RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 PTCD2Q8WV60 388 aaKnown RBP9.02□□□□□ -0.97
PTPN4-206ENST00000441089 DNMBPQ6XZF7 1577 aa9.01□□□□□ -0.97
PTPN4-206ENST00000441089 CHMP7Q8WUX9 453 aaPredicted RBP9.01□□□□□ -0.97
PTPN4-206ENST00000441089 ERCC6L2Q5T890 1561 aa9□□□□□ -0.97
PTPN4-206ENST00000441089 KCTD12Q96CX2 325 aaKnown RBP9□□□□□ -0.97
PTPN4-206ENST00000441089 TK2O00142 265 aa8.99□□□□□ -0.97
PTPN4-206ENST00000441089 WDR97A6NE52 1622 aa8.98□□□□□ -0.97
PTPN4-206ENST00000441089 TAOK2Q9UL54 1235 aa8.98□□□□□ -0.97
PTPN4-206ENST00000441089 SNAPC4Q5SXM2 1469 aa8.97□□□□□ -0.97
PTPN4-206ENST00000441089 MAGI1Q96QZ7 1491 aaPredicted RBP8.97□□□□□ -0.97
PTPN4-206ENST00000441089 DSG2Q14126 1118 aa8.97□□□□□ -0.97
PTPN4-206ENST00000441089 PLPP6Q8IY26 295 aa8.97□□□□□ -0.97
PTPN4-206ENST00000441089 FOXK1P85037 733 aa8.96□□□□□ -0.98
PTPN4-206ENST00000441089 TOP2AP11388 1531 aaKnown RBP8.95□□□□□ -0.98
PTPN4-206ENST00000441089 FBXO41Q8TF61 875 aa8.95□□□□□ -0.98
PTPN4-206ENST00000441089 PSDA5PKW4 1024 aaPredicted RBP8.94□□□□□ -0.98
PTPN4-206ENST00000441089 KCNK17Q96T54 332 aa8.94□□□□□ -0.98
PTPN4-206ENST00000441089 SYNJ2O15056 1496 aa8.94□□□□□ -0.98
PTPN4-206ENST00000441089 POLA1P09884 1462 aaPredicted RBP8.94□□□□□ -0.98
PTPN4-206ENST00000441089 KDM6BO15054 1643 aa8.93□□□□□ -0.98
PTPN4-206ENST00000441089 TDRD9Q8NDG6 1382 aaKnown RBP8.92□□□□□ -0.98
PTPN4-206ENST00000441089 GPHNQ9NQX3 736 aaPredicted RBP8.92□□□□□ -0.98
PTPN4-206ENST00000441089 VPS9D1Q9Y2B5 631 aa8.92□□□□□ -0.98
PTPN4-206ENST00000441089 HECW2Q9P2P5 1572 aa8.91□□□□□ -0.98
PTPN4-206ENST00000441089 PPP4R3BQ5MIZ7 849 aa8.91□□□□□ -0.98
PTPN4-206ENST00000441089 GRIN2BQ13224 1484 aa8.9□□□□□ -0.98
PTPN4-206ENST00000441089 PTPN5P54829 565 aa8.9□□□□□ -0.98
PTPN4-206ENST00000441089 SOGA1O94964 1423 aa8.89□□□□□ -0.99
PTPN4-206ENST00000441089 LMTK3Q96Q04 1460 aa8.89□□□□□ -0.99
PTPN4-206ENST00000441089 RAD54L2Q9Y4B4 1467 aa8.88□□□□□ -0.99
PTPN4-206ENST00000441089 FAM69CQ0P6D2 419 aa8.87□□□□□ -0.99
PTPN4-206ENST00000441089 OXER1Q8TDS5 423 aa8.87□□□□□ -0.99
PTPN4-206ENST00000441089 ABCC10Q5T3U5 1492 aa8.87□□□□□ -0.99
PTPN4-206ENST00000441089 UPF1Q92900 1129 aaKnown RBP eCLIP8.86□□□□□ -0.99
PTPN4-206ENST00000441089 TSPOAP1O95153 1857 aa8.85□□□□□ -0.99
PTPN4-206ENST00000441089 PBRM1Q86U86 1689 aa8.85□□□□□ -0.99
PTPN4-206ENST00000441089 BHMG1C9JSJ3 638 aaPredicted RBP8.85□□□□□ -0.99
PTPN4-206ENST00000441089 ADGRL1O94910 1474 aa8.84□□□□□ -0.99
PTPN4-206ENST00000441089 CEP170Q5SW79 1584 aa8.84□□□□□ -0.99
PTPN4-206ENST00000441089 DIP2BQ9P265 1576 aa8.83□□□□□ -1
PTPN4-206ENST00000441089 SOCS7O14512 581 aa8.83□□□□□ -1
PTPN4-206ENST00000441089 NKX1-1Q15270 411 aaPredicted RBP8.83□□□□□ -1
PTPN4-206ENST00000441089 ZNF454Q8N9F8 522 aa8.83□□□□□ -1
PTPN4-206ENST00000441089 CCDC88BA6NC98 1476 aa8.83□□□□□ -1
PTPN4-206ENST00000441089 MAPKBP1O60336 1514 aa8.82□□□□□ -1
PTPN4-206ENST00000441089 THSD4Q6ZMP0 1018 aa8.82□□□□□ -1
PTPN4-206ENST00000441089 BCL2L12Q9HB09 334 aa8.82□□□□□ -1
PTPN4-206ENST00000441089 SHROOM2Q13796 1616 aa8.81□□□□□ -1
PTPN4-206ENST00000441089 HS6ST3Q8IZP7 471 aa8.81□□□□□ -1
PTPN4-206ENST00000441089 FOSBP53539 338 aa8.8□□□□□ -1
PTPN4-206ENST00000441089 ZBED2Q9BTP6 218 aa8.8□□□□□ -1
PTPN4-206ENST00000441089 CRISPLD2Q9H0B8 497 aa8.8□□□□□ -1
PTPN4-206ENST00000441089 FGD5Q6ZNL6 1462 aa8.8□□□□□ -1
PTPN4-206ENST00000441089 TBC1D12O60347 775 aa8.79□□□□□ -1
PTPN4-206ENST00000441089 A0A0G2JS52 829 aa8.78□□□□□ -1
PTPN4-206ENST00000441089 STAC3Q96MF2 364 aa8.78□□□□□ -1
PTPN4-206ENST00000441089 SLC4A5Q9BY07 1137 aa8.78□□□□□ -1
PTPN4-206ENST00000441089 NCKAP5LQ9HCH0 1330 aa8.78□□□□□ -1
PTPN4-206ENST00000441089 GRIN2AQ12879 1464 aa8.77□□□□□ -1
PTPN4-206ENST00000441089 IFFO2Q5TF58 517 aa8.77□□□□□ -1.01
PTPN4-206ENST00000441089 ADAM33Q9BZ11 813 aa8.77□□□□□ -1.01
PTPN4-206ENST00000441089 NUP160Q12769 1436 aa8.76□□□□□ -1.01
PTPN4-206ENST00000441089 PPP1R15BQ5SWA1 713 aa8.75□□□□□ -1.01
PTPN4-206ENST00000441089 WNT2BQ93097 391 aa8.75□□□□□ -1.01
PTPN4-206ENST00000441089 IRX2Q9BZI1 471 aaPredicted RBP8.74□□□□□ -1.01
PTPN4-206ENST00000441089 PTPREP23469 700 aa8.73□□□□□ -1.01
PTPN4-206ENST00000441089 KCNH8Q96L42 1107 aa8.73□□□□□ -1.01
PTPN4-206ENST00000441089 ANO8Q9HCE9 1232 aaPredicted RBP8.73□□□□□ -1.01
PTPN4-206ENST00000441089 TOP2BQ02880 1626 aa8.72□□□□□ -1.01
PTPN4-206ENST00000441089 ABCA5Q8WWZ7 1642 aa8.72□□□□□ -1.01
PTPN4-206ENST00000441089 CHGAP10645 457 aaKnown RBP8.72□□□□□ -1.01
PTPN4-206ENST00000441089 PRG4Q92954 1404 aaPredicted RBP8.71□□□□□ -1.01
PTPN4-206ENST00000441089 MRPL50Q8N5N7 158 aaKnown RBP8.71□□□□□ -1.02
PTPN4-206ENST00000441089 JPH4Q96JJ6 628 aa8.71□□□□□ -1.02
PTPN4-206ENST00000441089 DISP3Q9P2K9 1392 aa8.71□□□□□ -1.02
PTPN4-206ENST00000441089 ADAMTS12P58397 1594 aa8.7□□□□□ -1.02
PTPN4-206ENST00000441089 ADCY10Q96PN6 1610 aa8.7□□□□□ -1.02
PTPN4-206ENST00000441089 EVI5O60447 810 aa8.7□□□□□ -1.02
PTPN4-206ENST00000441089 RGS20O76081 388 aa8.7□□□□□ -1.02
PTPN4-206ENST00000441089 PROX2Q3B8N5 592 aa8.7□□□□□ -1.02
PTPN4-206ENST00000441089 ILDR2Q71H61 639 aa8.7□□□□□ -1.02
PTPN4-206ENST00000441089 COL9A1P20849 921 aa8.69□□□□□ -1.02
PTPN4-206ENST00000441089 CUX1P39880 1505 aa8.69□□□□□ -1.02
PTPN4-206ENST00000441089 ABCA10Q8WWZ4 1543 aa8.69□□□□□ -1.02
PTPN4-206ENST00000441089 ZDHHC16Q969W1 377 aa8.68□□□□□ -1.02
PTPN4-206ENST00000441089 BCAMP50895 628 aa8.67□□□□□ -1.02
PTPN4-206ENST00000441089 PPRC1Q5VV67 1664 aaKnown RBP8.67□□□□□ -1.02
PTPN4-206ENST00000441089 EMILIN3Q9NT22 766 aa8.67□□□□□ -1.02
PTPN4-206ENST00000441089 FHAD1B1AJZ9 1412 aa8.66□□□□□ -1.02
PTPN4-206ENST00000441089 GOLGA8CPA6NN73 597 aa8.66□□□□□ -1.02
PTPN4-206ENST00000441089 LCE2BO14633 110 aa8.65□□□□□ -1.02
PTPN4-206ENST00000441089 PCDHGA10Q9Y5H3 936 aa8.65□□□□□ -1.02
PTPN4-206ENST00000441089 ITGBL1O95965 494 aaPredicted RBP8.64□□□□□ -1.03
PTPN4-206ENST00000441089 GLI2P10070 1586 aa8.64□□□□□ -1.03
PTPN4-206ENST00000441089 PPP1R3GB7ZBB8 358 aa8.62□□□□□ -1.03
PTPN4-206ENST00000441089 NBPF3Q9H094 633 aa8.62□□□□□ -1.03
PTPN4-206ENST00000441089 LARP6Q9BRS8 491 aaKnown RBP8.61□□□□□ -1.03
PTPN4-206ENST00000441089 PLB1Q6P1J6 1458 aa8.61□□□□□ -1.03
PTPN4-206ENST00000441089 TEX14Q8IWB6 1497 aa8.61□□□□□ -1.03
PTPN4-206ENST00000441089 COL17A1Q9UMD9 1497 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms