RNA–Protein interactions for RNA: ENST00000449504.5

HDLBP-222, Transcript of high density lipoprotein binding protein, human

TSL 5

Gene HDLBP, Length 566 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDLBP-222	ENST00000449504	VWDE	Q8N2E2	1590 aa		11.89	□□□□□ -0.51
HDLBP-222	ENST00000449504	NPHP4	O75161	1426 aa	Predicted RBP	11.89	□□□□□ -0.51
HDLBP-222	ENST00000449504	ATP7A	Q04656	1500 aa		11.89	□□□□□ -0.51
HDLBP-222	ENST00000449504	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.88	□□□□□ -0.51
HDLBP-222	ENST00000449504	POLR1A	O95602	1720 aa	Predicted RBP	11.88	□□□□□ -0.51
HDLBP-222	ENST00000449504	LRRC7	Q96NW7	1537 aa		11.86	□□□□□ -0.51
HDLBP-222	ENST00000449504	LRRIQ1	Q96JM4	1722 aa		11.86	□□□□□ -0.51
HDLBP-222	ENST00000449504	KIF3B	O15066	747 aa		11.86	□□□□□ -0.51
HDLBP-222	ENST00000449504	PLXNC1	O60486	1568 aa		11.86	□□□□□ -0.51
HDLBP-222	ENST00000449504	CDC42BPA	Q5VT25	1732 aa		11.86	□□□□□ -0.51
HDLBP-222	ENST00000449504	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.85	□□□□□ -0.51
HDLBP-222	ENST00000449504	WASHC2C	Q9Y4E1	1318 aa		11.85	□□□□□ -0.51
HDLBP-222	ENST00000449504	FAM135A	Q9P2D6	1515 aa		11.84	□□□□□ -0.51
HDLBP-222	ENST00000449504	MIA2	Q96PC5	1412 aa		11.83	□□□□□ -0.52
HDLBP-222	ENST00000449504	KIAA1107	Q9UPP5	1409 aa		11.83	□□□□□ -0.52
HDLBP-222	ENST00000449504	UGGT1	Q9NYU2	1555 aa		11.83	□□□□□ -0.52
HDLBP-222	ENST00000449504	MED14	O60244	1454 aa		11.83	□□□□□ -0.52
HDLBP-222	ENST00000449504	CCDC18	Q5T9S5	1454 aa		11.83	□□□□□ -0.52
HDLBP-222	ENST00000449504	INO80	Q9ULG1	1556 aa	Predicted RBP	11.82	□□□□□ -0.52
HDLBP-222	ENST00000449504	ZNF644	Q9H582	1327 aa	Predicted RBP	11.82	□□□□□ -0.52
HDLBP-222	ENST00000449504	PLEKHH2	Q8IVE3	1493 aa		11.82	□□□□□ -0.52
HDLBP-222	ENST00000449504	RNF17	Q9BXT8	1623 aa	Known RBP	11.82	□□□□□ -0.52
HDLBP-222	ENST00000449504	CASKIN1	Q8WXD9	1431 aa		11.81	□□□□□ -0.52
HDLBP-222	ENST00000449504	PZP	P20742	1482 aa		11.81	□□□□□ -0.52
HDLBP-222	ENST00000449504	DHX29	Q7Z478	1369 aa	Known RBP	11.8	□□□□□ -0.52
HDLBP-222	ENST00000449504	CCNB3	Q8WWL7	1395 aa		11.8	□□□□□ -0.52
HDLBP-222	ENST00000449504	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.8	□□□□□ -0.52
HDLBP-222	ENST00000449504	STRCP1	A6NGW2	1772 aa		11.79	□□□□□ -0.52
HDLBP-222	ENST00000449504	IQGAP1	P46940	1657 aa		11.79	□□□□□ -0.52
HDLBP-222	ENST00000449504	NLRP1	Q9C000	1473 aa		11.79	□□□□□ -0.52
HDLBP-222	ENST00000449504	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
HDLBP-222	ENST00000449504	DEPDC5	O75140	1603 aa		11.78	□□□□□ -0.52
HDLBP-222	ENST00000449504	ADGB	Q8N7X0	1667 aa		11.78	□□□□□ -0.52
HDLBP-222	ENST00000449504	SETD1A	O15047	1707 aa	Known RBP	11.77	□□□□□ -0.52
HDLBP-222	ENST00000449504	TRIM52	Q96A61	297 aa		11.77	□□□□□ -0.53
HDLBP-222	ENST00000449504	KDM5D	Q9BY66	1539 aa		11.76	□□□□□ -0.53
HDLBP-222	ENST00000449504	SYNM	O15061	1565 aa		11.76	□□□□□ -0.53
HDLBP-222	ENST00000449504	TXNDC2	Q86VQ3	553 aa		11.76	□□□□□ -0.53
HDLBP-222	ENST00000449504	FAM135B	Q49AJ0	1406 aa		11.76	□□□□□ -0.53
HDLBP-222	ENST00000449504	RBM33	Q96EV2	1170 aa	Known RBP	11.75	□□□□□ -0.53
HDLBP-222	ENST00000449504	LTK	P29376	864 aa		11.74	□□□□□ -0.53
HDLBP-222	ENST00000449504	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.74	□□□□□ -0.53
HDLBP-222	ENST00000449504	MBD5	Q9P267	1494 aa		11.72	□□□□□ -0.53
HDLBP-222	ENST00000449504	MTUS2	Q5JR59	1369 aa		11.72	□□□□□ -0.53
HDLBP-222	ENST00000449504	TMEM94	Q12767	1356 aa		11.71	□□□□□ -0.53
HDLBP-222	ENST00000449504	MEX3C	Q5U5Q3	659 aa	Known RBP	11.71	□□□□□ -0.53
HDLBP-222	ENST00000449504	PROSER2	Q86WR7	435 aa	Predicted RBP	11.71	□□□□□ -0.53
HDLBP-222	ENST00000449504	EID1	Q9Y6B2	187 aa		11.71	□□□□□ -0.53
HDLBP-222	ENST00000449504	SCAF11	Q99590	1463 aa	Known RBP	11.7	□□□□□ -0.54
HDLBP-222	ENST00000449504	FYCO1	Q9BQS8	1478 aa		11.7	□□□□□ -0.54
HDLBP-222	ENST00000449504	ZC3H13	Q5T200	1668 aa	Known RBP	11.68	□□□□□ -0.54
HDLBP-222	ENST00000449504	JCAD	Q9P266	1359 aa		11.68	□□□□□ -0.54
HDLBP-222	ENST00000449504	ZNF772	Q68DY9	489 aa	Predicted RBP	11.68	□□□□□ -0.54
HDLBP-222	ENST00000449504	ROBO1	Q9Y6N7	1651 aa		11.68	□□□□□ -0.54
HDLBP-222	ENST00000449504	SLC26A8	Q96RN1	970 aa		11.67	□□□□□ -0.54
HDLBP-222	ENST00000449504	STAG3	Q9UJ98	1225 aa		11.67	□□□□□ -0.54
HDLBP-222	ENST00000449504	ERVK-7	P63135	1459 aa		11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	XIRP1	Q702N8	1843 aa	Known RBP	11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	TSPY4	P0CV99	314 aa		11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	TSPY10	P0CW01	314 aa		11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	KCNA6	P17658	529 aa		11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	RXRB	P28702	533 aa		11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	SLAIN2	Q9P270	581 aa		11.66	□□□□□ -0.54
HDLBP-222	ENST00000449504	CCDC141	Q6ZP82	1450 aa		11.65	□□□□□ -0.54
HDLBP-222	ENST00000449504	RSPH4A	Q5TD94	716 aa		11.65	□□□□□ -0.54
HDLBP-222	ENST00000449504	BCAN	Q96GW7	911 aa		11.65	□□□□□ -0.54
HDLBP-222	ENST00000449504	NCOA2	Q15596	1464 aa		11.64	□□□□□ -0.55
HDLBP-222	ENST00000449504	TIAM1	Q13009	1591 aa		11.63	□□□□□ -0.55
HDLBP-222	ENST00000449504	ABCC3	O15438	1527 aa		11.63	□□□□□ -0.55
HDLBP-222	ENST00000449504	MSH6	P52701	1360 aa		11.63	□□□□□ -0.55
HDLBP-222	ENST00000449504	UBR1	Q8IWV7	1749 aa		11.63	□□□□□ -0.55
HDLBP-222	ENST00000449504	ARHGAP23	Q9P227	1491 aa		11.63	□□□□□ -0.55
HDLBP-222	ENST00000449504	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.62	□□□□□ -0.55
HDLBP-222	ENST00000449504	NUTM2E	B1AL46	878 aa	Predicted RBP	11.62	□□□□□ -0.55
HDLBP-222	ENST00000449504	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.62	□□□□□ -0.55
HDLBP-222	ENST00000449504	LRRC9	Q6ZRR7	1453 aa		11.62	□□□□□ -0.55
HDLBP-222	ENST00000449504	SPATA31A6	Q5VVP1	1343 aa		11.61	□□□□□ -0.55
HDLBP-222	ENST00000449504	SLIT1	O75093	1534 aa		11.61	□□□□□ -0.55
HDLBP-222	ENST00000449504	LRP6	O75581	1613 aa		11.61	□□□□□ -0.55
HDLBP-222	ENST00000449504	PHLPP1	O60346	1717 aa		11.61	□□□□□ -0.55
HDLBP-222	ENST00000449504	MAP3K1	Q13233	1512 aa		11.6	□□□□□ -0.55
HDLBP-222	ENST00000449504	CAMSAP2	Q08AD1	1489 aa		11.6	□□□□□ -0.55
HDLBP-222	ENST00000449504	TMEM2	Q9UHN6	1383 aa		11.6	□□□□□ -0.55
HDLBP-222	ENST00000449504	C14orf37	Q86TY3	774 aa		11.59	□□□□□ -0.55
HDLBP-222	ENST00000449504	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.58	□□□□□ -0.56
HDLBP-222	ENST00000449504	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.58	□□□□□ -0.56	6e-13	■□□□□ 10.6
HDLBP-222	ENST00000449504	CFAP65	Q6ZU64	1925 aa	Known RBP	11.58	□□□□□ -0.56
HDLBP-222	ENST00000449504	PRDM15	P57071	1507 aa	Predicted RBP	11.57	□□□□□ -0.56
HDLBP-222	ENST00000449504	CEP162	Q5TB80	1403 aa		11.57	□□□□□ -0.56
HDLBP-222	ENST00000449504	EHBP1L1	Q8N3D4	1523 aa		11.56	□□□□□ -0.56
HDLBP-222	ENST00000449504	AFF2	P51816	1311 aa		11.56	□□□□□ -0.56
HDLBP-222	ENST00000449504	FGD6	Q6ZV73	1430 aa		11.55	□□□□□ -0.56
HDLBP-222	ENST00000449504	CACNB1	Q02641	598 aa	Predicted RBP	11.55	□□□□□ -0.56
HDLBP-222	ENST00000449504	IDI1	Q13907	227 aa		11.55	□□□□□ -0.56
HDLBP-222	ENST00000449504	CEP152	O94986	1710 aa		11.55	□□□□□ -0.56
HDLBP-222	ENST00000449504	COL16A1	Q07092	1604 aa	Predicted RBP	11.54	□□□□□ -0.56
HDLBP-222	ENST00000449504	QTRT2	Q9H974	415 aa	Known RBP	11.54	□□□□□ -0.56
HDLBP-222	ENST00000449504	ZRANB1	Q9UGI0	708 aa		11.54	□□□□□ -0.56
HDLBP-222	ENST00000449504	PIK3C2B	O00750	1634 aa		11.53	□□□□□ -0.56
HDLBP-222	ENST00000449504	NKTR	P30414	1462 aa	Known RBP	11.53	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms