RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 DENND4BO75064 1496 aaPredicted RBP12.29□□□□□ -0.44
NPHP3-204ENST00000469232 RICTORQ6R327 1708 aa12.29□□□□□ -0.44
NPHP3-204ENST00000469232 FRMPD1Q5SYB0 1578 aa12.28□□□□□ -0.44
NPHP3-204ENST00000469232 ANKRD30AQ9BXX3 1397 aa12.27□□□□□ -0.44
NPHP3-204ENST00000469232 TSPY4P0CV99 314 aa12.27□□□□□ -0.44
NPHP3-204ENST00000469232 TSPY10P0CW01 314 aa12.27□□□□□ -0.44
NPHP3-204ENST00000469232 ZBTB12Q9Y330 459 aaPredicted RBP12.26□□□□□ -0.45
NPHP3-204ENST00000469232 AFAP1Q8N556 730 aa12.26□□□□□ -0.45
NPHP3-204ENST00000469232 COL17A1Q9UMD9 1497 aaPredicted RBP12.26□□□□□ -0.45
NPHP3-204ENST00000469232 TSPOAP1O95153 1857 aa12.26□□□□□ -0.45
NPHP3-204ENST00000469232 ATP7AQ04656 1500 aa12.25□□□□□ -0.45
NPHP3-204ENST00000469232 ACIN1Q9UKV3 1341 aaKnown RBP12.25□□□□□ -0.45
NPHP3-204ENST00000469232 KIDINS220Q9ULH0 1771 aa12.25□□□□□ -0.45
NPHP3-204ENST00000469232 MAGI2Q86UL8 1455 aa12.25□□□□□ -0.45
NPHP3-204ENST00000469232 ITGAEP38570 1179 aa12.25□□□□□ -0.45
NPHP3-204ENST00000469232 RAB3GAP2Q9H2M9 1393 aa12.24□□□□□ -0.45
NPHP3-204ENST00000469232 HECW2Q9P2P5 1572 aa12.24□□□□□ -0.45
NPHP3-204ENST00000469232 SPAG9O60271 1321 aaKnown RBP12.24□□□□□ -0.45
NPHP3-204ENST00000469232 KIF15Q9NS87 1388 aa12.23□□□□□ -0.45
NPHP3-204ENST00000469232 DUOX2Q9NRD8 1548 aa12.23□□□□□ -0.45
NPHP3-204ENST00000469232 CHIC2Q9UKJ5 165 aa12.22□□□□□ -0.45
NPHP3-204ENST00000469232 ANKRD50Q9ULJ7 1429 aa12.22□□□□□ -0.45
NPHP3-204ENST00000469232 KDM6BO15054 1643 aa12.21□□□□□ -0.45
NPHP3-204ENST00000469232 ERBINQ96RT1 1412 aa12.21□□□□□ -0.46
NPHP3-204ENST00000469232 REREQ9P2R6 1566 aa12.21□□□□□ -0.46
NPHP3-204ENST00000469232 BCORL1Q5H9F3 1711 aa12.2□□□□□ -0.46
NPHP3-204ENST00000469232 RRP7BPQ9NSQ0 103 aa12.2□□□□□ -0.46
NPHP3-204ENST00000469232 DHX29Q7Z478 1369 aaKnown RBP12.19□□□□□ -0.46
NPHP3-204ENST00000469232 RAPGEF3O95398 923 aa12.19□□□□□ -0.46
NPHP3-204ENST00000469232 ABCA6Q8N139 1617 aa12.19□□□□□ -0.46
NPHP3-204ENST00000469232 DIP2CQ9Y2E4 1556 aa12.19□□□□□ -0.46
NPHP3-204ENST00000469232 KDM5DQ9BY66 1539 aa12.19□□□□□ -0.46
NPHP3-204ENST00000469232 EIF2AK4Q9P2K8 1649 aaKnown RBP12.18□□□□□ -0.46
NPHP3-204ENST00000469232 RBM42Q9BTD8 480 aaKnown RBP12.18□□□□□ -0.46
NPHP3-204ENST00000469232 UNC13BO14795 1591 aa12.17□□□□□ -0.46
NPHP3-204ENST00000469232 DEPDC5O75140 1603 aa12.16□□□□□ -0.46
NPHP3-204ENST00000469232 A2MP01023 1474 aa12.16□□□□□ -0.46
NPHP3-204ENST00000469232 YEATS2Q9ULM3 1422 aa12.16□□□□□ -0.46
NPHP3-204ENST00000469232 ARHGEF40Q8TER5 1519 aa12.16□□□□□ -0.46
NPHP3-204ENST00000469232 DHX57Q6P158 1386 aaKnown RBP12.15□□□□□ -0.46
NPHP3-204ENST00000469232 AGLP35573 1532 aa12.15□□□□□ -0.46
NPHP3-204ENST00000469232 ATP10AO60312 1499 aa12.14□□□□□ -0.47
NPHP3-204ENST00000469232 RNF17Q9BXT8 1623 aaKnown RBP12.14□□□□□ -0.47
NPHP3-204ENST00000469232 VWDEQ8N2E2 1590 aa12.14□□□□□ -0.47
NPHP3-204ENST00000469232 CLSPNQ9HAW4 1339 aa12.13□□□□□ -0.47
NPHP3-204ENST00000469232 MROH1Q8NDA8 1641 aa12.13□□□□□ -0.47
NPHP3-204ENST00000469232 PZPP20742 1482 aa12.13□□□□□ -0.47
NPHP3-204ENST00000469232 PRDM15P57071 1507 aaPredicted RBP12.12□□□□□ -0.47
NPHP3-204ENST00000469232 IQGAP3Q86VI3 1631 aa12.11□□□□□ -0.47
NPHP3-204ENST00000469232 LMTK2Q8IWU2 1503 aa12.09□□□□□ -0.47
NPHP3-204ENST00000469232 FAM135AQ9P2D6 1515 aa12.09□□□□□ -0.47
NPHP3-204ENST00000469232 SIGLEC1Q9BZZ2 1709 aa12.07□□□□□ -0.48
NPHP3-204ENST00000469232 MPHOSPH9Q99550 1183 aa12.06□□□□□ -0.48
NPHP3-204ENST00000469232 NUP155O75694 1391 aa12.06□□□□□ -0.48
NPHP3-204ENST00000469232 MKRN4PQ13434 485 aaPredicted RBP12.05□□□□□ -0.48
NPHP3-204ENST00000469232 KIF3BO15066 747 aa12.04□□□□□ -0.48
NPHP3-204ENST00000469232 TET3O43151 1660 aa12.03□□□□□ -0.48
NPHP3-204ENST00000469232 ANKRD30BQ9BXX2 1392 aa12.03□□□□□ -0.48
NPHP3-204ENST00000469232 ZC3H13Q5T200 1668 aaKnown RBP12.02□□□□□ -0.48
NPHP3-204ENST00000469232 TRIM52Q96A61 297 aa12.02□□□□□ -0.49
NPHP3-204ENST00000469232 ABCC3O15438 1527 aa12.02□□□□□ -0.49
NPHP3-204ENST00000469232 MYT1LQ9UL68 1186 aa12.01□□□□□ -0.49
NPHP3-204ENST00000469232 ARHGAP31Q2M1Z3 1444 aa12.01□□□□□ -0.49
NPHP3-204ENST00000469232 KANK1Q14678 1352 aa12□□□□□ -0.49
NPHP3-204ENST00000469232 EFCAB6Q5THR3 1501 aa12□□□□□ -0.49
NPHP3-204ENST00000469232 RPRD2Q5VT52 1461 aaKnown RBP12□□□□□ -0.49
NPHP3-204ENST00000469232 CCER1Q8TC90 406 aaPredicted RBP12□□□□□ -0.49
NPHP3-204ENST00000469232 PTPRTO14522 1441 aa12□□□□□ -0.49
NPHP3-204ENST00000469232 PLA2R1Q13018 1463 aa11.99□□□□□ -0.49
NPHP3-204ENST00000469232 E9PCH4 1651 aa11.99□□□□□ -0.49
NPHP3-204ENST00000469232 PKD2Q13563 968 aa11.98□□□□□ -0.49
NPHP3-204ENST00000469232 AKT1S1Q96B36 256 aa11.97□□□□□ -0.49
NPHP3-204ENST00000469232 CEP152O94986 1710 aa11.96□□□□□ -0.49
NPHP3-204ENST00000469232 CAMSAP1Q5T5Y3 1602 aa11.96□□□□□ -0.49
NPHP3-204ENST00000469232 NPATQ14207 1427 aa11.96□□□□□ -0.5
NPHP3-204ENST00000469232 TIMELESSQ9UNS1 1208 aa11.95□□□□□ -0.5
NPHP3-204ENST00000469232 NOS1P29475 1434 aa11.95□□□□□ -0.5
NPHP3-204ENST00000469232 TRPM2O94759 1503 aa11.95□□□□□ -0.5
NPHP3-204ENST00000469232 ZEB1P37275 1124 aaPredicted RBP11.94□□□□□ -0.5
NPHP3-204ENST00000469232 GGT6Q6P531 493 aa11.94□□□□□ -0.5
NPHP3-204ENST00000469232 CNTLNQ9NXG0 1405 aa11.94□□□□□ -0.5
NPHP3-204ENST00000469232 NEURL4Q96JN8 1562 aa11.94□□□□□ -0.5
NPHP3-204ENST00000469232 MROH2AA6NES4 1674 aa11.94□□□□□ -0.5
NPHP3-204ENST00000469232 WASHC2CQ9Y4E1 1318 aa11.93□□□□□ -0.5
NPHP3-204ENST00000469232 SPHKAPQ2M3C7 1700 aa11.92□□□□□ -0.5
NPHP3-204ENST00000469232 SPDYE2BA6NHP3 402 aa11.92□□□□□ -0.5
NPHP3-204ENST00000469232 SPDYE6P0CI01 402 aa11.92□□□□□ -0.5
NPHP3-204ENST00000469232 SPDYE2Q495Y8 402 aa11.92□□□□□ -0.5
NPHP3-204ENST00000469232 ADAMTSL3P82987 1691 aa11.91□□□□□ -0.5
NPHP3-204ENST00000469232 PIK3C2BO00750 1634 aa11.9□□□□□ -0.5
NPHP3-204ENST00000469232 CLTCQ00610 1675 aaKnown RBP11.9□□□□□ -0.5
NPHP3-204ENST00000469232 SPATA31D1Q6ZQQ2 1576 aa11.9□□□□□ -0.5
NPHP3-204ENST00000469232 SIN3AQ96ST3 1273 aa11.89□□□□□ -0.51
NPHP3-204ENST00000469232 SPATA31E1Q6ZUB1 1445 aa11.89□□□□□ -0.51
NPHP3-204ENST00000469232 SYNMO15061 1565 aa11.88□□□□□ -0.51
NPHP3-204ENST00000469232 ERVK-7P63135 1459 aa11.88□□□□□ -0.51
NPHP3-204ENST00000469232 PREX1Q8TCU6 1659 aa11.88□□□□□ -0.51
NPHP3-204ENST00000469232 ZMYM3Q14202 1370 aa11.87□□□□□ -0.51
NPHP3-204ENST00000469232 CLTCL1P53675 1640 aa11.87□□□□□ -0.51
NPHP3-204ENST00000469232 CCDC144AA2RUR9 1427 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms