RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 REREQ9P2R6 1566 aa33.95■■■■□ 3.03
CPSF4-204ENST00000436336 ATP10AO60312 1499 aa33.94■■■■□ 3.02
CPSF4-204ENST00000436336 RNF17Q9BXT8 1623 aaKnown RBP33.9■■■■□ 3.02
CPSF4-204ENST00000436336 PZPP20742 1482 aa33.89■■■■□ 3.02
CPSF4-204ENST00000436336 NUP155O75694 1391 aa33.89■■■■□ 3.02
CPSF4-204ENST00000436336 IQGAP3Q86VI3 1631 aa33.89■■■■□ 3.02
CPSF4-204ENST00000436336 KIF3BO15066 747 aa33.87■■■■□ 3.01
CPSF4-204ENST00000436336 CLSPNQ9HAW4 1339 aa33.86■■■■□ 3.01
CPSF4-204ENST00000436336 MPHOSPH9Q99550 1183 aa33.86■■■■□ 3.01
CPSF4-204ENST00000436336 PRDM15P57071 1507 aaPredicted RBP33.85■■■■□ 3.01
CPSF4-204ENST00000436336 MROH1Q8NDA8 1641 aa33.84■■■■□ 3.01
CPSF4-204ENST00000436336 FAM135AQ9P2D6 1515 aa33.83■■■■□ 3.01
CPSF4-204ENST00000436336 SLC4A1APQ9BWU0 796 aaKnown RBP33.82■■■■□ 3
CPSF4-204ENST00000436336 AGLP35573 1532 aa33.81■■■■□ 3
CPSF4-204ENST00000436336 GRWD1Q9BQ67 446 aaKnown RBP eCLIP33.8■■■■□ 35e-6■□□□□ 8.1
CPSF4-204ENST00000436336 VWDEQ8N2E2 1590 aa33.79■■■■□ 3
CPSF4-204ENST00000436336 SIGLEC1Q9BZZ2 1709 aa33.78■■■■□ 3
CPSF4-204ENST00000436336 KANK1Q14678 1352 aa33.76■■■■□ 3
CPSF4-204ENST00000436336 TET3O43151 1660 aa33.72■■■□□ 2.99
CPSF4-204ENST00000436336 CEP152O94986 1710 aa33.71■■■□□ 2.99
CPSF4-204ENST00000436336 GGT6Q6P531 493 aa33.68■■■□□ 2.98
CPSF4-204ENST00000436336 ZC3H13Q5T200 1668 aaKnown RBP33.68■■■□□ 2.98
CPSF4-204ENST00000436336 PKD2Q13563 968 aa33.67■■■□□ 2.98
CPSF4-204ENST00000436336 LMTK2Q8IWU2 1503 aa33.67■■■□□ 2.98
CPSF4-204ENST00000436336 ZEB1P37275 1124 aaPredicted RBP33.65■■■□□ 2.98
CPSF4-204ENST00000436336 E9PCH4 1651 aa33.64■■■□□ 2.98
CPSF4-204ENST00000436336 FOXD1Q16676 465 aa33.62■■■□□ 2.97
CPSF4-204ENST00000436336 ABCC3O15438 1527 aa33.61■■■□□ 2.97
CPSF4-204ENST00000436336 EFCAB6Q5THR3 1501 aa33.59■■■□□ 2.97
CPSF4-204ENST00000436336 ANKRD30BQ9BXX2 1392 aa33.59■■■□□ 2.97
CPSF4-204ENST00000436336 CAMSAP1Q5T5Y3 1602 aa33.58■■■□□ 2.97
CPSF4-204ENST00000436336 PPP6R1Q9UPN7 881 aa33.56■■■□□ 2.96
CPSF4-204ENST00000436336 WASHC2CQ9Y4E1 1318 aa33.56■■■□□ 2.96
CPSF4-204ENST00000436336 ARID4BQ4LE39 1312 aaPredicted RBP33.52■■■□□ 2.96
CPSF4-204ENST00000436336 SPHKAPQ2M3C7 1700 aa33.52■■■□□ 2.96
CPSF4-204ENST00000436336 SIN3AQ96ST3 1273 aa33.51■■■□□ 2.96
CPSF4-204ENST00000436336 CLTCQ00610 1675 aaKnown RBP33.5■■■□□ 2.95
CPSF4-204ENST00000436336 RPRD2Q5VT52 1461 aaKnown RBP33.49■■■□□ 2.95
CPSF4-204ENST00000436336 MLECQ14165 292 aa33.47■■■□□ 2.95
CPSF4-204ENST00000436336 NEUROD1Q13562 356 aa33.45■■■□□ 2.94
CPSF4-204ENST00000436336 ARHGAP31Q2M1Z3 1444 aa33.44■■■□□ 2.94
CPSF4-204ENST00000436336 CFAP65Q6ZU64 1925 aaKnown RBP33.43■■■□□ 2.94
CPSF4-204ENST00000436336 NPATQ14207 1427 aa33.43■■■□□ 2.94
CPSF4-204ENST00000436336 PLA2R1Q13018 1463 aa33.43■■■□□ 2.94
CPSF4-204ENST00000436336 PTPRTO14522 1441 aa33.42■■■□□ 2.94
CPSF4-204ENST00000436336 TRPM2O94759 1503 aa33.41■■■□□ 2.94
CPSF4-204ENST00000436336 MROH2AA6NES4 1674 aa33.37■■■□□ 2.93
CPSF4-204ENST00000436336 FER1L4A9Z1Z3 1794 aa33.37■■■□□ 2.93
CPSF4-204ENST00000436336 TIMELESSQ9UNS1 1208 aa33.37■■■□□ 2.93
CPSF4-204ENST00000436336 CCDC144AA2RUR9 1427 aa33.36■■■□□ 2.93
CPSF4-204ENST00000436336 ESF1Q9H501 851 aaKnown RBP33.36■■■□□ 2.93
CPSF4-204ENST00000436336 PREX1Q8TCU6 1659 aa33.35■■■□□ 2.93
CPSF4-204ENST00000436336 CNTLNQ9NXG0 1405 aa33.34■■■□□ 2.93
CPSF4-204ENST00000436336 TONSLQ96HA7 1378 aa33.32■■■□□ 2.92
CPSF4-204ENST00000436336 CLTCL1P53675 1640 aa33.31■■■□□ 2.92
CPSF4-204ENST00000436336 NOS1P29475 1434 aa33.29■■■□□ 2.92
CPSF4-204ENST00000436336 KIF1BO60333 1816 aa33.25■■■□□ 2.91
CPSF4-204ENST00000436336 SYNMO15061 1565 aa33.25■■■□□ 2.91
CPSF4-204ENST00000436336 ZMYM3Q14202 1370 aa33.25■■■□□ 2.91
CPSF4-204ENST00000436336 ADAMTSL3P82987 1691 aa33.25■■■□□ 2.91
CPSF4-204ENST00000436336 PIK3C2BO00750 1634 aa33.22■■■□□ 2.91
CPSF4-204ENST00000436336 ERVK-7P63135 1459 aa33.22■■■□□ 2.91
CPSF4-204ENST00000436336 SPATA31D1Q6ZQQ2 1576 aa33.22■■■□□ 2.91
CPSF4-204ENST00000436336 MADDQ8WXG6 1647 aa33.21■■■□□ 2.91
CPSF4-204ENST00000436336 UGGT1Q9NYU2 1555 aa33.21■■■□□ 2.91
CPSF4-204ENST00000436336 C3P01024 1663 aa33.21■■■□□ 2.91
CPSF4-204ENST00000436336 NEURL4Q96JN8 1562 aa33.18■■■□□ 2.9
CPSF4-204ENST00000436336 RIMS1Q86UR5 1692 aaKnown RBP33.17■■■□□ 2.9
CPSF4-204ENST00000436336 FBXO31Q5XUX0 539 aaPredicted RBP33.14■■■□□ 2.9
CPSF4-204ENST00000436336 L3MBTL2Q969R5 705 aa33.14■■■□□ 2.9
CPSF4-204ENST00000436336 SPATA31E1Q6ZUB1 1445 aa33.13■■■□□ 2.89
CPSF4-204ENST00000436336 PPP1R15AO75807 674 aaPredicted RBP33.11■■■□□ 2.89
CPSF4-204ENST00000436336 SLC52A1Q9NWF4 448 aa33.11■■■□□ 2.89
CPSF4-204ENST00000436336 ADGRB3O60242 1522 aa33.08■■■□□ 2.89
CPSF4-204ENST00000436336 RGL3Q3MIN7 710 aa33.03■■■□□ 2.88
CPSF4-204ENST00000436336 IDI1Q13907 227 aa33.02■■■□□ 2.88
CPSF4-204ENST00000436336 MYO5BQ9ULV0 1848 aa33.02■■■□□ 2.88
CPSF4-204ENST00000436336 IFT172Q9UG01 1749 aa33.01■■■□□ 2.88
CPSF4-204ENST00000436336 TMEM131LA2VDJ0 1609 aa33.01■■■□□ 2.87
CPSF4-204ENST00000436336 TNRQ92752 1358 aa33.01■■■□□ 2.87
CPSF4-204ENST00000436336 CEBPAP49715 358 aaPredicted RBP33■■■□□ 2.87
CPSF4-204ENST00000436336 DCAF11Q8TEB1 546 aa32.97■■■□□ 2.87
CPSF4-204ENST00000436336 KDM5AP29375 1690 aaKnown RBP32.96■■■□□ 2.87
CPSF4-204ENST00000436336 CHGAP10645 457 aaKnown RBP32.96■■■□□ 2.87
CPSF4-204ENST00000436336 PPLO60437 1756 aa32.95■■■□□ 2.87
CPSF4-204ENST00000436336 UHRF1BP1Q6BDS2 1440 aa32.93■■■□□ 2.86
CPSF4-204ENST00000436336 NLRP1Q9C000 1473 aa32.92■■■□□ 2.86
CPSF4-204ENST00000436336 STAC3Q96MF2 364 aa32.92■■■□□ 2.86
CPSF4-204ENST00000436336 KDM2AQ9Y2K7 1162 aa32.9■■■□□ 2.86
CPSF4-204ENST00000436336 ZNF326Q5BKZ1 582 aaKnown RBP32.89■■■□□ 2.86
CPSF4-204ENST00000436336 MYO3AQ8NEV4 1616 aa32.89■■■□□ 2.86
CPSF4-204ENST00000436336 PTPRMP28827 1452 aa32.88■■■□□ 2.85
CPSF4-204ENST00000436336 PLPPR3Q6T4P5 718 aa32.88■■■□□ 2.85
CPSF4-204ENST00000436336 UBR1Q8IWV7 1749 aa32.88■■■□□ 2.85
CPSF4-204ENST00000436336 RPGRIP1LQ68CZ1 1315 aa32.88■■■□□ 2.85
CPSF4-204ENST00000436336 MYOM2P54296 1465 aa32.87■■■□□ 2.85
CPSF4-204ENST00000436336 SETD1BQ9UPS6 1966 aaKnown RBP32.87■■■□□ 2.85
CPSF4-204ENST00000436336 NBPF8Q3BBV2 869 aa32.86■■■□□ 2.85
CPSF4-204ENST00000436336 A2ML1A8K2U0 1454 aa32.86■■■□□ 2.85
CPSF4-204ENST00000436336 NEXMIFQ5QGS0 1516 aa32.86■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms