RNA–Protein interactions for RNA: ENST00000465560.5

PTCD3-206, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 747 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-206ENST00000465560 CLTCQ00610 1675 aaKnown RBP30.88■■■□□ 2.53
PTCD3-206ENST00000465560 GGT6Q6P531 493 aa30.88■■■□□ 2.53
PTCD3-206ENST00000465560 CNTLNQ9NXG0 1405 aa30.88■■■□□ 2.53
PTCD3-206ENST00000465560 FAM135AQ9P2D6 1515 aa30.88■■■□□ 2.53
PTCD3-206ENST00000465560 DEPDC5O75140 1603 aa30.86■■■□□ 2.53
PTCD3-206ENST00000465560 MROH1Q8NDA8 1641 aa30.86■■■□□ 2.53
PTCD3-206ENST00000465560 PPP6R1Q9UPN7 881 aa30.85■■■□□ 2.53
PTCD3-206ENST00000465560 C3P01024 1663 aa30.84■■■□□ 2.53
PTCD3-206ENST00000465560 ESF1Q9H501 851 aaKnown RBP30.83■■■□□ 2.53
PTCD3-206ENST00000465560 ANKRD50Q9ULJ7 1429 aa30.82■■■□□ 2.52
PTCD3-206ENST00000465560 PRDM15P57071 1507 aaPredicted RBP30.82■■■□□ 2.52
PTCD3-206ENST00000465560 KDM5DQ9BY66 1539 aa30.82■■■□□ 2.52
PTCD3-206ENST00000465560 ZC3H13Q5T200 1668 aaKnown RBP30.81■■■□□ 2.52
PTCD3-206ENST00000465560 GCC2Q8IWJ2 1684 aa30.79■■■□□ 2.52
PTCD3-206ENST00000465560 CEP152O94986 1710 aa30.76■■■□□ 2.51
PTCD3-206ENST00000465560 ABCC3O15438 1527 aa30.74■■■□□ 2.51
PTCD3-206ENST00000465560 UNC13BO14795 1591 aa30.71■■■□□ 2.51
PTCD3-206ENST00000465560 ZMYM3Q14202 1370 aa30.71■■■□□ 2.51
PTCD3-206ENST00000465560 WASHC2CQ9Y4E1 1318 aa30.71■■■□□ 2.51
PTCD3-206ENST00000465560 VWDEQ8N2E2 1590 aa30.7■■■□□ 2.5
PTCD3-206ENST00000465560 CEBPAP49715 358 aaPredicted RBP30.69■■■□□ 2.5
PTCD3-206ENST00000465560 PLPPR3Q6T4P5 718 aa30.69■■■□□ 2.5
PTCD3-206ENST00000465560 NAIPQ13075 1403 aa30.69■■■□□ 2.5
PTCD3-206ENST00000465560 CAMSAP1Q5T5Y3 1602 aa30.69■■■□□ 2.5
PTCD3-206ENST00000465560 HFM1A2PYH4 1435 aa30.68■■■□□ 2.5
PTCD3-206ENST00000465560 SETD1BQ9UPS6 1966 aaKnown RBP30.68■■■□□ 2.5
PTCD3-206ENST00000465560 KANK1Q14678 1352 aa30.66■■■□□ 2.5
PTCD3-206ENST00000465560 LMTK2Q8IWU2 1503 aa30.63■■■□□ 2.49
PTCD3-206ENST00000465560 PREX1Q8TCU6 1659 aa30.63■■■□□ 2.49
PTCD3-206ENST00000465560 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.63■■■□□ 2.499e-7■□□□□ 10.7
PTCD3-206ENST00000465560 PZPP20742 1482 aa30.63■■■□□ 2.49
PTCD3-206ENST00000465560 NPATQ14207 1427 aa30.62■■■□□ 2.49
PTCD3-206ENST00000465560 IQGAP3Q86VI3 1631 aa30.58■■■□□ 2.49
PTCD3-206ENST00000465560 TET3O43151 1660 aa30.55■■■□□ 2.48
PTCD3-206ENST00000465560 CFAP65Q6ZU64 1925 aaKnown RBP30.55■■■□□ 2.48
PTCD3-206ENST00000465560 EFCAB6Q5THR3 1501 aa30.55■■■□□ 2.48
PTCD3-206ENST00000465560 ARHGAP31Q2M1Z3 1444 aa30.55■■■□□ 2.48
PTCD3-206ENST00000465560 LMTK3Q96Q04 1460 aa30.53■■■□□ 2.48
PTCD3-206ENST00000465560 MYO3AQ8NEV4 1616 aa30.52■■■□□ 2.48
PTCD3-206ENST00000465560 SPATA31D1Q6ZQQ2 1576 aa30.51■■■□□ 2.47
PTCD3-206ENST00000465560 UHRF1BP1Q6BDS2 1440 aa30.49■■■□□ 2.47
PTCD3-206ENST00000465560 NUP155O75694 1391 aa30.49■■■□□ 2.47
PTCD3-206ENST00000465560 ERVK-7P63135 1459 aa30.48■■■□□ 2.47
PTCD3-206ENST00000465560 ZNF142P52746 1687 aaPredicted RBP30.47■■■□□ 2.47
PTCD3-206ENST00000465560 FBXO31Q5XUX0 539 aaPredicted RBP30.47■■■□□ 2.47
PTCD3-206ENST00000465560 TNRQ92752 1358 aa30.44■■■□□ 2.46
PTCD3-206ENST00000465560 E9PCH4 1651 aa30.44■■■□□ 2.46
PTCD3-206ENST00000465560 RPRD2Q5VT52 1461 aaKnown RBP30.44■■■□□ 2.46
PTCD3-206ENST00000465560 SETD5Q9C0A6 1442 aa30.43■■■□□ 2.46
PTCD3-206ENST00000465560 CEP170BQ9Y4F5 1589 aaPredicted RBP30.41■■■□□ 2.46
PTCD3-206ENST00000465560 NLRP1Q9C000 1473 aa30.37■■■□□ 2.45
PTCD3-206ENST00000465560 NOS1P29475 1434 aa30.35■■■□□ 2.45
PTCD3-206ENST00000465560 A2ML1A8K2U0 1454 aa30.35■■■□□ 2.45
PTCD3-206ENST00000465560 SYNMO15061 1565 aa30.35■■■□□ 2.45
PTCD3-206ENST00000465560 TRIM52Q96A61 297 aa30.34■■■□□ 2.45
PTCD3-206ENST00000465560 RAB3GAP2Q9H2M9 1393 aa30.33■■■□□ 2.45
PTCD3-206ENST00000465560 ACIN1Q9UKV3 1341 aaKnown RBP30.31■■■□□ 2.44
PTCD3-206ENST00000465560 HSPA2P54652 639 aa30.3■■■□□ 2.44
PTCD3-206ENST00000465560 SPHKAPQ2M3C7 1700 aa30.3■■■□□ 2.44
PTCD3-206ENST00000465560 UBR1Q8IWV7 1749 aa30.26■■■□□ 2.43
PTCD3-206ENST00000465560 UGGT1Q9NYU2 1555 aa30.26■■■□□ 2.43
PTCD3-206ENST00000465560 PIK3C2BO00750 1634 aa30.25■■■□□ 2.43
PTCD3-206ENST00000465560 KDM5AP29375 1690 aaKnown RBP30.23■■■□□ 2.43
PTCD3-206ENST00000465560 TRIM26Q12899 539 aaPredicted RBP30.23■■■□□ 2.43
PTCD3-206ENST00000465560 STRCQ7RTU9 1775 aa30.23■■■□□ 2.43
PTCD3-206ENST00000465560 SLC4A1APQ9BWU0 796 aaKnown RBP30.22■■■□□ 2.43
PTCD3-206ENST00000465560 HRCP23327 699 aa30.21■■■□□ 2.43
PTCD3-206ENST00000465560 PLA2R1Q13018 1463 aa30.2■■■□□ 2.43
PTCD3-206ENST00000465560 PTPRTO14522 1441 aa30.19■■■□□ 2.42
PTCD3-206ENST00000465560 PKD2Q13563 968 aa30.18■■■□□ 2.42
PTCD3-206ENST00000465560 SLC52A1Q9NWF4 448 aa30.18■■■□□ 2.42
PTCD3-206ENST00000465560 ADGRB3O60242 1522 aa30.17■■■□□ 2.42
PTCD3-206ENST00000465560 TRPM2O94759 1503 aa30.17■■■□□ 2.42
PTCD3-206ENST00000465560 IDI1Q13907 227 aa30.16■■■□□ 2.42
PTCD3-206ENST00000465560 MPHOSPH9Q99550 1183 aa30.15■■■□□ 2.42
PTCD3-206ENST00000465560 POLR1AO95602 1720 aaPredicted RBP30.15■■■□□ 2.42
PTCD3-206ENST00000465560 MYO5BQ9ULV0 1848 aa30.15■■■□□ 2.42
PTCD3-206ENST00000465560 THEMISQ8N1K5 641 aaPredicted RBP30.14■■■□□ 2.42
PTCD3-206ENST00000465560 TMEM131LA2VDJ0 1609 aa30.11■■■□□ 2.41
PTCD3-206ENST00000465560 CLTCL1P53675 1640 aa30.1■■■□□ 2.41
PTCD3-206ENST00000465560 SLIT1O75093 1534 aa30.07■■■□□ 2.4
PTCD3-206ENST00000465560 ARHGAP23Q9P227 1491 aa30.06■■■□□ 2.4
PTCD3-206ENST00000465560 STAG3Q9UJ98 1225 aa30.06■■■□□ 2.4
PTCD3-206ENST00000465560 KIF1BO60333 1816 aa30.06■■■□□ 2.4
PTCD3-206ENST00000465560 FOXD1Q16676 465 aa30.04■■■□□ 2.4
PTCD3-206ENST00000465560 NEURL4Q96JN8 1562 aa30.03■■■□□ 2.4
PTCD3-206ENST00000465560 NCKAP5LQ9HCH0 1330 aa30.01■■■□□ 2.4
PTCD3-206ENST00000465560 TMEM2Q9UHN6 1383 aa30.01■■■□□ 2.39
PTCD3-206ENST00000465560 ANKLE2Q86XL3 938 aa29.99■■■□□ 2.39
PTCD3-206ENST00000465560 DMRT2Q9Y5R5 561 aa29.98■■■□□ 2.39
PTCD3-206ENST00000465560 SCAF11Q99590 1463 aaKnown RBP29.97■■■□□ 2.39
PTCD3-206ENST00000465560 MED14O60244 1454 aa29.96■■■□□ 2.39
PTCD3-206ENST00000465560 IQGAP1P46940 1657 aa29.95■■■□□ 2.39
PTCD3-206ENST00000465560 CHGAP10645 457 aaKnown RBP29.95■■■□□ 2.39
PTCD3-206ENST00000465560 CCDC144AA2RUR9 1427 aa29.94■■■□□ 2.38
PTCD3-206ENST00000465560 ZFYVE9O95405 1425 aa29.93■■■□□ 2.38
PTCD3-206ENST00000465560 EID1Q9Y6B2 187 aa29.91■■■□□ 2.38
PTCD3-206ENST00000465560 NPHP4O75161 1426 aaPredicted RBP29.9■■■□□ 2.38
PTCD3-206ENST00000465560 RIMS2Q9UQ26 1411 aa29.9■■■□□ 2.38
PTCD3-206ENST00000465560 LTKP29376 864 aa29.9■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms