RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-211ENST00000466538 HOXB3P14651 431 aaPredicted RBP8.97□□□□□ -0.97
CDC42BPA-211ENST00000466538 IL27Q8NEV9 243 aa8.97□□□□□ -0.97
CDC42BPA-211ENST00000466538 RBM33Q96EV2 1170 aaKnown RBP8.97□□□□□ -0.97
CDC42BPA-211ENST00000466538 GPR153Q6NV75 609 aa8.96□□□□□ -0.98
CDC42BPA-211ENST00000466538 ZDHHC16Q969W1 377 aa8.96□□□□□ -0.98
CDC42BPA-211ENST00000466538 ARSIQ5FYB1 569 aa8.95□□□□□ -0.98
CDC42BPA-211ENST00000466538 C6orf132Q5T0Z8 1188 aa8.95□□□□□ -0.98
CDC42BPA-211ENST00000466538 DDRGK1Q96HY6 314 aa8.95□□□□□ -0.98
CDC42BPA-211ENST00000466538 PSDA5PKW4 1024 aaPredicted RBP8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 SNPHO15079 494 aa8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 NUDT7P0C024 238 aa8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 TSR1Q2NL82 804 aaKnown RBP8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 ZNF710Q8N1W2 664 aa8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 ZNF454Q8N9F8 522 aa8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 CDHR5Q9HBB8 845 aa8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 TIMELESSQ9UNS1 1208 aa8.94□□□□□ -0.98
CDC42BPA-211ENST00000466538 PARP9Q8IXQ6 854 aa8.93□□□□□ -0.98
CDC42BPA-211ENST00000466538 OATP04181 439 aa8.92□□□□□ -0.98
CDC42BPA-211ENST00000466538 RBM27Q9P2N5 1060 aaKnown RBP8.92□□□□□ -0.98
CDC42BPA-211ENST00000466538 FAM117AQ9C073 453 aa8.91□□□□□ -0.98
CDC42BPA-211ENST00000466538 TTLL12Q14166 644 aaPredicted RBP8.9□□□□□ -0.98
CDC42BPA-211ENST00000466538 CLCN1P35523 988 aa8.89□□□□□ -0.99
CDC42BPA-211ENST00000466538 KHSRPQ92945 711 aaKnown RBP eCLIP8.89□□□□□ -0.99
CDC42BPA-211ENST00000466538 TTC13Q8NBP0 860 aa8.88□□□□□ -0.99
CDC42BPA-211ENST00000466538 TMUB1Q9BVT8 246 aa8.88□□□□□ -0.99
CDC42BPA-211ENST00000466538 ADAM33Q9BZ11 813 aa8.88□□□□□ -0.99
CDC42BPA-211ENST00000466538 GOPCQ9HD26 462 aa8.88□□□□□ -0.99
CDC42BPA-211ENST00000466538 PPP4R3BQ5MIZ7 849 aa8.87□□□□□ -0.99
CDC42BPA-211ENST00000466538 C14orf37Q86TY3 774 aa8.87□□□□□ -0.99
CDC42BPA-211ENST00000466538 LHX6Q9UPM6 363 aa8.87□□□□□ -0.99
CDC42BPA-211ENST00000466538 PLEKHG3A1L390 1219 aa8.86□□□□□ -0.99
CDC42BPA-211ENST00000466538 PRSS12P56730 875 aa8.86□□□□□ -0.99
CDC42BPA-211ENST00000466538 GIGYF2Q6Y7W6 1299 aaKnown RBP8.86□□□□□ -0.99
CDC42BPA-211ENST00000466538 GPCPD1Q9NPB8 672 aa8.86□□□□□ -0.99
CDC42BPA-211ENST00000466538 HOXB1P14653 301 aaPredicted RBP8.85□□□□□ -0.99
CDC42BPA-211ENST00000466538 BCL2L12Q9HB09 334 aa8.85□□□□□ -0.99
CDC42BPA-211ENST00000466538 PADI6Q6TGC4 694 aa8.84□□□□□ -0.99
CDC42BPA-211ENST00000466538 METTL3Q86U44 580 aaKnown RBP8.84□□□□□ -0.99
CDC42BPA-211ENST00000466538 PXYLP1Q8TE99 480 aa8.84□□□□□ -0.99
CDC42BPA-211ENST00000466538 CDCA7LQ96GN5 454 aa8.84□□□□□ -0.99
CDC42BPA-211ENST00000466538 ADGRG1Q9Y653 693 aa8.84□□□□□ -0.99
CDC42BPA-211ENST00000466538 REPIN1Q9BWE0 567 aaKnown RBP8.83□□□□□ -1
CDC42BPA-211ENST00000466538 MS4A1P11836 297 aa8.82□□□□□ -1
CDC42BPA-211ENST00000466538 PTPREP23469 700 aa8.82□□□□□ -1
CDC42BPA-211ENST00000466538 MDM2Q00987 491 aaPredicted RBP8.82□□□□□ -1
CDC42BPA-211ENST00000466538 RBM46Q8TBY0 533 aaKnown RBP8.82□□□□□ -1
CDC42BPA-211ENST00000466538 PHOX2BQ99453 314 aa8.82□□□□□ -1
CDC42BPA-211ENST00000466538 SSTR3P32745 418 aaPredicted RBP8.81□□□□□ -1
CDC42BPA-211ENST00000466538 PPP1R3GB7ZBB8 358 aa8.8□□□□□ -1
CDC42BPA-211ENST00000466538 ONECUT3O60422 494 aaPredicted RBP8.79□□□□□ -1
CDC42BPA-211ENST00000466538 RSPH6AQ9H0K4 717 aa8.79□□□□□ -1
CDC42BPA-211ENST00000466538 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.78□□□□□ -1
CDC42BPA-211ENST00000466538 FAM161AQ3B820 660 aa8.78□□□□□ -1
CDC42BPA-211ENST00000466538 FAM217BQ9NTX9 383 aaPredicted RBP8.78□□□□□ -1
CDC42BPA-211ENST00000466538 COL9A1P20849 921 aa8.77□□□□□ -1.01
CDC42BPA-211ENST00000466538 SH3D19Q5HYK7 790 aa8.76□□□□□ -1.01
CDC42BPA-211ENST00000466538 PACS2Q86VP3 889 aa8.76□□□□□ -1.01
CDC42BPA-211ENST00000466538 OTUD5Q96G74 571 aa8.76□□□□□ -1.01
CDC42BPA-211ENST00000466538 KCNH8Q96L42 1107 aa8.76□□□□□ -1.01
CDC42BPA-211ENST00000466538 PCMTD1Q96MG8 357 aaPredicted RBP8.76□□□□□ -1.01
CDC42BPA-211ENST00000466538 EYA1Q99502 592 aa8.76□□□□□ -1.01
CDC42BPA-211ENST00000466538 SKIV2LQ15477 1246 aaKnown RBP8.75□□□□□ -1.01
CDC42BPA-211ENST00000466538 DIXDC1Q155Q3 683 aa8.75□□□□□ -1.01
CDC42BPA-211ENST00000466538 BEGAINQ9BUH8 593 aa8.75□□□□□ -1.01
CDC42BPA-211ENST00000466538 TRIM6-TRIM34B2RNG4 842 aa8.74□□□□□ -1.01
CDC42BPA-211ENST00000466538 FAM198AQ9UFP1 575 aa8.74□□□□□ -1.01
CDC42BPA-211ENST00000466538 RCCD1A6NED2 376 aa8.73□□□□□ -1.01
CDC42BPA-211ENST00000466538 NBPF26B4DH59 902 aa8.73□□□□□ -1.01
CDC42BPA-211ENST00000466538 TSKSQ9UJT2 592 aa8.73□□□□□ -1.01
CDC42BPA-211ENST00000466538 FLIIQ13045 1269 aa8.72□□□□□ -1.01
CDC42BPA-211ENST00000466538 NUDT18Q6ZVK8 323 aa8.72□□□□□ -1.01
CDC42BPA-211ENST00000466538 TATDN2Q93075 761 aa8.72□□□□□ -1.01
CDC42BPA-211ENST00000466538 DNAJB2P25686 324 aa8.71□□□□□ -1.02
CDC42BPA-211ENST00000466538 LHX8Q68G74 356 aa8.7□□□□□ -1.02
CDC42BPA-211ENST00000466538 SULF1Q8IWU6 871 aa8.7□□□□□ -1.02
CDC42BPA-211ENST00000466538 NLRP7Q8WX94 980 aa8.7□□□□□ -1.02
CDC42BPA-211ENST00000466538 PNMA3Q9UL41 463 aa8.7□□□□□ -1.02
CDC42BPA-211ENST00000466538 KCNK17Q96T54 332 aa8.69□□□□□ -1.02
CDC42BPA-211ENST00000466538 SLC4A5Q9BY07 1137 aa8.69□□□□□ -1.02
CDC42BPA-211ENST00000466538 ZMYND15Q9H091 742 aa8.69□□□□□ -1.02
CDC42BPA-211ENST00000466538 ARHGAP33O14559 1287 aa8.68□□□□□ -1.02
CDC42BPA-211ENST00000466538 ERBB3P21860 1342 aa8.67□□□□□ -1.02
CDC42BPA-211ENST00000466538 ZBED2Q9BTP6 218 aa8.67□□□□□ -1.02
CDC42BPA-211ENST00000466538 TMEM134Q9H6X4 195 aa8.67□□□□□ -1.02
CDC42BPA-211ENST00000466538 CD46P15529 392 aa8.66□□□□□ -1.02
CDC42BPA-211ENST00000466538 PBX2P40425 430 aa8.66□□□□□ -1.02
CDC42BPA-211ENST00000466538 MYSM1Q5VVJ2 828 aa8.66□□□□□ -1.02
CDC42BPA-211ENST00000466538 TBC1D2Q9BYX2 928 aa8.66□□□□□ -1.02
CDC42BPA-211ENST00000466538 PROX2Q3B8N5 592 aa8.65□□□□□ -1.02
CDC42BPA-211ENST00000466538 RSPH4AQ5TD94 716 aa8.65□□□□□ -1.02
CDC42BPA-211ENST00000466538 KIAA1468Q9P260 1216 aa8.65□□□□□ -1.02
CDC42BPA-211ENST00000466538 RABGEF1Q9UJ41 708 aa8.65□□□□□ -1.02
CDC42BPA-211ENST00000466538 C3orf80F5H4A9 247 aa8.64□□□□□ -1.03
CDC42BPA-211ENST00000466538 POLR3EQ9NVU0 708 aa8.64□□□□□ -1.03
CDC42BPA-211ENST00000466538 TUSC1Q2TAM9 212 aa8.63□□□□□ -1.03
CDC42BPA-211ENST00000466538 VARS2Q5ST30 1063 aaKnown RBP8.63□□□□□ -1.03
CDC42BPA-211ENST00000466538 PROCA1Q8NCQ7 364 aaPredicted RBP8.63□□□□□ -1.03
CDC42BPA-211ENST00000466538 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.63□□□□□ -1.03
CDC42BPA-211ENST00000466538 DDX11L8A8MPP1 907 aa8.62□□□□□ -1.03
CDC42BPA-211ENST00000466538 ST18O60284 1047 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms