RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ABCC5O15440 1437 aa32.43■■■□□ 2.78
SDC1-205ENST00000447124 NCKAP5LQ9HCH0 1330 aa32.4■■■□□ 2.78
SDC1-205ENST00000447124 CAMSAP1Q5T5Y3 1602 aa32.39■■■□□ 2.78
SDC1-205ENST00000447124 FGD6Q6ZV73 1430 aa32.38■■■□□ 2.77
SDC1-205ENST00000447124 PTPN23Q9H3S7 1636 aa32.37■■■□□ 2.77
SDC1-205ENST00000447124 KDM5DQ9BY66 1539 aa32.36■■■□□ 2.77
SDC1-205ENST00000447124 RRP7BPQ9NSQ0 103 aa32.35■■■□□ 2.77
SDC1-205ENST00000447124 MYO3AQ8NEV4 1616 aa32.35■■■□□ 2.77
SDC1-205ENST00000447124 PZPP20742 1482 aa32.34■■■□□ 2.77
SDC1-205ENST00000447124 TCOF1Q13428 1488 aaKnown RBP32.34■■■□□ 2.77
SDC1-205ENST00000447124 TNRQ92752 1358 aa32.33■■■□□ 2.77
SDC1-205ENST00000447124 FAM135AQ9P2D6 1515 aa32.33■■■□□ 2.77
SDC1-205ENST00000447124 CEP170BQ9Y4F5 1589 aaPredicted RBP32.32■■■□□ 2.76
SDC1-205ENST00000447124 DAPK1P53355 1430 aa32.31■■■□□ 2.76
SDC1-205ENST00000447124 KIF15Q9NS87 1388 aa32.3■■■□□ 2.76
SDC1-205ENST00000447124 A2ML1A8K2U0 1454 aa32.29■■■□□ 2.76
SDC1-205ENST00000447124 CHIC2Q9UKJ5 165 aa32.29■■■□□ 2.76
SDC1-205ENST00000447124 ZNF142P52746 1687 aaPredicted RBP32.28■■■□□ 2.76
SDC1-205ENST00000447124 DUOX2Q9NRD8 1548 aa32.28■■■□□ 2.76
SDC1-205ENST00000447124 PKD2Q13563 968 aa32.28■■■□□ 2.76
SDC1-205ENST00000447124 RNF17Q9BXT8 1623 aaKnown RBP32.28■■■□□ 2.76
SDC1-205ENST00000447124 SHANK2Q9UPX8 1470 aa32.28■■■□□ 2.76
SDC1-205ENST00000447124 PLA2R1Q13018 1463 aa32.27■■■□□ 2.76
SDC1-205ENST00000447124 ABCC3O15438 1527 aa32.25■■■□□ 2.75
SDC1-205ENST00000447124 EIF2AK4Q9P2K8 1649 aaKnown RBP32.24■■■□□ 2.75
SDC1-205ENST00000447124 DNMT1P26358 1616 aaKnown RBP32.23■■■□□ 2.75
SDC1-205ENST00000447124 MROH1Q8NDA8 1641 aa32.23■■■□□ 2.75
SDC1-205ENST00000447124 CROCC2H7BZ55 1655 aa32.21■■■□□ 2.75
SDC1-205ENST00000447124 LTBP4Q8N2S1 1624 aa32.19■■■□□ 2.74
SDC1-205ENST00000447124 FAM50AQ14320 339 aaKnown RBP32.19■■■□□ 2.74
SDC1-205ENST00000447124 ERBINQ96RT1 1412 aa32.17■■■□□ 2.74
SDC1-205ENST00000447124 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.17■■■□□ 2.74
SDC1-205ENST00000447124 ANKRD30AQ9BXX3 1397 aa32.17■■■□□ 2.74
SDC1-205ENST00000447124 ZNF335Q9H4Z2 1342 aaPredicted RBP32.15■■■□□ 2.74
SDC1-205ENST00000447124 THEMISQ8N1K5 641 aaPredicted RBP32.14■■■□□ 2.74
SDC1-205ENST00000447124 NLRP1Q9C000 1473 aa32.13■■■□□ 2.73
SDC1-205ENST00000447124 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.12■■■□□ 2.739e-6■■■■□ 19.8
SDC1-205ENST00000447124 ZC3H13Q5T200 1668 aaKnown RBP32.11■■■□□ 2.73
SDC1-205ENST00000447124 SPATA31D1Q6ZQQ2 1576 aa32.11■■■□□ 2.73
SDC1-205ENST00000447124 ERVK-7P63135 1459 aa32.1■■■□□ 2.73
SDC1-205ENST00000447124 CEP152O94986 1710 aa32.09■■■□□ 2.73
SDC1-205ENST00000447124 ANKLE2Q86XL3 938 aa32.09■■■□□ 2.73
SDC1-205ENST00000447124 PPARGC1BQ86YN6 1023 aaKnown RBP32.08■■■□□ 2.73
SDC1-205ENST00000447124 CFAP65Q6ZU64 1925 aaKnown RBP32.08■■■□□ 2.73
SDC1-205ENST00000447124 PRDM15P57071 1507 aaPredicted RBP32.06■■■□□ 2.72
SDC1-205ENST00000447124 ARHGAP31Q2M1Z3 1444 aa32.06■■■□□ 2.72
SDC1-205ENST00000447124 UGGT1Q9NYU2 1555 aa32.06■■■□□ 2.72
SDC1-205ENST00000447124 ADGRL2O95490 1459 aa32.05■■■□□ 2.72
SDC1-205ENST00000447124 KANK1Q14678 1352 aa32.01■■■□□ 2.71
SDC1-205ENST00000447124 NEURL4Q96JN8 1562 aa32.01■■■□□ 2.71
SDC1-205ENST00000447124 DEPDC5O75140 1603 aa32■■■□□ 2.71
SDC1-205ENST00000447124 IQSEC2Q5JU85 1478 aa31.96■■■□□ 2.71
SDC1-205ENST00000447124 VWDEQ8N2E2 1590 aa31.95■■■□□ 2.71
SDC1-205ENST00000447124 ANKRD50Q9ULJ7 1429 aa31.95■■■□□ 2.71
SDC1-205ENST00000447124 LMTK2Q8IWU2 1503 aa31.94■■■□□ 2.7
SDC1-205ENST00000447124 NPHP4O75161 1426 aaPredicted RBP31.93■■■□□ 2.7
SDC1-205ENST00000447124 MED14O60244 1454 aa31.93■■■□□ 2.7
SDC1-205ENST00000447124 POLR1AO95602 1720 aaPredicted RBP31.93■■■□□ 2.7
SDC1-205ENST00000447124 IDI1Q13907 227 aa31.9■■■□□ 2.7
SDC1-205ENST00000447124 LTKP29376 864 aa31.89■■■□□ 2.7
SDC1-205ENST00000447124 ITGAEP38570 1179 aa31.86■■■□□ 2.69
SDC1-205ENST00000447124 UBR1Q8IWV7 1749 aa31.86■■■□□ 2.69
SDC1-205ENST00000447124 TXNDC2Q86VQ3 553 aa31.85■■■□□ 2.69
SDC1-205ENST00000447124 UBAP1LF5GYI3 381 aa31.84■■■□□ 2.69
SDC1-205ENST00000447124 ROCK1Q13464 1354 aa31.83■■■□□ 2.69
SDC1-205ENST00000447124 NOS1P29475 1434 aa31.83■■■□□ 2.69
SDC1-205ENST00000447124 ARHGAP23Q9P227 1491 aa31.82■■■□□ 2.68
SDC1-205ENST00000447124 STAG3Q9UJ98 1225 aa31.79■■■□□ 2.68
SDC1-205ENST00000447124 SLIT1O75093 1534 aa31.79■■■□□ 2.68
SDC1-205ENST00000447124 EFCAB6Q5THR3 1501 aa31.79■■■□□ 2.68
SDC1-205ENST00000447124 PIK3C2BO00750 1634 aa31.78■■■□□ 2.68
SDC1-205ENST00000447124 SCAF11Q99590 1463 aaKnown RBP31.78■■■□□ 2.68
SDC1-205ENST00000447124 SYNMO15061 1565 aa31.77■■■□□ 2.68
SDC1-205ENST00000447124 IQGAP1P46940 1657 aa31.76■■■□□ 2.68
SDC1-205ENST00000447124 CPS1P31327 1500 aa31.76■■■□□ 2.68
SDC1-205ENST00000447124 TMEM2Q9UHN6 1383 aa31.76■■■□□ 2.67
SDC1-205ENST00000447124 SLC52A1Q9NWF4 448 aa31.75■■■□□ 2.67
SDC1-205ENST00000447124 EID1Q9Y6B2 187 aa31.74■■■□□ 2.67
SDC1-205ENST00000447124 RPRD2Q5VT52 1461 aaKnown RBP31.69■■■□□ 2.66
SDC1-205ENST00000447124 UNC13BO14795 1591 aa31.67■■■□□ 2.66
SDC1-205ENST00000447124 STRCP1A6NGW2 1772 aa31.66■■■□□ 2.66
SDC1-205ENST00000447124 TET3O43151 1660 aa31.65■■■□□ 2.66
SDC1-205ENST00000447124 NUP155O75694 1391 aa31.65■■■□□ 2.66
SDC1-205ENST00000447124 RRBP1Q9P2E9 1410 aaKnown RBP31.65■■■□□ 2.66
SDC1-205ENST00000447124 TOM1O60784 492 aa31.64■■■□□ 2.66
SDC1-205ENST00000447124 KDM5AP29375 1690 aaKnown RBP31.62■■■□□ 2.65
SDC1-205ENST00000447124 LRRC7Q96NW7 1537 aa31.62■■■□□ 2.65
SDC1-205ENST00000447124 PIP4K2BP78356 416 aa31.61■■■□□ 2.65
SDC1-205ENST00000447124 ADGRB3O60242 1522 aa31.59■■■□□ 2.65
SDC1-205ENST00000447124 SLC26A8Q96RN1 970 aa31.58■■■□□ 2.65
SDC1-205ENST00000447124 SCAF1Q9H7N4 1312 aaKnown RBP31.56■■■□□ 2.64
SDC1-205ENST00000447124 GCC2Q8IWJ2 1684 aa31.56■■■□□ 2.64
SDC1-205ENST00000447124 E9PCH4 1651 aa31.55■■■□□ 2.64
SDC1-205ENST00000447124 IQGAP3Q86VI3 1631 aa31.55■■■□□ 2.64
SDC1-205ENST00000447124 CHGAP10645 457 aaKnown RBP31.53■■■□□ 2.64
SDC1-205ENST00000447124 ALKQ9UM73 1620 aa31.53■■■□□ 2.64
SDC1-205ENST00000447124 HSPA1LP34931 641 aa31.52■■■□□ 2.64
SDC1-205ENST00000447124 SENP3Q9H4L4 574 aaPredicted RBP31.52■■■□□ 2.64
SDC1-205ENST00000447124 ZFYVE9O95405 1425 aa31.51■■■□□ 2.64
SDC1-205ENST00000447124 KCNA6P17658 529 aa31.51■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms