RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 PREX2Q70Z35 1606 aa8.91□□□□□ -0.98
USP39-213ENST00000467885 RTEL1-TNFRSF6BF6WH68 1400 aa8.9□□□□□ -0.98
USP39-213ENST00000467885 SETD5Q9C0A6 1442 aa8.9□□□□□ -0.98
USP39-213ENST00000467885 ANKRD30AQ9BXX3 1397 aa8.9□□□□□ -0.98
USP39-213ENST00000467885 TEX14Q8IWB6 1497 aa8.89□□□□□ -0.99
USP39-213ENST00000467885 NAIPQ13075 1403 aa8.89□□□□□ -0.99
USP39-213ENST00000467885 MYT1LQ9UL68 1186 aa8.89□□□□□ -0.99
USP39-213ENST00000467885 MYO5CQ9NQX4 1742 aa8.88□□□□□ -0.99
USP39-213ENST00000467885 ARHGEF5Q12774 1597 aa8.88□□□□□ -0.99
USP39-213ENST00000467885 KIF13AQ9H1H9 1805 aa8.88□□□□□ -0.99
USP39-213ENST00000467885 CCDC141Q6ZP82 1450 aa8.88□□□□□ -0.99
USP39-213ENST00000467885 MLH3Q9UHC1 1453 aa8.88□□□□□ -0.99
USP39-213ENST00000467885 C9orf84Q5VXU9 1444 aa8.88□□□□□ -0.99
USP39-213ENST00000467885 PPRC1Q5VV67 1664 aaKnown RBP8.88□□□□□ -0.99
USP39-213ENST00000467885 DHX29Q7Z478 1369 aaKnown RBP8.87□□□□□ -0.99
USP39-213ENST00000467885 ABCC1P33527 1531 aa8.87□□□□□ -0.99
USP39-213ENST00000467885 SYCP2Q9BX26 1530 aa8.87□□□□□ -0.99
USP39-213ENST00000467885 ITSN2Q9NZM3 1697 aa8.87□□□□□ -0.99
USP39-213ENST00000467885 HFM1A2PYH4 1435 aa8.87□□□□□ -0.99
USP39-213ENST00000467885 POGZQ7Z3K3 1410 aa8.87□□□□□ -0.99
USP39-213ENST00000467885 RAB3GAP2Q9H2M9 1393 aa8.86□□□□□ -0.99
USP39-213ENST00000467885 ADGRL2O95490 1459 aa8.86□□□□□ -0.99
USP39-213ENST00000467885 C19orf67A6NJJ6 358 aa8.86□□□□□ -0.99
USP39-213ENST00000467885 DNMT1P26358 1616 aaKnown RBP8.86□□□□□ -0.99
USP39-213ENST00000467885 ZNF518AQ6AHZ1 1483 aa8.85□□□□□ -0.99
USP39-213ENST00000467885 KIF3BO15066 747 aa8.85□□□□□ -0.99
USP39-213ENST00000467885 KIF15Q9NS87 1388 aa8.85□□□□□ -0.99
USP39-213ENST00000467885 TRIM52Q96A61 297 aa8.84□□□□□ -0.99
USP39-213ENST00000467885 MPHOSPH9Q99550 1183 aa8.84□□□□□ -0.99
USP39-213ENST00000467885 ANKRD50Q9ULJ7 1429 aa8.84□□□□□ -0.99
USP39-213ENST00000467885 YEATS2Q9ULM3 1422 aa8.84□□□□□ -0.99
USP39-213ENST00000467885 SHANK2Q9UPX8 1470 aa8.83□□□□□ -1
USP39-213ENST00000467885 ACIN1Q9UKV3 1341 aaKnown RBP8.83□□□□□ -1
USP39-213ENST00000467885 TSPOAP1O95153 1857 aa8.83□□□□□ -1
USP39-213ENST00000467885 MAGI2Q86UL8 1455 aa8.83□□□□□ -1
USP39-213ENST00000467885 MAST1Q9Y2H9 1570 aa8.82□□□□□ -1
USP39-213ENST00000467885 ATP10AO60312 1499 aa8.82□□□□□ -1
USP39-213ENST00000467885 GGT6Q6P531 493 aa8.81□□□□□ -1
USP39-213ENST00000467885 KDM5CP41229 1560 aa8.81□□□□□ -1
USP39-213ENST00000467885 CHADLQ6NUI6 762 aa8.8□□□□□ -1
USP39-213ENST00000467885 CFAP74Q9C0B2 1584 aa8.8□□□□□ -1
USP39-213ENST00000467885 A2MP01023 1474 aa8.79□□□□□ -1
USP39-213ENST00000467885 NUP155O75694 1391 aa8.79□□□□□ -1
USP39-213ENST00000467885 ATP7AQ04656 1500 aa8.79□□□□□ -1
USP39-213ENST00000467885 KIDINS220Q9ULH0 1771 aa8.78□□□□□ -1
USP39-213ENST00000467885 FRMPD1Q5SYB0 1578 aa8.78□□□□□ -1
USP39-213ENST00000467885 DHX57Q6P158 1386 aaKnown RBP8.78□□□□□ -1
USP39-213ENST00000467885 GABBR2O75899 941 aa8.78□□□□□ -1
USP39-213ENST00000467885 PKD2Q13563 968 aa8.78□□□□□ -1
USP39-213ENST00000467885 KDM6BO15054 1643 aa8.78□□□□□ -1
USP39-213ENST00000467885 DUOX2Q9NRD8 1548 aa8.78□□□□□ -1
USP39-213ENST00000467885 RICTORQ6R327 1708 aa8.77□□□□□ -1
USP39-213ENST00000467885 ZMYM4Q5VZL5 1548 aa8.77□□□□□ -1.01
USP39-213ENST00000467885 ZFYVE16Q7Z3T8 1539 aa8.77□□□□□ -1.01
USP39-213ENST00000467885 CCER1Q8TC90 406 aaPredicted RBP8.77□□□□□ -1.01
USP39-213ENST00000467885 PRR29P0C7W0 189 aa8.76□□□□□ -1.01
USP39-213ENST00000467885 MLECQ14165 292 aa8.76□□□□□ -1.01
USP39-213ENST00000467885 ERBINQ96RT1 1412 aa8.76□□□□□ -1.01
USP39-213ENST00000467885 WASHC2CQ9Y4E1 1318 aa8.76□□□□□ -1.01
USP39-213ENST00000467885 INO80Q9ULG1 1556 aaPredicted RBP8.75□□□□□ -1.01
USP39-213ENST00000467885 SIN3AQ96ST3 1273 aa8.75□□□□□ -1.01
USP39-213ENST00000467885 ARID4BQ4LE39 1312 aaPredicted RBP8.75□□□□□ -1.01
USP39-213ENST00000467885 PLXNC1O60486 1568 aa8.74□□□□□ -1.01
USP39-213ENST00000467885 CROCC2H7BZ55 1655 aa8.73□□□□□ -1.01
USP39-213ENST00000467885 PZPP20742 1482 aa8.73□□□□□ -1.01
USP39-213ENST00000467885 CLSPNQ9HAW4 1339 aa8.73□□□□□ -1.01
USP39-213ENST00000467885 HECW2Q9P2P5 1572 aa8.73□□□□□ -1.01
USP39-213ENST00000467885 DIP2CQ9Y2E4 1556 aa8.73□□□□□ -1.01
USP39-213ENST00000467885 AGLP35573 1532 aa8.72□□□□□ -1.01
USP39-213ENST00000467885 FBXO31Q5XUX0 539 aaPredicted RBP8.72□□□□□ -1.01
USP39-213ENST00000467885 KANK1Q14678 1352 aa8.72□□□□□ -1.01
USP39-213ENST00000467885 ANKRD30BQ9BXX2 1392 aa8.72□□□□□ -1.01
USP39-213ENST00000467885 ABCA6Q8N139 1617 aa8.71□□□□□ -1.02
USP39-213ENST00000467885 NEUROD1Q13562 356 aa8.7□□□□□ -1.02
USP39-213ENST00000467885 ZMYM3Q14202 1370 aa8.7□□□□□ -1.02
USP39-213ENST00000467885 PLA2R1Q13018 1463 aa8.7□□□□□ -1.02
USP39-213ENST00000467885 REREQ9P2R6 1566 aa8.69□□□□□ -1.02
USP39-213ENST00000467885 ADGBQ8N7X0 1667 aa8.69□□□□□ -1.02
USP39-213ENST00000467885 CEBPAP49715 358 aaPredicted RBP8.69□□□□□ -1.02
USP39-213ENST00000467885 VWDEQ8N2E2 1590 aa8.68□□□□□ -1.02
USP39-213ENST00000467885 GCC2Q8IWJ2 1684 aa8.68□□□□□ -1.02
USP39-213ENST00000467885 IDI1Q13907 227 aa8.67□□□□□ -1.02
USP39-213ENST00000467885 LHX8Q68G74 356 aa8.67□□□□□ -1.02
USP39-213ENST00000467885 KDM5DQ9BY66 1539 aa8.67□□□□□ -1.02
USP39-213ENST00000467885 ESF1Q9H501 851 aaKnown RBP8.67□□□□□ -1.02
USP39-213ENST00000467885 TIMELESSQ9UNS1 1208 aa8.67□□□□□ -1.02
USP39-213ENST00000467885 SIGLEC1Q9BZZ2 1709 aa8.66□□□□□ -1.02
USP39-213ENST00000467885 MROH1Q8NDA8 1641 aa8.66□□□□□ -1.02
USP39-213ENST00000467885 FAM135AQ9P2D6 1515 aa8.66□□□□□ -1.02
USP39-213ENST00000467885 PTPRTO14522 1441 aa8.66□□□□□ -1.02
USP39-213ENST00000467885 ARHGAP31Q2M1Z3 1444 aa8.66□□□□□ -1.02
USP39-213ENST00000467885 KDM4FA0A1W2PPD8 638 aa8.66□□□□□ -1.02
USP39-213ENST00000467885 PPP1R15AO75807 674 aaPredicted RBP8.66□□□□□ -1.02
USP39-213ENST00000467885 LMTK2Q8IWU2 1503 aa8.65□□□□□ -1.02
USP39-213ENST00000467885 L3MBTL2Q969R5 705 aa8.65□□□□□ -1.02
USP39-213ENST00000467885 FARP1Q9Y4F1 1045 aaPredicted RBP8.65□□□□□ -1.02
USP39-213ENST00000467885 EIF2AK4Q9P2K8 1649 aaKnown RBP8.65□□□□□ -1.03
USP39-213ENST00000467885 UNC13BO14795 1591 aa8.65□□□□□ -1.03
USP39-213ENST00000467885 ARHGEF40Q8TER5 1519 aa8.64□□□□□ -1.03
USP39-213ENST00000467885 NPATQ14207 1427 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 115.1 ms