RNA–Protein interactions for RNA: ENST00000448530.5

VCP-203, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 950 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-203ENST00000448530 FGD6Q6ZV73 1430 aa30.64■■■□□ 2.5
VCP-203ENST00000448530 ZNF142P52746 1687 aaPredicted RBP30.63■■■□□ 2.49
VCP-203ENST00000448530 CAMSAP1Q5T5Y3 1602 aa30.62■■■□□ 2.49
VCP-203ENST00000448530 EIF2AK4Q9P2K8 1649 aaKnown RBP30.62■■■□□ 2.49
VCP-203ENST00000448530 CROCC2H7BZ55 1655 aa30.62■■■□□ 2.49
VCP-203ENST00000448530 NCOA1Q15788 1441 aa30.62■■■□□ 2.49
VCP-203ENST00000448530 PTPRTO14522 1441 aa30.61■■■□□ 2.49
VCP-203ENST00000448530 CEP170BQ9Y4F5 1589 aaPredicted RBP30.61■■■□□ 2.49
VCP-203ENST00000448530 ABCC5O15440 1437 aa30.6■■■□□ 2.49
VCP-203ENST00000448530 RNF17Q9BXT8 1623 aaKnown RBP30.6■■■□□ 2.49
VCP-203ENST00000448530 DUOX2Q9NRD8 1548 aa30.6■■■□□ 2.49
VCP-203ENST00000448530 SHANK2Q9UPX8 1470 aa30.6■■■□□ 2.49
VCP-203ENST00000448530 PZPP20742 1482 aa30.58■■■□□ 2.49
VCP-203ENST00000448530 TCOF1Q13428 1488 aaKnown RBP30.58■■■□□ 2.49
VCP-203ENST00000448530 CERKQ8TCT0 537 aa30.58■■■□□ 2.49
VCP-203ENST00000448530 DNMT1P26358 1616 aaKnown RBP30.57■■■□□ 2.48
VCP-203ENST00000448530 DAPK1P53355 1430 aa30.56■■■□□ 2.48
VCP-203ENST00000448530 TNRQ92752 1358 aa30.55■■■□□ 2.48
VCP-203ENST00000448530 KIF15Q9NS87 1388 aa30.55■■■□□ 2.48
VCP-203ENST00000448530 FBXO31Q5XUX0 539 aaPredicted RBP30.55■■■□□ 2.48
VCP-203ENST00000448530 ZC3H13Q5T200 1668 aaKnown RBP30.55■■■□□ 2.48
VCP-203ENST00000448530 A2ML1A8K2U0 1454 aa30.53■■■□□ 2.48
VCP-203ENST00000448530 RRP7BPQ9NSQ0 103 aa30.53■■■□□ 2.48
VCP-203ENST00000448530 PLA2R1Q13018 1463 aa30.51■■■□□ 2.48
VCP-203ENST00000448530 NCKAP5LQ9HCH0 1330 aa30.5■■■□□ 2.47
VCP-203ENST00000448530 ABCC3O15438 1527 aa30.5■■■□□ 2.47
VCP-203ENST00000448530 PKD2Q13563 968 aa30.49■■■□□ 2.47
VCP-203ENST00000448530 ERBINQ96RT1 1412 aa30.48■■■□□ 2.47
VCP-203ENST00000448530 ANKRD30AQ9BXX3 1397 aa30.48■■■□□ 2.47
VCP-203ENST00000448530 FAM50AQ14320 339 aaKnown RBP30.47■■■□□ 2.47
VCP-203ENST00000448530 CHIC2Q9UKJ5 165 aa30.47■■■□□ 2.47
VCP-203ENST00000448530 MROH1Q8NDA8 1641 aa30.47■■■□□ 2.47
VCP-203ENST00000448530 CEP152O94986 1710 aa30.44■■■□□ 2.46
VCP-203ENST00000448530 NLRP1Q9C000 1473 aa30.43■■■□□ 2.46
VCP-203ENST00000448530 PRDM15P57071 1507 aaPredicted RBP30.4■■■□□ 2.46
VCP-203ENST00000448530 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.39■■■□□ 2.465e-8■□□□□ 9.9
VCP-203ENST00000448530 KANK1Q14678 1352 aa30.38■■■□□ 2.45
VCP-203ENST00000448530 THEMISQ8N1K5 641 aaPredicted RBP30.37■■■□□ 2.45
VCP-203ENST00000448530 CFAP65Q6ZU64 1925 aaKnown RBP30.37■■■□□ 2.45
VCP-203ENST00000448530 SPATA31D1Q6ZQQ2 1576 aa30.37■■■□□ 2.45
VCP-203ENST00000448530 ERVK-7P63135 1459 aa30.36■■■□□ 2.45
VCP-203ENST00000448530 UGGT1Q9NYU2 1555 aa30.35■■■□□ 2.45
VCP-203ENST00000448530 DEPDC5O75140 1603 aa30.35■■■□□ 2.45
VCP-203ENST00000448530 POLR1AO95602 1720 aaPredicted RBP30.35■■■□□ 2.45
VCP-203ENST00000448530 LTBP4Q8N2S1 1624 aa30.33■■■□□ 2.45
VCP-203ENST00000448530 ADGRL2O95490 1459 aa30.33■■■□□ 2.45
VCP-203ENST00000448530 ANKLE2Q86XL3 938 aa30.31■■■□□ 2.44
VCP-203ENST00000448530 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.3■■■□□ 2.442e-7■■■□□ 17.6
VCP-203ENST00000448530 ARHGAP31Q2M1Z3 1444 aa30.29■■■□□ 2.44
VCP-203ENST00000448530 ZNF335Q9H4Z2 1342 aaPredicted RBP30.28■■■□□ 2.44
VCP-203ENST00000448530 IQSEC2Q5JU85 1478 aa30.25■■■□□ 2.43
VCP-203ENST00000448530 PPARGC1BQ86YN6 1023 aaKnown RBP30.24■■■□□ 2.43
VCP-203ENST00000448530 NEURL4Q96JN8 1562 aa30.24■■■□□ 2.43
VCP-203ENST00000448530 ANKRD50Q9ULJ7 1429 aa30.22■■■□□ 2.43
VCP-203ENST00000448530 LMTK2Q8IWU2 1503 aa30.21■■■□□ 2.43
VCP-203ENST00000448530 VWDEQ8N2E2 1590 aa30.2■■■□□ 2.42
VCP-203ENST00000448530 UBR1Q8IWV7 1749 aa30.18■■■□□ 2.42
VCP-203ENST00000448530 NPHP4O75161 1426 aaPredicted RBP30.17■■■□□ 2.42
VCP-203ENST00000448530 MED14O60244 1454 aa30.15■■■□□ 2.42
VCP-203ENST00000448530 EFCAB6Q5THR3 1501 aa30.13■■■□□ 2.41
VCP-203ENST00000448530 ITGAEP38570 1179 aa30.13■■■□□ 2.41
VCP-203ENST00000448530 STAG3Q9UJ98 1225 aa30.13■■■□□ 2.41
VCP-203ENST00000448530 IQGAP1P46940 1657 aa30.13■■■□□ 2.41
VCP-203ENST00000448530 ROCK1Q13464 1354 aa30.13■■■□□ 2.41
VCP-203ENST00000448530 PIK3C2BO00750 1634 aa30.1■■■□□ 2.41
VCP-203ENST00000448530 CPS1P31327 1500 aa30.07■■■□□ 2.4
VCP-203ENST00000448530 SCAF11Q99590 1463 aaKnown RBP30.06■■■□□ 2.4
VCP-203ENST00000448530 EID1Q9Y6B2 187 aa30.06■■■□□ 2.4
VCP-203ENST00000448530 UBAP1LF5GYI3 381 aa30.05■■■□□ 2.4
VCP-203ENST00000448530 TXNDC2Q86VQ3 553 aa30.05■■■□□ 2.4
VCP-203ENST00000448530 UNC13BO14795 1591 aa30.05■■■□□ 2.4
VCP-203ENST00000448530 SLIT1O75093 1534 aa30.05■■■□□ 2.4
VCP-203ENST00000448530 TET3O43151 1660 aa30.04■■■□□ 2.4
VCP-203ENST00000448530 RPRD2Q5VT52 1461 aaKnown RBP30.04■■■□□ 2.4
VCP-203ENST00000448530 SYNMO15061 1565 aa30.03■■■□□ 2.4
VCP-203ENST00000448530 IDI1Q13907 227 aa30.03■■■□□ 2.4
VCP-203ENST00000448530 ARHGAP23Q9P227 1491 aa30.03■■■□□ 2.4
VCP-203ENST00000448530 KDM5AP29375 1690 aaKnown RBP30.03■■■□□ 2.4
VCP-203ENST00000448530 NOS1P29475 1434 aa30.03■■■□□ 2.4
VCP-203ENST00000448530 GCC2Q8IWJ2 1684 aa30.01■■■□□ 2.39
VCP-203ENST00000448530 SLC52A1Q9NWF4 448 aa30■■■□□ 2.39
VCP-203ENST00000448530 TMEM2Q9UHN6 1383 aa30■■■□□ 2.39
VCP-203ENST00000448530 LTKP29376 864 aa29.99■■■□□ 2.39
VCP-203ENST00000448530 ADGRB3O60242 1522 aa29.95■■■□□ 2.38
VCP-203ENST00000448530 IQGAP3Q86VI3 1631 aa29.93■■■□□ 2.38
VCP-203ENST00000448530 RRBP1Q9P2E9 1410 aaKnown RBP29.93■■■□□ 2.38
VCP-203ENST00000448530 NUP155O75694 1391 aa29.92■■■□□ 2.38
VCP-203ENST00000448530 TOM1O60784 492 aa29.9■■■□□ 2.38
VCP-203ENST00000448530 E9PCH4 1651 aa29.9■■■□□ 2.38
VCP-203ENST00000448530 STRCP1A6NGW2 1772 aa29.88■■■□□ 2.37
VCP-203ENST00000448530 SCAF1Q9H7N4 1312 aaKnown RBP29.88■■■□□ 2.37
VCP-203ENST00000448530 MYO5BQ9ULV0 1848 aa29.83■■■□□ 2.37
VCP-203ENST00000448530 LRRC7Q96NW7 1537 aa29.83■■■□□ 2.37
VCP-203ENST00000448530 PIP4K2BP78356 416 aa29.83■■■□□ 2.37
VCP-203ENST00000448530 BCANQ96GW7 911 aa29.83■■■□□ 2.37
VCP-203ENST00000448530 CHGAP10645 457 aaKnown RBP29.82■■■□□ 2.36
VCP-203ENST00000448530 HDGFP51858 240 aaKnown RBP29.82■■■□□ 2.36
VCP-203ENST00000448530 TMEM131LA2VDJ0 1609 aa29.8■■■□□ 2.36
VCP-203ENST00000448530 PPP1R15AO75807 674 aaPredicted RBP29.79■■■□□ 2.36
VCP-203ENST00000448530 SLC26A8Q96RN1 970 aa29.77■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms