■■□□□ 1.39
UPF3A-208ENST00000484246 NEURL4Q96JN8 1562 aa23.74■■□□□ 1.39
UPF3A-208ENST00000484246 HRCP23327 699 aa23.73■■□□□ 1.39
UPF3A-208ENST00000484246 TRPM2O94759 1503 aa23.73■■□□□ 1.39
UPF3A-208ENST00000484246 TMEM2Q9UHN6 1383 aa23.72■■□□□ 1.39
UPF3A-208ENST00000484246 NCKAP5LQ9HCH0 1330 aa23.71■■□□□ 1.39
UPF3A-208ENST00000484246 SLC4A1APQ9BWU0 796 aaKnown RBP23.71■■□□□ 1.39
UPF3A-208ENST00000484246 ANKLE2Q86XL3 938 aa23.7■■□□□ 1.38
UPF3A-208ENST00000484246 SPHKAPQ2M3C7 1700 aa23.7■■□□□ 1.38
UPF3A-208ENST00000484246 SCAF11Q99590 1463 aaKnown RBP23.69■■□□□ 1.38
UPF3A-208ENST00000484246 CFAP65Q6ZU64 1925 aaKnown RBP23.69■■□□□ 1.38
UPF3A-208ENST00000484246 POLR1AO95602 1720 aaPredicted RBP23.68■■□□□ 1.38
UPF3A-208ENST00000484246 TMEM131LA2VDJ0 1609 aa23.67■■□□□ 1.38
UPF3A-208ENST00000484246 MPHOSPH9Q99550 1183 aa23.65■■□□□ 1.38
UPF3A-208ENST00000484246 STAG3Q9UJ98 1225 aa23.65■■□□□ 1.38
UPF3A-208ENST00000484246 NPHP4O75161 1426 aaPredicted RBP23.65■■□□□ 1.38
UPF3A-208ENST00000484246 ZFYVE9O95405 1425 aa23.64■■□□□ 1.37
UPF3A-208ENST00000484246 LTKP29376 864 aa23.61■■□□□ 1.37
UPF3A-208ENST00000484246 CLTCL1P53675 1640 aa23.61■■□□□ 1.37
UPF3A-208ENST00000484246 EID1Q9Y6B2 187 aa23.6■■□□□ 1.37
UPF3A-208ENST00000484246 TXNDC2Q86VQ3 553 aa23.59■■□□□ 1.37
UPF3A-208ENST00000484246 IQGAP1P46940 1657 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms