RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 RNF17Q9BXT8 1623 aaKnown RBP28.52■■■□□ 2.16
RPS28-202ENST00000449223 CLSPNQ9HAW4 1339 aa28.49■■■□□ 2.15
RPS28-202ENST00000449223 IQGAP3Q86VI3 1631 aa28.48■■■□□ 2.15
RPS28-202ENST00000449223 PZPP20742 1482 aa28.48■■■□□ 2.15
RPS28-202ENST00000449223 PRDM15P57071 1507 aaPredicted RBP28.48■■■□□ 2.15
RPS28-202ENST00000449223 AGLP35573 1532 aa28.46■■■□□ 2.15
RPS28-202ENST00000449223 MROH1Q8NDA8 1641 aa28.46■■■□□ 2.15
RPS28-202ENST00000449223 CCER1Q8TC90 406 aaPredicted RBP28.46■■■□□ 2.15
RPS28-202ENST00000449223 VWDEQ8N2E2 1590 aa28.45■■■□□ 2.14
RPS28-202ENST00000449223 TRIM52Q96A61 297 aa28.43■■■□□ 2.14
RPS28-202ENST00000449223 NUP155O75694 1391 aa28.43■■■□□ 2.14
RPS28-202ENST00000449223 FAM135AQ9P2D6 1515 aa28.42■■■□□ 2.14
RPS28-202ENST00000449223 KIF3BO15066 747 aa28.39■■■□□ 2.14
RPS28-202ENST00000449223 MPHOSPH9Q99550 1183 aa28.39■■■□□ 2.14
RPS28-202ENST00000449223 SIGLEC1Q9BZZ2 1709 aa28.38■■■□□ 2.13
RPS28-202ENST00000449223 LMTK2Q8IWU2 1503 aa28.34■■■□□ 2.13
RPS28-202ENST00000449223 SLC4A1APQ9BWU0 796 aaKnown RBP28.34■■■□□ 2.13
RPS28-202ENST00000449223 KANK1Q14678 1352 aa28.32■■■□□ 2.12
RPS28-202ENST00000449223 TET3O43151 1660 aa28.32■■■□□ 2.12
RPS28-202ENST00000449223 ZC3H13Q5T200 1668 aaKnown RBP28.31■■■□□ 2.12
RPS28-202ENST00000449223 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.27■■■□□ 2.12
RPS28-202ENST00000449223 ABCC3O15438 1527 aa28.25■■■□□ 2.11
RPS28-202ENST00000449223 CEP152O94986 1710 aa28.25■■■□□ 2.11
RPS28-202ENST00000449223 EFCAB6Q5THR3 1501 aa28.24■■■□□ 2.11
RPS28-202ENST00000449223 ANKRD30BQ9BXX2 1392 aa28.24■■■□□ 2.11
RPS28-202ENST00000449223 PKD2Q13563 968 aa28.23■■■□□ 2.11
RPS28-202ENST00000449223 PPP6R1Q9UPN7 881 aa28.23■■■□□ 2.11
RPS28-202ENST00000449223 E9PCH4 1651 aa28.23■■■□□ 2.11
RPS28-202ENST00000449223 GGT6Q6P531 493 aa28.21■■■□□ 2.11
RPS28-202ENST00000449223 ZEB1P37275 1124 aaPredicted RBP28.2■■■□□ 2.1
RPS28-202ENST00000449223 RPRD2Q5VT52 1461 aaKnown RBP28.19■■■□□ 2.1
RPS28-202ENST00000449223 CAMSAP1Q5T5Y3 1602 aa28.18■■■□□ 2.1
RPS28-202ENST00000449223 ARHGAP31Q2M1Z3 1444 aa28.15■■■□□ 2.1
RPS28-202ENST00000449223 FOXD1Q16676 465 aa28.14■■■□□ 2.1
RPS28-202ENST00000449223 WASHC2CQ9Y4E1 1318 aa28.14■■■□□ 2.1
RPS28-202ENST00000449223 PTPRTO14522 1441 aa28.12■■■□□ 2.09
RPS28-202ENST00000449223 SPHKAPQ2M3C7 1700 aa28.12■■■□□ 2.09
RPS28-202ENST00000449223 PLA2R1Q13018 1463 aa28.11■■■□□ 2.09
RPS28-202ENST00000449223 NPATQ14207 1427 aa28.1■■■□□ 2.09
RPS28-202ENST00000449223 TRPM2O94759 1503 aa28.09■■■□□ 2.09
RPS28-202ENST00000449223 CLTCQ00610 1675 aaKnown RBP28.08■■■□□ 2.09
RPS28-202ENST00000449223 SIN3AQ96ST3 1273 aa28.06■■■□□ 2.08
RPS28-202ENST00000449223 TIMELESSQ9UNS1 1208 aa28.06■■■□□ 2.08
RPS28-202ENST00000449223 MROH2AA6NES4 1674 aa28.05■■■□□ 2.08
RPS28-202ENST00000449223 ARID4BQ4LE39 1312 aaPredicted RBP28.05■■■□□ 2.08
RPS28-202ENST00000449223 CNTLNQ9NXG0 1405 aa28.04■■■□□ 2.08
RPS28-202ENST00000449223 CCDC144AA2RUR9 1427 aa28.01■■■□□ 2.07
RPS28-202ENST00000449223 NOS1P29475 1434 aa28.01■■■□□ 2.07
RPS28-202ENST00000449223 PREX1Q8TCU6 1659 aa27.99■■■□□ 2.07
RPS28-202ENST00000449223 FER1L4A9Z1Z3 1794 aa27.99■■■□□ 2.07
RPS28-202ENST00000449223 MLECQ14165 292 aa27.98■■■□□ 2.07
RPS28-202ENST00000449223 NEURL4Q96JN8 1562 aa27.96■■■□□ 2.07
RPS28-202ENST00000449223 NEUROD1Q13562 356 aa27.96■■■□□ 2.07
RPS28-202ENST00000449223 CLTCL1P53675 1640 aa27.95■■■□□ 2.07
RPS28-202ENST00000449223 ADAMTSL3P82987 1691 aa27.94■■■□□ 2.06
RPS28-202ENST00000449223 SPATA31D1Q6ZQQ2 1576 aa27.94■■■□□ 2.06
RPS28-202ENST00000449223 PIK3C2BO00750 1634 aa27.94■■■□□ 2.06
RPS28-202ENST00000449223 SYNMO15061 1565 aa27.93■■■□□ 2.06
RPS28-202ENST00000449223 CFAP65Q6ZU64 1925 aaKnown RBP27.93■■■□□ 2.06
RPS28-202ENST00000449223 ERVK-7P63135 1459 aa27.93■■■□□ 2.06
RPS28-202ENST00000449223 ZMYM3Q14202 1370 aa27.92■■■□□ 2.06
RPS28-202ENST00000449223 TONSLQ96HA7 1378 aa27.92■■■□□ 2.06
RPS28-202ENST00000449223 ESF1Q9H501 851 aaKnown RBP27.92■■■□□ 2.06
RPS28-202ENST00000449223 MADDQ8WXG6 1647 aa27.88■■■□□ 2.05
RPS28-202ENST00000449223 SPATA31E1Q6ZUB1 1445 aa27.87■■■□□ 2.05
RPS28-202ENST00000449223 UGGT1Q9NYU2 1555 aa27.86■■■□□ 2.05
RPS28-202ENST00000449223 C3P01024 1663 aa27.86■■■□□ 2.05
RPS28-202ENST00000449223 KIF1BO60333 1816 aa27.86■■■□□ 2.05
RPS28-202ENST00000449223 SLC52A1Q9NWF4 448 aa27.82■■■□□ 2.04
RPS28-202ENST00000449223 ADGRB3O60242 1522 aa27.81■■■□□ 2.04
RPS28-202ENST00000449223 L3MBTL2Q969R5 705 aa27.8■■■□□ 2.04
RPS28-202ENST00000449223 RIMS1Q86UR5 1692 aaKnown RBP27.8■■■□□ 2.04
RPS28-202ENST00000449223 FBXO31Q5XUX0 539 aaPredicted RBP27.79■■■□□ 2.04
RPS28-202ENST00000449223 PPP1R15AO75807 674 aaPredicted RBP27.77■■■□□ 2.04
RPS28-202ENST00000449223 KDM5AP29375 1690 aaKnown RBP27.73■■■□□ 2.03
RPS28-202ENST00000449223 TMEM131LA2VDJ0 1609 aa27.73■■■□□ 2.03
RPS28-202ENST00000449223 IFT172Q9UG01 1749 aa27.72■■■□□ 2.03
RPS28-202ENST00000449223 IDI1Q13907 227 aa27.72■■■□□ 2.03
RPS28-202ENST00000449223 TNRQ92752 1358 aa27.72■■■□□ 2.03
RPS28-202ENST00000449223 UHRF1BP1Q6BDS2 1440 aa27.71■■■□□ 2.03
RPS28-202ENST00000449223 STAC3Q96MF2 364 aa27.69■■■□□ 2.02
RPS28-202ENST00000449223 NLRP1Q9C000 1473 aa27.69■■■□□ 2.02
RPS28-202ENST00000449223 MYO5BQ9ULV0 1848 aa27.66■■■□□ 2.02
RPS28-202ENST00000449223 PPLO60437 1756 aa27.65■■■□□ 2.02
RPS28-202ENST00000449223 MYOM2P54296 1465 aa27.64■■■□□ 2.02
RPS28-202ENST00000449223 CEBPAP49715 358 aaPredicted RBP27.64■■■□□ 2.02
RPS28-202ENST00000449223 RGL3Q3MIN7 710 aa27.64■■■□□ 2.02
RPS28-202ENST00000449223 PTPRMP28827 1452 aa27.63■■■□□ 2.01
RPS28-202ENST00000449223 RPGRIP1LQ68CZ1 1315 aa27.63■■■□□ 2.01
RPS28-202ENST00000449223 DCAF11Q8TEB1 546 aa27.62■■■□□ 2.01
RPS28-202ENST00000449223 MYO3AQ8NEV4 1616 aa27.62■■■□□ 2.01
RPS28-202ENST00000449223 A2ML1A8K2U0 1454 aa27.61■■■□□ 2.01
RPS28-202ENST00000449223 NEXMIFQ5QGS0 1516 aa27.61■■■□□ 2.01
RPS28-202ENST00000449223 UBR1Q8IWV7 1749 aa27.6■■■□□ 2.01
RPS28-202ENST00000449223 PRAG1Q86YV5 1406 aa27.6■■■□□ 2.01
RPS28-202ENST00000449223 SETD1BQ9UPS6 1966 aaKnown RBP27.6■■■□□ 2.01
RPS28-202ENST00000449223 NRXN1Q9ULB1 1477 aa27.59■■■□□ 2.01
RPS28-202ENST00000449223 NBPF8Q3BBV2 869 aa27.57■■■□□ 2
RPS28-202ENST00000449223 ZFYVE9O95405 1425 aa27.56■■■□□ 2
RPS28-202ENST00000449223 ZNF142P52746 1687 aaPredicted RBP27.56■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms