RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 POTEHQ6S545 545 aa7.67□□□□□ -1.18
VPS13D-207ENST00000476169 TSR1Q2NL82 804 aaKnown RBP7.66□□□□□ -1.18
VPS13D-207ENST00000476169 FBXW7Q969H0 707 aa7.66□□□□□ -1.18
VPS13D-207ENST00000476169 JPH4Q96JJ6 628 aa7.66□□□□□ -1.18
VPS13D-207ENST00000476169 MS4A1P11836 297 aa7.64□□□□□ -1.19
VPS13D-207ENST00000476169 CLCN1P35523 988 aa7.64□□□□□ -1.19
VPS13D-207ENST00000476169 ZMYND15Q9H091 742 aa7.64□□□□□ -1.19
VPS13D-207ENST00000476169 RANGAP1P46060 587 aaPredicted RBP7.63□□□□□ -1.19
VPS13D-207ENST00000476169 MDM2Q00987 491 aaPredicted RBP7.63□□□□□ -1.19
VPS13D-207ENST00000476169 REPIN1Q9BWE0 567 aaKnown RBP7.63□□□□□ -1.19
VPS13D-207ENST00000476169 GOPCQ9HD26 462 aa7.63□□□□□ -1.19
VPS13D-207ENST00000476169 KDM4FA0A1W2PPD8 638 aa7.62□□□□□ -1.19
VPS13D-207ENST00000476169 FOSBP53539 338 aa7.62□□□□□ -1.19
VPS13D-207ENST00000476169 PCMTD1Q96MG8 357 aaPredicted RBP7.62□□□□□ -1.19
VPS13D-207ENST00000476169 GPCPD1Q9NPB8 672 aa7.62□□□□□ -1.19
VPS13D-207ENST00000476169 ZNF454Q8N9F8 522 aa7.61□□□□□ -1.19
VPS13D-207ENST00000476169 CERKQ8TCT0 537 aa7.61□□□□□ -1.19
VPS13D-207ENST00000476169 SP7Q8TDD2 431 aaPredicted RBP7.61□□□□□ -1.19
VPS13D-207ENST00000476169 PODXL2Q9NZ53 605 aa7.61□□□□□ -1.19
VPS13D-207ENST00000476169 C6orf132Q5T0Z8 1188 aa7.6□□□□□ -1.19
VPS13D-207ENST00000476169 PADI6Q6TGC4 694 aa7.6□□□□□ -1.19
VPS13D-207ENST00000476169 ZDHHC16Q969W1 377 aa7.6□□□□□ -1.19
VPS13D-207ENST00000476169 PHOX2BQ99453 314 aa7.6□□□□□ -1.19
VPS13D-207ENST00000476169 TMUB1Q9BVT8 246 aa7.6□□□□□ -1.19
VPS13D-207ENST00000476169 RSPH6AQ9H0K4 717 aa7.6□□□□□ -1.19
VPS13D-207ENST00000476169 OATP04181 439 aa7.59□□□□□ -1.19
VPS13D-207ENST00000476169 DOK7Q18PE1 504 aa7.59□□□□□ -1.19
VPS13D-207ENST00000476169 FAM161AQ3B820 660 aa7.59□□□□□ -1.19
VPS13D-207ENST00000476169 RIMBP2O15034 1052 aa7.58□□□□□ -1.2
VPS13D-207ENST00000476169 NUDT7P0C024 238 aa7.58□□□□□ -1.2
VPS13D-207ENST00000476169 SSTR3P32745 418 aaPredicted RBP7.58□□□□□ -1.2
VPS13D-207ENST00000476169 FLIIQ13045 1269 aa7.58□□□□□ -1.2
VPS13D-207ENST00000476169 SH3D19Q5HYK7 790 aa7.58□□□□□ -1.2
VPS13D-207ENST00000476169 METTL3Q86U44 580 aaKnown RBP7.58□□□□□ -1.2
VPS13D-207ENST00000476169 ARSIQ5FYB1 569 aa7.57□□□□□ -1.2
VPS13D-207ENST00000476169 NLRP7Q8WX94 980 aa7.57□□□□□ -1.2
VPS13D-207ENST00000476169 KHSRPQ92945 711 aaKnown RBP eCLIP7.57□□□□□ -1.27e-13■■■■□ 21.5
VPS13D-207ENST00000476169 ADGRG1Q9Y653 693 aa7.57□□□□□ -1.2
VPS13D-207ENST00000476169 BEGAINQ9BUH8 593 aa7.56□□□□□ -1.2
VPS13D-207ENST00000476169 ADAM33Q9BZ11 813 aa7.56□□□□□ -1.2
VPS13D-207ENST00000476169 FAM217BQ9NTX9 383 aaPredicted RBP7.56□□□□□ -1.2
VPS13D-207ENST00000476169 RBM27Q9P2N5 1060 aaKnown RBP7.56□□□□□ -1.2
VPS13D-207ENST00000476169 HOXB3P14651 431 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-207ENST00000476169 PXYLP1Q8TE99 480 aa7.55□□□□□ -1.2
VPS13D-207ENST00000476169 ZSWIM6Q9HCJ5 1215 aa7.55□□□□□ -1.2
VPS13D-207ENST00000476169 ATP1B4Q9UN42 357 aaPredicted RBP7.55□□□□□ -1.2
VPS13D-207ENST00000476169 PRSS12P56730 875 aa7.54□□□□□ -1.2
VPS13D-207ENST00000476169 TTC13Q8NBP0 860 aa7.54□□□□□ -1.2
VPS13D-207ENST00000476169 SKIV2LQ15477 1246 aaKnown RBP7.53□□□□□ -1.2
VPS13D-207ENST00000476169 ZNF710Q8N1W2 664 aa7.53□□□□□ -1.2
VPS13D-207ENST00000476169 POTEJP0CG39 1038 aa7.52□□□□□ -1.21
VPS13D-207ENST00000476169 GPR153Q6NV75 609 aa7.52□□□□□ -1.21
VPS13D-207ENST00000476169 RBM46Q8TBY0 533 aaKnown RBP7.52□□□□□ -1.21
VPS13D-207ENST00000476169 CDCA7LQ96GN5 454 aa7.52□□□□□ -1.21
VPS13D-207ENST00000476169 ONECUT3O60422 494 aaPredicted RBP7.51□□□□□ -1.21
VPS13D-207ENST00000476169 PPP4R3BQ5MIZ7 849 aa7.51□□□□□ -1.21
VPS13D-207ENST00000476169 LHX6Q9UPM6 363 aa7.51□□□□□ -1.21
VPS13D-207ENST00000476169 SCUBE2Q9NQ36 999 aa7.5□□□□□ -1.21
VPS13D-207ENST00000476169 POLR3EQ9NVU0 708 aa7.5□□□□□ -1.21
VPS13D-207ENST00000476169 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.49□□□□□ -1.21
VPS13D-207ENST00000476169 PSDA5PKW4 1024 aaPredicted RBP7.49□□□□□ -1.21
VPS13D-207ENST00000476169 MAMSTRQ6ZN01 415 aa7.49□□□□□ -1.21
VPS13D-207ENST00000476169 UBTFP17480 764 aaKnown RBP7.48□□□□□ -1.21
VPS13D-207ENST00000476169 COL9A1P20849 921 aa7.48□□□□□ -1.21
VPS13D-207ENST00000476169 MYSM1Q5VVJ2 828 aa7.48□□□□□ -1.21
VPS13D-207ENST00000476169 PROCA1Q8NCQ7 364 aaPredicted RBP7.48□□□□□ -1.21
VPS13D-207ENST00000476169 POTEB2H3BUK9 544 aa7.47□□□□□ -1.21
VPS13D-207ENST00000476169 CLK2P49760 499 aaKnown RBP7.47□□□□□ -1.21
VPS13D-207ENST00000476169 MCM6Q14566 821 aa7.47□□□□□ -1.21
VPS13D-207ENST00000476169 TBC1D2Q9BYX2 928 aa7.47□□□□□ -1.21
VPS13D-207ENST00000476169 BCL2L12Q9HB09 334 aa7.47□□□□□ -1.21
VPS13D-207ENST00000476169 FAM198AQ9UFP1 575 aa7.47□□□□□ -1.21
VPS13D-207ENST00000476169 RCCD1A6NED2 376 aa7.46□□□□□ -1.22
VPS13D-207ENST00000476169 PPP1R3GB7ZBB8 358 aa7.46□□□□□ -1.22
VPS13D-207ENST00000476169 PTPREP23469 700 aa7.46□□□□□ -1.22
VPS13D-207ENST00000476169 DIXDC1Q155Q3 683 aa7.46□□□□□ -1.22
VPS13D-207ENST00000476169 CLUAP1Q96AJ1 413 aa7.46□□□□□ -1.22
VPS13D-207ENST00000476169 A6NJR5 290 aa7.45□□□□□ -1.22
VPS13D-207ENST00000476169 NBPF26B4DH59 902 aa7.45□□□□□ -1.22
VPS13D-207ENST00000476169 EYA1Q99502 592 aa7.45□□□□□ -1.22
VPS13D-207ENST00000476169 ARID3AQ99856 593 aa7.45□□□□□ -1.22
VPS13D-207ENST00000476169 C1orf115Q9H7X2 142 aa7.45□□□□□ -1.22
VPS13D-207ENST00000476169 ARID3CA6NKF2 412 aa7.44□□□□□ -1.22
VPS13D-207ENST00000476169 APBB1O00213 710 aa7.44□□□□□ -1.22
VPS13D-207ENST00000476169 NUDT18Q6ZVK8 323 aa7.44□□□□□ -1.22
VPS13D-207ENST00000476169 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS13D-207ENST00000476169 TSKSQ9UJT2 592 aa7.44□□□□□ -1.22
VPS13D-207ENST00000476169 SNPHO15079 494 aa7.43□□□□□ -1.22
VPS13D-207ENST00000476169 DNAJB2P25686 324 aa7.43□□□□□ -1.22
VPS13D-207ENST00000476169 PACS2Q86VP3 889 aa7.43□□□□□ -1.22
VPS13D-207ENST00000476169 SULF1Q8IWU6 871 aa7.43□□□□□ -1.22
VPS13D-207ENST00000476169 DDX11L8A8MPP1 907 aa7.42□□□□□ -1.22
VPS13D-207ENST00000476169 TRIM6-TRIM34B2RNG4 842 aa7.42□□□□□ -1.22
VPS13D-207ENST00000476169 CD46P15529 392 aa7.42□□□□□ -1.22
VPS13D-207ENST00000476169 SPIRE2Q8WWL2 714 aa7.42□□□□□ -1.22
VPS13D-207ENST00000476169 TATDN2Q93075 761 aa7.42□□□□□ -1.22
VPS13D-207ENST00000476169 PNMA3Q9UL41 463 aa7.42□□□□□ -1.22
VPS13D-207ENST00000476169 C3orf80F5H4A9 247 aa7.41□□□□□ -1.22
VPS13D-207ENST00000476169 RAD21O60216 631 aa7.41□□□□□ -1.22
VPS13D-207ENST00000476169 TRAK2O60296 914 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms