RNA–Protein interactions for RNA: ENST00000462165.2

CBX3-205, Transcript of chromobox 3, humanhuman

TSL 3

Gene CBX3, Length 949 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-205ENST00000462165 UBAP1LF5GYI3 381 aa17.6■□□□□ 0.41
CBX3-205ENST00000462165 A2ML1A8K2U0 1454 aa17.6■□□□□ 0.41
CBX3-205ENST00000462165 EHBP1L1Q8N3D4 1523 aa17.6■□□□□ 0.41
CBX3-205ENST00000462165 ZNF644Q9H582 1327 aaPredicted RBP17.58■□□□□ 0.4
CBX3-205ENST00000462165 POLR1AO95602 1720 aaPredicted RBP17.58■□□□□ 0.4
CBX3-205ENST00000462165 DHX29Q7Z478 1369 aaKnown RBP17.56■□□□□ 0.4
CBX3-205ENST00000462165 CEP162Q5TB80 1403 aa17.55■□□□□ 0.4
CBX3-205ENST00000462165 FAM135AQ9P2D6 1515 aa17.55■□□□□ 0.4
CBX3-205ENST00000462165 NEURL4Q96JN8 1562 aa17.53■□□□□ 0.4
CBX3-205ENST00000462165 KDM5DQ9BY66 1539 aa17.52■□□□□ 0.4
CBX3-205ENST00000462165 PZPP20742 1482 aa17.52■□□□□ 0.4
CBX3-205ENST00000462165 TNRQ92752 1358 aa17.52■□□□□ 0.39
CBX3-205ENST00000462165 CCDC141Q6ZP82 1450 aa17.51■□□□□ 0.39
CBX3-205ENST00000462165 CPS1P31327 1500 aa17.51■□□□□ 0.39
CBX3-205ENST00000462165 KIF3BO15066 747 aa17.5■□□□□ 0.39
CBX3-205ENST00000462165 FBXO31Q5XUX0 539 aaPredicted RBP17.49■□□□□ 0.39
CBX3-205ENST00000462165 RSPH4AQ5TD94 716 aa17.48■□□□□ 0.39
CBX3-205ENST00000462165 CAMSAP2Q08AD1 1489 aa17.48■□□□□ 0.39
CBX3-205ENST00000462165 SHANK2Q9UPX8 1470 aa17.48■□□□□ 0.39
CBX3-205ENST00000462165 NCOA2Q15596 1464 aa17.47■□□□□ 0.39
CBX3-205ENST00000462165 NLRP1Q9C000 1473 aa17.46■□□□□ 0.39
CBX3-205ENST00000462165 WASHC2CQ9Y4E1 1318 aa17.46■□□□□ 0.38
CBX3-205ENST00000462165 ARHGEF5Q12774 1597 aa17.45■□□□□ 0.38
CBX3-205ENST00000462165 TOM1O60784 492 aa17.45■□□□□ 0.38
CBX3-205ENST00000462165 DEPDC5O75140 1603 aa17.45■□□□□ 0.38
CBX3-205ENST00000462165 MIA2Q96PC5 1412 aa17.45■□□□□ 0.38
CBX3-205ENST00000462165 VWDEQ8N2E2 1590 aa17.45■□□□□ 0.38
CBX3-205ENST00000462165 MED14O60244 1454 aa17.44■□□□□ 0.38
CBX3-205ENST00000462165 ANKLE2Q86XL3 938 aa17.44■□□□□ 0.38
CBX3-205ENST00000462165 THEMISQ8N1K5 641 aaPredicted RBP17.44■□□□□ 0.38
CBX3-205ENST00000462165 MED1Q15648 1581 aaPredicted RBP17.44■□□□□ 0.38
CBX3-205ENST00000462165 UGGT1Q9NYU2 1555 aa17.44■□□□□ 0.38
CBX3-205ENST00000462165 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.43■□□□□ 0.38
CBX3-205ENST00000462165 HSPA1LP34931 641 aa17.43■□□□□ 0.38
CBX3-205ENST00000462165 SCAF1Q9H7N4 1312 aaKnown RBP17.42■□□□□ 0.38
CBX3-205ENST00000462165 RNF17Q9BXT8 1623 aaKnown RBP17.41■□□□□ 0.38
CBX3-205ENST00000462165 PIP4K2BP78356 416 aa17.41■□□□□ 0.38
CBX3-205ENST00000462165 ZC3H13Q5T200 1668 aaKnown RBP17.41■□□□□ 0.38
CBX3-205ENST00000462165 NPHP4O75161 1426 aaPredicted RBP17.4■□□□□ 0.38
CBX3-205ENST00000462165 IQGAP1P46940 1657 aa17.4■□□□□ 0.38
CBX3-205ENST00000462165 TSPY4P0CV99 314 aa17.39■□□□□ 0.37
CBX3-205ENST00000462165 TSPY10P0CW01 314 aa17.39■□□□□ 0.37
CBX3-205ENST00000462165 MAST1Q9Y2H9 1570 aa17.39■□□□□ 0.37
CBX3-205ENST00000462165 ALKQ9UM73 1620 aa17.39■□□□□ 0.37
CBX3-205ENST00000462165 ABCC3O15438 1527 aa17.37■□□□□ 0.37
CBX3-205ENST00000462165 EIF2AK4Q9P2K8 1649 aaKnown RBP17.37■□□□□ 0.37
CBX3-205ENST00000462165 STRCP1A6NGW2 1772 aa17.37■□□□□ 0.37
CBX3-205ENST00000462165 SYNMO15061 1565 aa17.34■□□□□ 0.37
CBX3-205ENST00000462165 CFAP65Q6ZU64 1925 aaKnown RBP17.33■□□□□ 0.37
CBX3-205ENST00000462165 MROH1Q8NDA8 1641 aa17.33■□□□□ 0.37
CBX3-205ENST00000462165 ERVK-7P63135 1459 aa17.33■□□□□ 0.37
CBX3-205ENST00000462165 CEP152O94986 1710 aa17.33■□□□□ 0.36
CBX3-205ENST00000462165 UBR1Q8IWV7 1749 aa17.33■□□□□ 0.36
CBX3-205ENST00000462165 LRRC7Q96NW7 1537 aa17.32■□□□□ 0.36
CBX3-205ENST00000462165 LRRC9Q6ZRR7 1453 aa17.32■□□□□ 0.36
CBX3-205ENST00000462165 VPS8Q8N3P4 1428 aa17.28■□□□□ 0.36
CBX3-205ENST00000462165 DUOX2Q9NRD8 1548 aa17.27■□□□□ 0.36
CBX3-205ENST00000462165 SLIT1O75093 1534 aa17.26■□□□□ 0.35
CBX3-205ENST00000462165 MAP3K1Q13233 1512 aa17.26■□□□□ 0.35
CBX3-205ENST00000462165 SCAF11Q99590 1463 aaKnown RBP17.25■□□□□ 0.35
CBX3-205ENST00000462165 ARHGAP23Q9P227 1491 aa17.25■□□□□ 0.35
CBX3-205ENST00000462165 MYOM3Q5VTT5 1437 aa17.25■□□□□ 0.35
CBX3-205ENST00000462165 XIRP1Q702N8 1843 aaKnown RBP17.25■□□□□ 0.35
CBX3-205ENST00000462165 PRDM15P57071 1507 aaPredicted RBP17.24■□□□□ 0.35
CBX3-205ENST00000462165 ARHGAP31Q2M1Z3 1444 aa17.23■□□□□ 0.35
CBX3-205ENST00000462165 LTKP29376 864 aa17.22■□□□□ 0.35
CBX3-205ENST00000462165 KANK4Q5T7N3 995 aaPredicted RBP17.22■□□□□ 0.35
CBX3-205ENST00000462165 CROCC2H7BZ55 1655 aa17.22■□□□□ 0.35
CBX3-205ENST00000462165 PIK3C2BO00750 1634 aa17.2■□□□□ 0.34
CBX3-205ENST00000462165 ERBINQ96RT1 1412 aa17.2■□□□□ 0.34
CBX3-205ENST00000462165 KIF15Q9NS87 1388 aa17.19■□□□□ 0.34
CBX3-205ENST00000462165 TXNDC2Q86VQ3 553 aa17.19■□□□□ 0.34
CBX3-205ENST00000462165 KDM5AP29375 1690 aaKnown RBP17.19■□□□□ 0.34
CBX3-205ENST00000462165 ABCC5O15440 1437 aa17.16■□□□□ 0.34
CBX3-205ENST00000462165 EID1Q9Y6B2 187 aa17.16■□□□□ 0.34
CBX3-205ENST00000462165 PTPN23Q9H3S7 1636 aa17.16■□□□□ 0.34
CBX3-205ENST00000462165 TMEM2Q9UHN6 1383 aa17.15■□□□□ 0.34
CBX3-205ENST00000462165 FAM135BQ49AJ0 1406 aa17.13■□□□□ 0.33
CBX3-205ENST00000462165 LMTK2Q8IWU2 1503 aa17.13■□□□□ 0.33
CBX3-205ENST00000462165 RRP7BPQ9NSQ0 103 aa17.13■□□□□ 0.33
CBX3-205ENST00000462165 EFCAB6Q5THR3 1501 aa17.12■□□□□ 0.33
CBX3-205ENST00000462165 RGS17Q9UGC6 210 aaPredicted RBP17.12■□□□□ 0.33
CBX3-205ENST00000462165 KANK1Q14678 1352 aa17.12■□□□□ 0.33
CBX3-205ENST00000462165 DAPK1P53355 1430 aa17.12■□□□□ 0.33
CBX3-205ENST00000462165 LOC105371045A0A1W2PR82 267 aa17.11■□□□□ 0.33
CBX3-205ENST00000462165 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.11■□□□□ 0.335e-18■■■■□ 25.1
CBX3-205ENST00000462165 TET3O43151 1660 aa17.1■□□□□ 0.33
CBX3-205ENST00000462165 STAG3Q9UJ98 1225 aa17.1■□□□□ 0.33
CBX3-205ENST00000462165 TMEM94Q12767 1356 aa17.09■□□□□ 0.33
CBX3-205ENST00000462165 ROBO1Q9Y6N7 1651 aa17.08■□□□□ 0.32
CBX3-205ENST00000462165 KCNA6P17658 529 aa17.08■□□□□ 0.32
CBX3-205ENST00000462165 IDI1Q13907 227 aa17.08■□□□□ 0.32
CBX3-205ENST00000462165 NWD1Q149M9 1564 aa17.06■□□□□ 0.32
CBX3-205ENST00000462165 ADGRB3O60242 1522 aa17.06■□□□□ 0.32
CBX3-205ENST00000462165 NOS1P29475 1434 aa17.06■□□□□ 0.32
CBX3-205ENST00000462165 FGD6Q6ZV73 1430 aa17.06■□□□□ 0.32
CBX3-205ENST00000462165 ANKRD30AQ9BXX3 1397 aa17.05■□□□□ 0.32
CBX3-205ENST00000462165 NKTRP30414 1462 aaKnown RBP17.05■□□□□ 0.32
CBX3-205ENST00000462165 SLC26A8Q96RN1 970 aa17.04■□□□□ 0.32
CBX3-205ENST00000462165 PROSER2Q86WR7 435 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 128.8 ms