RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 MYOM3Q5VTT5 1437 aa11.09□□□□□ -0.63
HDAC3-207ENST00000475549 MIA2Q96PC5 1412 aa11.09□□□□□ -0.63
HDAC3-207ENST00000475549 ZNF335Q9H4Z2 1342 aaPredicted RBP11.09□□□□□ -0.63
HDAC3-207ENST00000475549 ADGBQ8N7X0 1667 aa11.08□□□□□ -0.64
HDAC3-207ENST00000475549 ARHGEF5Q12774 1597 aa11.08□□□□□ -0.64
HDAC3-207ENST00000475549 PKD2Q13563 968 aa11.08□□□□□ -0.64
HDAC3-207ENST00000475549 TCOF1Q13428 1488 aaKnown RBP11.07□□□□□ -0.64
HDAC3-207ENST00000475549 PLA2R1Q13018 1463 aa11.06□□□□□ -0.64
HDAC3-207ENST00000475549 TNRQ92752 1358 aa11.06□□□□□ -0.64
HDAC3-207ENST00000475549 A2ML1A8K2U0 1454 aa11.06□□□□□ -0.64
HDAC3-207ENST00000475549 PZPP20742 1482 aa11.06□□□□□ -0.64
HDAC3-207ENST00000475549 ABCC5O15440 1437 aa11.05□□□□□ -0.64
HDAC3-207ENST00000475549 CEP170BQ9Y4F5 1589 aaPredicted RBP11.05□□□□□ -0.64
HDAC3-207ENST00000475549 RRP7BPQ9NSQ0 103 aa11.04□□□□□ -0.64
HDAC3-207ENST00000475549 MYO3AQ8NEV4 1616 aa11.04□□□□□ -0.64
HDAC3-207ENST00000475549 KDM5DQ9BY66 1539 aa11.04□□□□□ -0.64
HDAC3-207ENST00000475549 APLP2Q06481 763 aa11.03□□□□□ -0.64
HDAC3-207ENST00000475549 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.03□□□□□ -0.64
HDAC3-207ENST00000475549 MAST1Q9Y2H9 1570 aa11.02□□□□□ -0.65
HDAC3-207ENST00000475549 DNMT1P26358 1616 aaKnown RBP11.02□□□□□ -0.65
HDAC3-207ENST00000475549 ANKLE2Q86XL3 938 aa11.01□□□□□ -0.65
HDAC3-207ENST00000475549 THEMISQ8N1K5 641 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-207ENST00000475549 ZNF142P52746 1687 aaPredicted RBP11.01□□□□□ -0.65
HDAC3-207ENST00000475549 ABCC3O15438 1527 aa11□□□□□ -0.65
HDAC3-207ENST00000475549 FAM135AQ9P2D6 1515 aa11□□□□□ -0.65
HDAC3-207ENST00000475549 CHIC2Q9UKJ5 165 aa11□□□□□ -0.65
HDAC3-207ENST00000475549 KIF15Q9NS87 1388 aa11□□□□□ -0.65
HDAC3-207ENST00000475549 FGD6Q6ZV73 1430 aa11□□□□□ -0.65
HDAC3-207ENST00000475549 DAPK1P53355 1430 aa10.99□□□□□ -0.65
HDAC3-207ENST00000475549 NLRP1Q9C000 1473 aa10.99□□□□□ -0.65
HDAC3-207ENST00000475549 MROH1Q8NDA8 1641 aa10.98□□□□□ -0.65
HDAC3-207ENST00000475549 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.98□□□□□ -0.65
HDAC3-207ENST00000475549 IQSEC2Q5JU85 1478 aa10.98□□□□□ -0.65
HDAC3-207ENST00000475549 DUOX2Q9NRD8 1548 aa10.98□□□□□ -0.65
HDAC3-207ENST00000475549 RNF17Q9BXT8 1623 aaKnown RBP10.98□□□□□ -0.65
HDAC3-207ENST00000475549 UBAP1LF5GYI3 381 aa10.97□□□□□ -0.65
HDAC3-207ENST00000475549 NEURL4Q96JN8 1562 aa10.97□□□□□ -0.65
HDAC3-207ENST00000475549 SPATA31D1Q6ZQQ2 1576 aa10.96□□□□□ -0.65
HDAC3-207ENST00000475549 UGGT1Q9NYU2 1555 aa10.96□□□□□ -0.65
HDAC3-207ENST00000475549 ERVK-7P63135 1459 aa10.96□□□□□ -0.65
HDAC3-207ENST00000475549 SHANK2Q9UPX8 1470 aa10.96□□□□□ -0.65
HDAC3-207ENST00000475549 LTKP29376 864 aa10.96□□□□□ -0.65
HDAC3-207ENST00000475549 PTPN23Q9H3S7 1636 aa10.95□□□□□ -0.66
HDAC3-207ENST00000475549 MED14O60244 1454 aa10.95□□□□□ -0.66
HDAC3-207ENST00000475549 ARHGAP31Q2M1Z3 1444 aa10.95□□□□□ -0.66
HDAC3-207ENST00000475549 ERBINQ96RT1 1412 aa10.95□□□□□ -0.66
HDAC3-207ENST00000475549 ILDR2Q71H61 639 aa10.95□□□□□ -0.66
HDAC3-207ENST00000475549 NPHP4O75161 1426 aaPredicted RBP10.94□□□□□ -0.66
HDAC3-207ENST00000475549 EIF2AK4Q9P2K8 1649 aaKnown RBP10.94□□□□□ -0.66
HDAC3-207ENST00000475549 ANKRD30AQ9BXX3 1397 aa10.93□□□□□ -0.66
HDAC3-207ENST00000475549 FAM50AQ14320 339 aaKnown RBP10.93□□□□□ -0.66
HDAC3-207ENST00000475549 VWDEQ8N2E2 1590 aa10.92□□□□□ -0.66
HDAC3-207ENST00000475549 IDI1Q13907 227 aa10.92□□□□□ -0.66
HDAC3-207ENST00000475549 TXNDC2Q86VQ3 553 aa10.92□□□□□ -0.66
HDAC3-207ENST00000475549 PRDM15P57071 1507 aaPredicted RBP10.92□□□□□ -0.66
HDAC3-207ENST00000475549 DISP3Q9P2K9 1392 aa10.91□□□□□ -0.66
HDAC3-207ENST00000475549 HSPA1LP34931 641 aa10.9□□□□□ -0.66
HDAC3-207ENST00000475549 PIP4K2BP78356 416 aa10.9□□□□□ -0.66
HDAC3-207ENST00000475549 ARHGAP23Q9P227 1491 aa10.89□□□□□ -0.67
HDAC3-207ENST00000475549 PPARGC1BQ86YN6 1023 aaKnown RBP10.89□□□□□ -0.67
HDAC3-207ENST00000475549 TMEM2Q9UHN6 1383 aa10.89□□□□□ -0.67
HDAC3-207ENST00000475549 CPS1P31327 1500 aa10.89□□□□□ -0.67
HDAC3-207ENST00000475549 ZC3H13Q5T200 1668 aaKnown RBP10.89□□□□□ -0.67
HDAC3-207ENST00000475549 ADGRL2O95490 1459 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 DEPDC5O75140 1603 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 TOM1O60784 492 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 ANKRD50Q9ULJ7 1429 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 CROCC2H7BZ55 1655 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 LMTK2Q8IWU2 1503 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 KANK1Q14678 1352 aa10.88□□□□□ -0.67
HDAC3-207ENST00000475549 NOS1P29475 1434 aa10.87□□□□□ -0.67
HDAC3-207ENST00000475549 SLIT1O75093 1534 aa10.87□□□□□ -0.67
HDAC3-207ENST00000475549 SCAF11Q99590 1463 aaKnown RBP10.87□□□□□ -0.67
HDAC3-207ENST00000475549 CEP152O94986 1710 aa10.87□□□□□ -0.67
HDAC3-207ENST00000475549 LRRC7Q96NW7 1537 aa10.86□□□□□ -0.67
HDAC3-207ENST00000475549 ALKQ9UM73 1620 aa10.86□□□□□ -0.67
HDAC3-207ENST00000475549 SCAF1Q9H7N4 1312 aaKnown RBP10.85□□□□□ -0.67
HDAC3-207ENST00000475549 SLC52A1Q9NWF4 448 aa10.85□□□□□ -0.67
HDAC3-207ENST00000475549 STAG3Q9UJ98 1225 aa10.85□□□□□ -0.67
HDAC3-207ENST00000475549 EID1Q9Y6B2 187 aa10.85□□□□□ -0.67
HDAC3-207ENST00000475549 POLR1AO95602 1720 aaPredicted RBP10.84□□□□□ -0.67
HDAC3-207ENST00000475549 UBR1Q8IWV7 1749 aa10.84□□□□□ -0.67
HDAC3-207ENST00000475549 SLC26A8Q96RN1 970 aa10.84□□□□□ -0.67
HDAC3-207ENST00000475549 IQGAP1P46940 1657 aa10.84□□□□□ -0.67
HDAC3-207ENST00000475549 SYNMO15061 1565 aa10.83□□□□□ -0.68
HDAC3-207ENST00000475549 ITGAEP38570 1179 aa10.82□□□□□ -0.68
HDAC3-207ENST00000475549 RBM33Q96EV2 1170 aaKnown RBP10.82□□□□□ -0.68
HDAC3-207ENST00000475549 PIK3C2BO00750 1634 aa10.82□□□□□ -0.68
HDAC3-207ENST00000475549 STRCP1A6NGW2 1772 aa10.82□□□□□ -0.68
HDAC3-207ENST00000475549 ROCK1Q13464 1354 aa10.81□□□□□ -0.68
HDAC3-207ENST00000475549 EFCAB6Q5THR3 1501 aa10.81□□□□□ -0.68
HDAC3-207ENST00000475549 SOCS7O14512 581 aa10.81□□□□□ -0.68
HDAC3-207ENST00000475549 TET3O43151 1660 aa10.8□□□□□ -0.68
HDAC3-207ENST00000475549 KCNA6P17658 529 aa10.8□□□□□ -0.68
HDAC3-207ENST00000475549 CFAP65Q6ZU64 1925 aaKnown RBP10.8□□□□□ -0.68
HDAC3-207ENST00000475549 RPRD2Q5VT52 1461 aaKnown RBP10.79□□□□□ -0.68
HDAC3-207ENST00000475549 TMEM94Q12767 1356 aa10.78□□□□□ -0.68
HDAC3-207ENST00000475549 ZFYVE9O95405 1425 aa10.78□□□□□ -0.68
HDAC3-207ENST00000475549 NUTM2DQ5VT03 806 aaPredicted RBP10.78□□□□□ -0.68
HDAC3-207ENST00000475549 NUP155O75694 1391 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms