RNA–Protein interactions for RNA: ENST00000477288.5

VARS2-209, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 6,054 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-209ENST00000477288 ATAD2BQ9ULI0 1458 aa23.21■■□□□ 1.31
VARS2-209ENST00000477288 CCER2I3L3R5 266 aa23.21■■□□□ 1.31
VARS2-209ENST00000477288 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.2■■□□□ 1.31
VARS2-209ENST00000477288 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.2■■□□□ 1.3
VARS2-209ENST00000477288 HDAC5Q9UQL6 1122 aa23.2■■□□□ 1.3
VARS2-209ENST00000477288 HMMRO75330 724 aa23.2■■□□□ 1.3
VARS2-209ENST00000477288 RALBP1Q15311 655 aa23.19■■□□□ 1.3
VARS2-209ENST00000477288 CCDC146Q8IYE0 955 aa23.19■■□□□ 1.3
VARS2-209ENST00000477288 MPHOSPH9Q99550 1183 aa23.19■■□□□ 1.3
VARS2-209ENST00000477288 CCDC34Q96HJ3 373 aa23.18■■□□□ 1.3
VARS2-209ENST00000477288 WASHC2CQ9Y4E1 1318 aa23.17■■□□□ 1.3
VARS2-209ENST00000477288 ANKRD30AQ9BXX3 1397 aa23.17■■□□□ 1.3
VARS2-209ENST00000477288 GOLGA6L1Q8N7Z2 621 aa23.17■■□□□ 1.3
VARS2-209ENST00000477288 PMFBP1Q8TBY8 1022 aa23.17■■□□□ 1.3
VARS2-209ENST00000477288 TNNT3P45378 269 aaPredicted RBP23.16■■□□□ 1.3
VARS2-209ENST00000477288 RBM19Q9Y4C8 960 aaKnown RBP23.16■■□□□ 1.3
VARS2-209ENST00000477288 MARCH6O60337 910 aa23.16■■□□□ 1.3
VARS2-209ENST00000477288 HNRNPMP52272 730 aaKnown RBP eCLIP23.15■■□□□ 1.3
VARS2-209ENST00000477288 CLUAP1Q96AJ1 413 aa23.15■■□□□ 1.3
VARS2-209ENST00000477288 CEP89Q96ST8 783 aa23.15■■□□□ 1.3
VARS2-209ENST00000477288 RAPGEF2Q9Y4G8 1499 aa23.14■■□□□ 1.29
VARS2-209ENST00000477288 FOXD4L5Q5VV16 416 aaPredicted RBP23.12■■□□□ 1.29
VARS2-209ENST00000477288 FOXD4L4Q8WXT5 416 aaPredicted RBP23.12■■□□□ 1.29
VARS2-209ENST00000477288 MSH5O43196 834 aa23.12■■□□□ 1.29
VARS2-209ENST00000477288 LMOD3Q0VAK6 560 aa23.11■■□□□ 1.29
VARS2-209ENST00000477288 GOLGA6L3A6NEY3 463 aa23.09■■□□□ 1.29
VARS2-209ENST00000477288 RAB3GAP2Q9H2M9 1393 aa23.09■■□□□ 1.29
VARS2-209ENST00000477288 PES1O00541 588 aaKnown RBP23.09■■□□□ 1.29
VARS2-209ENST00000477288 CSPP1Q1MSJ5 1256 aa23.09■■□□□ 1.29
VARS2-209ENST00000477288 WWC1Q8IX03 1113 aa23.08■■□□□ 1.28
VARS2-209ENST00000477288 EVA1CP58658 441 aa23.08■■□□□ 1.28
VARS2-209ENST00000477288 SMARCA4P51532 1647 aa23.07■■□□□ 1.28
VARS2-209ENST00000477288 TPM3P06753 285 aa23.07■■□□□ 1.28
VARS2-209ENST00000477288 TRAK1Q9UPV9 953 aa23.07■■□□□ 1.28
VARS2-209ENST00000477288 SF3A1Q15459 793 aaKnown RBP23.06■■□□□ 1.28
VARS2-209ENST00000477288 CENPJQ9HC77 1338 aaPredicted RBP23.04■■□□□ 1.28
VARS2-209ENST00000477288 FHOD3Q2V2M9 1422 aa23.04■■□□□ 1.28
VARS2-209ENST00000477288 TCERG1O14776 1098 aaKnown RBP23.04■■□□□ 1.28
VARS2-209ENST00000477288 KIF16BQ96L93 1317 aa23.03■■□□□ 1.28
VARS2-209ENST00000477288 C1orf141Q5JVX7 400 aa23.02■■□□□ 1.28
VARS2-209ENST00000477288 TPD52L1Q16890 204 aaPredicted RBP23.01■■□□□ 1.27
VARS2-209ENST00000477288 RRP7AQ9Y3A4 280 aaKnown RBP23.01■■□□□ 1.27
VARS2-209ENST00000477288 FBXO3Q9UK99 471 aa22.99■■□□□ 1.27
VARS2-209ENST00000477288 JPH4Q96JJ6 628 aa22.99■■□□□ 1.27
VARS2-209ENST00000477288 RAD21O60216 631 aa22.98■■□□□ 1.27
VARS2-209ENST00000477288 NGEFQ8N5V2 710 aa22.98■■□□□ 1.27
VARS2-209ENST00000477288 H3BQV1 296 aa22.97■■□□□ 1.27
VARS2-209ENST00000477288 IFFO2Q5TF58 517 aa22.97■■□□□ 1.27
VARS2-209ENST00000477288 ELL2O00472 640 aaPredicted RBP22.97■■□□□ 1.27
VARS2-209ENST00000477288 RILPL2Q969X0 211 aa22.97■■□□□ 1.27
VARS2-209ENST00000477288 ST18O60284 1047 aa22.96■■□□□ 1.27
VARS2-209ENST00000477288 KIF3AQ9Y496 699 aa22.96■■□□□ 1.27
VARS2-209ENST00000477288 RSPH4AQ5TD94 716 aa22.95■■□□□ 1.26
VARS2-209ENST00000477288 TRIM34Q9BYJ4 488 aa22.94■■□□□ 1.26
VARS2-209ENST00000477288 COG3Q96JB2 828 aa22.94■■□□□ 1.26
VARS2-209ENST00000477288 PHF14O94880 888 aa22.94■■□□□ 1.26
VARS2-209ENST00000477288 MEX3CQ5U5Q3 659 aaKnown RBP22.94■■□□□ 1.26
VARS2-209ENST00000477288 FOXD4L6Q3SYB3 417 aaPredicted RBP22.94■■□□□ 1.26
VARS2-209ENST00000477288 FOXD4L3Q6VB84 417 aaPredicted RBP22.94■■□□□ 1.26
VARS2-209ENST00000477288 AKAP17AQ02040 695 aaKnown RBP22.93■■□□□ 1.26
VARS2-209ENST00000477288 CCAR2Q8N163 923 aaKnown RBP22.93■■□□□ 1.26
VARS2-209ENST00000477288 FANCD2Q9BXW9 1451 aa22.93■■□□□ 1.26
VARS2-209ENST00000477288 L3MBTL2Q969R5 705 aa22.93■■□□□ 1.26
VARS2-209ENST00000477288 CTDP1Q9Y5B0 961 aaPredicted RBP22.92■■□□□ 1.26
VARS2-209ENST00000477288 TTC5Q8N0Z6 440 aa22.92■■□□□ 1.26
VARS2-209ENST00000477288 FAM184AQ8NB25 1140 aa22.91■■□□□ 1.26
VARS2-209ENST00000477288 CCDC18Q5T9S5 1454 aa22.91■■□□□ 1.26
VARS2-209ENST00000477288 TSR1Q2NL82 804 aaKnown RBP22.91■■□□□ 1.26
VARS2-209ENST00000477288 NOL10Q9BSC4 688 aaKnown RBP22.91■■□□□ 1.26
VARS2-209ENST00000477288 NLRP13Q86W25 1043 aa22.91■■□□□ 1.26
VARS2-209ENST00000477288 TCEAL9Q9UHQ7 104 aa22.91■■□□□ 1.26
VARS2-209ENST00000477288 USP35Q9P2H5 1018 aa22.91■■□□□ 1.26
VARS2-209ENST00000477288 TEFQ10587 303 aa22.9■■□□□ 1.26
VARS2-209ENST00000477288 SYTL4Q96C24 671 aaPredicted RBP22.9■■□□□ 1.26
VARS2-209ENST00000477288 RUSC2Q8N2Y8 1516 aa22.89■■□□□ 1.26
VARS2-209ENST00000477288 FBXW7Q969H0 707 aa22.89■■□□□ 1.26
VARS2-209ENST00000477288 EIF2S2P20042 333 aaKnown RBP22.88■■□□□ 1.25
VARS2-209ENST00000477288 PATL2C9JE40 543 aaKnown RBP22.88■■□□□ 1.25
VARS2-209ENST00000477288 AMOTL1Q8IY63 956 aa22.88■■□□□ 1.25
VARS2-209ENST00000477288 BCL2L13Q9BXK5 485 aa22.87■■□□□ 1.25
VARS2-209ENST00000477288 SYNE3Q6ZMZ3 975 aa22.87■■□□□ 1.25
VARS2-209ENST00000477288 TPM2P07951 284 aa22.86■■□□□ 1.25
VARS2-209ENST00000477288 IPO9Q96P70 1041 aaKnown RBP22.86■■□□□ 1.25
VARS2-209ENST00000477288 ANKRD45Q5TZF3 282 aa22.86■■□□□ 1.25
VARS2-209ENST00000477288 MCTP1Q6DN14 999 aa22.86■■□□□ 1.25
VARS2-209ENST00000477288 NEXNQ0ZGT2 675 aa22.85■■□□□ 1.25
VARS2-209ENST00000477288 GOLGA6L19H0YKK7 550 aa22.85■■□□□ 1.25
VARS2-209ENST00000477288 KRI1Q8N9T8 703 aaKnown RBP22.85■■□□□ 1.25
VARS2-209ENST00000477288 KLHL34Q8N239 644 aa22.84■■□□□ 1.25
VARS2-209ENST00000477288 PANK3Q9H999 370 aa22.84■■□□□ 1.25
VARS2-209ENST00000477288 MINK1Q8N4C8 1332 aaPredicted RBP22.83■■□□□ 1.25
VARS2-209ENST00000477288 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.24
VARS2-209ENST00000477288 PCMTD1Q96MG8 357 aaPredicted RBP22.83■■□□□ 1.24
VARS2-209ENST00000477288 NECTIN2Q92692 538 aa22.82■■□□□ 1.24
VARS2-209ENST00000477288 C9orf78Q9NZ63 289 aaPredicted RBP22.82■■□□□ 1.24
VARS2-209ENST00000477288 BECN2A8MW95 431 aa22.82■■□□□ 1.24
VARS2-209ENST00000477288 VPS37DQ86XT2 251 aa22.82■■□□□ 1.24
VARS2-209ENST00000477288 PDE3BQ13370 1112 aa22.81■■□□□ 1.24
VARS2-209ENST00000477288 DHX16O60231 1041 aaKnown RBP22.81■■□□□ 1.24
VARS2-209ENST00000477288 TPM1P09493 284 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms