RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 GNPATO15228 680 aa10.5□□□□□ -0.73
UPF3A-205ENST00000479712 C14orf37Q86TY3 774 aa10.5□□□□□ -0.73
UPF3A-205ENST00000479712 DAXXQ9UER7 740 aaPredicted RBP10.5□□□□□ -0.73
UPF3A-205ENST00000479712 SLC34A2O95436 690 aa10.49□□□□□ -0.73
UPF3A-205ENST00000479712 HIC1Q14526 733 aa10.49□□□□□ -0.73
UPF3A-205ENST00000479712 POTEB3A0JP26 581 aa10.48□□□□□ -0.73
UPF3A-205ENST00000479712 POTEBQ6S5H4 581 aa10.48□□□□□ -0.73
UPF3A-205ENST00000479712 CCDC102AQ96A19 550 aa10.48□□□□□ -0.73
UPF3A-205ENST00000479712 IRF6O14896 467 aa10.47□□□□□ -0.73
UPF3A-205ENST00000479712 PRIM1P49642 420 aaKnown RBP10.47□□□□□ -0.73
UPF3A-205ENST00000479712 EMP3P54852 163 aa10.47□□□□□ -0.73
UPF3A-205ENST00000479712 KRTAP3-3Q9BYR6 98 aa10.47□□□□□ -0.73
UPF3A-205ENST00000479712 KRTAP3-2Q9BYR7 98 aa10.47□□□□□ -0.73
UPF3A-205ENST00000479712 IL27Q8NEV9 243 aa10.46□□□□□ -0.73
UPF3A-205ENST00000479712 HS3ST6Q96QI5 342 aa10.45□□□□□ -0.74
UPF3A-205ENST00000479712 ANO8Q9HCE9 1232 aaPredicted RBP10.45□□□□□ -0.74
UPF3A-205ENST00000479712 FECHP22830 423 aa10.44□□□□□ -0.74
UPF3A-205ENST00000479712 PTGDRQ13258 359 aa10.44□□□□□ -0.74
UPF3A-205ENST00000479712 FAM205CA6NFA0 338 aa10.43□□□□□ -0.74
UPF3A-205ENST00000479712 PHF14O94880 888 aa10.42□□□□□ -0.74
UPF3A-205ENST00000479712 EPAS1Q99814 870 aa10.42□□□□□ -0.74
UPF3A-205ENST00000479712 EN1Q05925 392 aaPredicted RBP10.41□□□□□ -0.74
UPF3A-205ENST00000479712 AMHR2Q16671 573 aa10.41□□□□□ -0.74
UPF3A-205ENST00000479712 PCDHGA4Q9Y5G9 962 aa10.4□□□□□ -0.74
UPF3A-205ENST00000479712 MAP3K7O43318 606 aa10.39□□□□□ -0.75
UPF3A-205ENST00000479712 PARP9Q8IXQ6 854 aa10.38□□□□□ -0.75
UPF3A-205ENST00000479712 RBM33Q96EV2 1170 aaKnown RBP10.38□□□□□ -0.75
UPF3A-205ENST00000479712 CDHR5Q9HBB8 845 aa10.38□□□□□ -0.75
UPF3A-205ENST00000479712 FAM117AQ9C073 453 aa10.37□□□□□ -0.75
UPF3A-205ENST00000479712 TTLL12Q14166 644 aaPredicted RBP10.36□□□□□ -0.75
UPF3A-205ENST00000479712 TYW1BQ6NUM6 668 aa10.36□□□□□ -0.75
UPF3A-205ENST00000479712 PCDHGA10Q9Y5H3 936 aa10.36□□□□□ -0.75
UPF3A-205ENST00000479712 SHROOM4Q9ULL8 1493 aa10.36□□□□□ -0.75
UPF3A-205ENST00000479712 DDRGK1Q96HY6 314 aa10.35□□□□□ -0.75
UPF3A-205ENST00000479712 JPH4Q96JJ6 628 aa10.34□□□□□ -0.75
UPF3A-205ENST00000479712 NPDC1Q9NQX5 325 aaPredicted RBP10.34□□□□□ -0.75
UPF3A-205ENST00000479712 TSR1Q2NL82 804 aaKnown RBP10.33□□□□□ -0.76
UPF3A-205ENST00000479712 FBXW7Q969H0 707 aa10.33□□□□□ -0.76
UPF3A-205ENST00000479712 HOXB3P14651 431 aaPredicted RBP10.32□□□□□ -0.76
UPF3A-205ENST00000479712 PLEKHG3A1L390 1219 aa10.31□□□□□ -0.76
UPF3A-205ENST00000479712 RIMBP3CA6NJZ7 1639 aa10.31□□□□□ -0.76
UPF3A-205ENST00000479712 RIMBP3BA6NNM3 1639 aa10.31□□□□□ -0.76
UPF3A-205ENST00000479712 RIMBP3Q9UFD9 1639 aa10.31□□□□□ -0.76
UPF3A-205ENST00000479712 KDM4FA0A1W2PPD8 638 aa10.3□□□□□ -0.76
UPF3A-205ENST00000479712 FOSBP53539 338 aa10.29□□□□□ -0.76
UPF3A-205ENST00000479712 GIGYF2Q6Y7W6 1299 aaKnown RBP10.29□□□□□ -0.76
UPF3A-205ENST00000479712 THOC2Q8NI27 1593 aaKnown RBP10.28□□□□□ -0.76
UPF3A-205ENST00000479712 DOK7Q18PE1 504 aa10.28□□□□□ -0.76
UPF3A-205ENST00000479712 HOXB1P14653 301 aaPredicted RBP10.27□□□□□ -0.77
UPF3A-205ENST00000479712 ZNF454Q8N9F8 522 aa10.27□□□□□ -0.77
UPF3A-205ENST00000479712 NUDT7P0C024 238 aa10.26□□□□□ -0.77
UPF3A-205ENST00000479712 RIMBP2O15034 1052 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 MS4A1P11836 297 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 CLCN1P35523 988 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 ARSIQ5FYB1 569 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 C6orf132Q5T0Z8 1188 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 CERKQ8TCT0 537 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 ZDHHC16Q969W1 377 aa10.25□□□□□ -0.77
UPF3A-205ENST00000479712 BAZ1AQ9NRL2 1556 aaPredicted RBP10.25□□□□□ -0.77
UPF3A-205ENST00000479712 KHSRPQ92945 711 aaKnown RBP eCLIP10.24□□□□□ -0.77
UPF3A-205ENST00000479712 REPIN1Q9BWE0 567 aaKnown RBP10.24□□□□□ -0.77
UPF3A-205ENST00000479712 MDM2Q00987 491 aaPredicted RBP10.23□□□□□ -0.77
UPF3A-205ENST00000479712 PADI6Q6TGC4 694 aa10.23□□□□□ -0.77
UPF3A-205ENST00000479712 ZSWIM6Q9HCJ5 1215 aa10.23□□□□□ -0.77
UPF3A-205ENST00000479712 GPCPD1Q9NPB8 672 aa10.23□□□□□ -0.77
UPF3A-205ENST00000479712 ZNF710Q8N1W2 664 aa10.22□□□□□ -0.77
UPF3A-205ENST00000479712 PHOX2BQ99453 314 aa10.22□□□□□ -0.77
UPF3A-205ENST00000479712 TMUB1Q9BVT8 246 aa10.22□□□□□ -0.77
UPF3A-205ENST00000479712 NESP48681 1621 aa10.22□□□□□ -0.77
UPF3A-205ENST00000479712 OATP04181 439 aa10.21□□□□□ -0.77
UPF3A-205ENST00000479712 FAM161AQ3B820 660 aa10.21□□□□□ -0.77
UPF3A-205ENST00000479712 GOPCQ9HD26 462 aa10.21□□□□□ -0.77
UPF3A-205ENST00000479712 ERBB3P21860 1342 aa10.21□□□□□ -0.78
UPF3A-205ENST00000479712 METTL3Q86U44 580 aaKnown RBP10.2□□□□□ -0.78
UPF3A-205ENST00000479712 ADAM33Q9BZ11 813 aa10.2□□□□□ -0.78
UPF3A-205ENST00000479712 RBM27Q9P2N5 1060 aaKnown RBP10.2□□□□□ -0.78
UPF3A-205ENST00000479712 GPR153Q6NV75 609 aa10.19□□□□□ -0.78
UPF3A-205ENST00000479712 SUPT5HO00267 1087 aaKnown RBP10.18□□□□□ -0.78
UPF3A-205ENST00000479712 ADGRG1Q9Y653 693 aa10.18□□□□□ -0.78
UPF3A-205ENST00000479712 SSTR3P32745 418 aaPredicted RBP10.17□□□□□ -0.78
UPF3A-205ENST00000479712 TTC13Q8NBP0 860 aa10.17□□□□□ -0.78
UPF3A-205ENST00000479712 RNF166Q96A37 237 aaPredicted RBP10.17□□□□□ -0.78
UPF3A-205ENST00000479712 SMARCA2P51531 1590 aa10.17□□□□□ -0.78
UPF3A-205ENST00000479712 CYB5RLQ6IPT4 315 aa10.16□□□□□ -0.78
UPF3A-205ENST00000479712 PXYLP1Q8TE99 480 aa10.16□□□□□ -0.78
UPF3A-205ENST00000479712 NLRP7Q8WX94 980 aa10.16□□□□□ -0.78
UPF3A-205ENST00000479712 PCMTD1Q96MG8 357 aaPredicted RBP10.16□□□□□ -0.78
UPF3A-205ENST00000479712 PRSS12P56730 875 aa10.15□□□□□ -0.78
UPF3A-205ENST00000479712 PPP4R3BQ5MIZ7 849 aa10.15□□□□□ -0.78
UPF3A-205ENST00000479712 LHX6Q9UPM6 363 aa10.15□□□□□ -0.78
UPF3A-205ENST00000479712 SH3D19Q5HYK7 790 aa10.14□□□□□ -0.79
UPF3A-205ENST00000479712 CDCA7LQ96GN5 454 aa10.14□□□□□ -0.79
UPF3A-205ENST00000479712 ARXQ96QS3 562 aa10.14□□□□□ -0.79
UPF3A-205ENST00000479712 ZMYND15Q9H091 742 aa10.14□□□□□ -0.79
UPF3A-205ENST00000479712 FAM217BQ9NTX9 383 aaPredicted RBP10.14□□□□□ -0.79
UPF3A-205ENST00000479712 ARHGEF11O15085 1522 aa10.13□□□□□ -0.79
UPF3A-205ENST00000479712 PSDA5PKW4 1024 aaPredicted RBP10.13□□□□□ -0.79
UPF3A-205ENST00000479712 VARS2Q5ST30 1063 aaKnown RBP10.13□□□□□ -0.79
UPF3A-205ENST00000479712 BEGAINQ9BUH8 593 aa10.13□□□□□ -0.79
UPF3A-205ENST00000479712 LMTK3Q96Q04 1460 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms