RNA–Protein interactions for RNA: ENST00000436324.5

HMGN1-207, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-207ENST00000436324 PTPRKQ15262 1439 aa28.34■■■□□ 2.13
HMGN1-207ENST00000436324 SHANK2Q9UPX8 1470 aa28.3■■■□□ 2.12
HMGN1-207ENST00000436324 KIF15Q9NS87 1388 aa28.3■■■□□ 2.12
HMGN1-207ENST00000436324 FBXO31Q5XUX0 539 aaPredicted RBP28.29■■■□□ 2.12
HMGN1-207ENST00000436324 DNMT1P26358 1616 aaKnown RBP28.29■■■□□ 2.12
HMGN1-207ENST00000436324 KDM5DQ9BY66 1539 aa28.28■■■□□ 2.12
HMGN1-207ENST00000436324 ILDR1Q86SU0 546 aaPredicted RBP28.28■■■□□ 2.12
HMGN1-207ENST00000436324 DUOX2Q9NRD8 1548 aa28.28■■■□□ 2.12
HMGN1-207ENST00000436324 CROCC2H7BZ55 1655 aa28.27■■■□□ 2.12
HMGN1-207ENST00000436324 ANKRD30AQ9BXX3 1397 aa28.23■■■□□ 2.11
HMGN1-207ENST00000436324 RNF17Q9BXT8 1623 aaKnown RBP28.21■■■□□ 2.11
HMGN1-207ENST00000436324 DMRT2Q9Y5R5 561 aa28.21■■■□□ 2.11
HMGN1-207ENST00000436324 FAM135AQ9P2D6 1515 aa28.21■■■□□ 2.11
HMGN1-207ENST00000436324 EIF2AK4Q9P2K8 1649 aaKnown RBP28.21■■■□□ 2.11
HMGN1-207ENST00000436324 STRCQ7RTU9 1775 aa28.2■■■□□ 2.11
HMGN1-207ENST00000436324 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.2■■■□□ 2.11e-6■■□□□ 12.8
HMGN1-207ENST00000436324 PZPP20742 1482 aa28.2■■■□□ 2.1
HMGN1-207ENST00000436324 TNRQ92752 1358 aa28.19■■■□□ 2.1
HMGN1-207ENST00000436324 MYO3AQ8NEV4 1616 aa28.18■■■□□ 2.1
HMGN1-207ENST00000436324 ABCC3O15438 1527 aa28.18■■■□□ 2.1
HMGN1-207ENST00000436324 ERBINQ96RT1 1412 aa28.18■■■□□ 2.1
HMGN1-207ENST00000436324 CAMSAP1Q5T5Y3 1602 aa28.16■■■□□ 2.1
HMGN1-207ENST00000436324 NCOA1Q15788 1441 aa28.16■■■□□ 2.1
HMGN1-207ENST00000436324 MROH1Q8NDA8 1641 aa28.15■■■□□ 2.1
HMGN1-207ENST00000436324 CEP170BQ9Y4F5 1589 aaPredicted RBP28.15■■■□□ 2.1
HMGN1-207ENST00000436324 NCKAP5LQ9HCH0 1330 aa28.15■■■□□ 2.1
HMGN1-207ENST00000436324 A2ML1A8K2U0 1454 aa28.11■■■□□ 2.09
HMGN1-207ENST00000436324 ZNF142P52746 1687 aaPredicted RBP28.1■■■□□ 2.09
HMGN1-207ENST00000436324 ITGAEP38570 1179 aa28.1■■■□□ 2.09
HMGN1-207ENST00000436324 PTPRTO14522 1441 aa28.09■■■□□ 2.09
HMGN1-207ENST00000436324 ADGRL2O95490 1459 aa28.09■■■□□ 2.09
HMGN1-207ENST00000436324 ZC3H13Q5T200 1668 aaKnown RBP28.09■■■□□ 2.09
HMGN1-207ENST00000436324 CEP152O94986 1710 aa28.08■■■□□ 2.09
HMGN1-207ENST00000436324 KANK1Q14678 1352 aa28.07■■■□□ 2.08
HMGN1-207ENST00000436324 PRDM15P57071 1507 aaPredicted RBP28.06■■■□□ 2.08
HMGN1-207ENST00000436324 CERKQ8TCT0 537 aa28.05■■■□□ 2.08
HMGN1-207ENST00000436324 FBXO41Q8TF61 875 aa28.05■■■□□ 2.08
HMGN1-207ENST00000436324 PKD2Q13563 968 aa28.04■■■□□ 2.08
HMGN1-207ENST00000436324 ERVK-7P63135 1459 aa28.02■■■□□ 2.08
HMGN1-207ENST00000436324 PLA2R1Q13018 1463 aa28.02■■■□□ 2.08
HMGN1-207ENST00000436324 ANKRD50Q9ULJ7 1429 aa28.01■■■□□ 2.08
HMGN1-207ENST00000436324 NLRP1Q9C000 1473 aa28.01■■■□□ 2.07
HMGN1-207ENST00000436324 DEPDC5O75140 1603 aa28■■■□□ 2.07
HMGN1-207ENST00000436324 SPATA31D1Q6ZQQ2 1576 aa27.99■■■□□ 2.07
HMGN1-207ENST00000436324 THEMISQ8N1K5 641 aaPredicted RBP27.99■■■□□ 2.07
HMGN1-207ENST00000436324 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.99■■■□□ 2.07
HMGN1-207ENST00000436324 CFAP65Q6ZU64 1925 aaKnown RBP27.98■■■□□ 2.07
HMGN1-207ENST00000436324 UGGT1Q9NYU2 1555 aa27.96■■■□□ 2.07
HMGN1-207ENST00000436324 ARHGAP31Q2M1Z3 1444 aa27.96■■■□□ 2.07
HMGN1-207ENST00000436324 ANKLE2Q86XL3 938 aa27.93■■■□□ 2.06
HMGN1-207ENST00000436324 ROCK1Q13464 1354 aa27.93■■■□□ 2.06
HMGN1-207ENST00000436324 VWDEQ8N2E2 1590 aa27.91■■■□□ 2.06
HMGN1-207ENST00000436324 LMTK2Q8IWU2 1503 aa27.9■■■□□ 2.06
HMGN1-207ENST00000436324 ZNF335Q9H4Z2 1342 aaPredicted RBP27.9■■■□□ 2.06
HMGN1-207ENST00000436324 RRBP1Q9P2E9 1410 aaKnown RBP27.86■■■□□ 2.05
HMGN1-207ENST00000436324 LTBP4Q8N2S1 1624 aa27.85■■■□□ 2.05
HMGN1-207ENST00000436324 STAG3Q9UJ98 1225 aa27.83■■■□□ 2.05
HMGN1-207ENST00000436324 EFCAB6Q5THR3 1501 aa27.82■■■□□ 2.04
HMGN1-207ENST00000436324 NEURL4Q96JN8 1562 aa27.82■■■□□ 2.04
HMGN1-207ENST00000436324 POLR1AO95602 1720 aaPredicted RBP27.81■■■□□ 2.04
HMGN1-207ENST00000436324 IDI1Q13907 227 aa27.81■■■□□ 2.04
HMGN1-207ENST00000436324 NPHP4O75161 1426 aaPredicted RBP27.79■■■□□ 2.04
HMGN1-207ENST00000436324 UBR1Q8IWV7 1749 aa27.78■■■□□ 2.04
HMGN1-207ENST00000436324 UNC13BO14795 1591 aa27.77■■■□□ 2.04
HMGN1-207ENST00000436324 NOS1P29475 1434 aa27.77■■■□□ 2.04
HMGN1-207ENST00000436324 NUP155O75694 1391 aa27.77■■■□□ 2.04
HMGN1-207ENST00000436324 TXNDC2Q86VQ3 553 aa27.76■■■□□ 2.03
HMGN1-207ENST00000436324 PIK3C2BO00750 1634 aa27.75■■■□□ 2.03
HMGN1-207ENST00000436324 SYNMO15061 1565 aa27.75■■■□□ 2.03
HMGN1-207ENST00000436324 LTKP29376 864 aa27.75■■■□□ 2.03
HMGN1-207ENST00000436324 MED14O60244 1454 aa27.74■■■□□ 2.03
HMGN1-207ENST00000436324 TET3O43151 1660 aa27.73■■■□□ 2.03
HMGN1-207ENST00000436324 RPRD2Q5VT52 1461 aaKnown RBP27.72■■■□□ 2.03
HMGN1-207ENST00000436324 SLC52A1Q9NWF4 448 aa27.72■■■□□ 2.03
HMGN1-207ENST00000436324 EID1Q9Y6B2 187 aa27.72■■■□□ 2.03
HMGN1-207ENST00000436324 SCAF11Q99590 1463 aaKnown RBP27.7■■■□□ 2.03
HMGN1-207ENST00000436324 ARHGAP23Q9P227 1491 aa27.7■■■□□ 2.02
HMGN1-207ENST00000436324 TMEM2Q9UHN6 1383 aa27.69■■■□□ 2.02
HMGN1-207ENST00000436324 SLIT1O75093 1534 aa27.68■■■□□ 2.02
HMGN1-207ENST00000436324 IQGAP1P46940 1657 aa27.67■■■□□ 2.02
HMGN1-207ENST00000436324 GCC2Q8IWJ2 1684 aa27.67■■■□□ 2.02
HMGN1-207ENST00000436324 IQGAP3Q86VI3 1631 aa27.67■■■□□ 2.02
HMGN1-207ENST00000436324 NAIPQ13075 1403 aa27.66■■■□□ 2.02
HMGN1-207ENST00000436324 IQSEC2Q5JU85 1478 aa27.65■■■□□ 2.02
HMGN1-207ENST00000436324 CHGAP10645 457 aaKnown RBP27.64■■■□□ 2.02
HMGN1-207ENST00000436324 E9PCH4 1651 aa27.63■■■□□ 2.01
HMGN1-207ENST00000436324 ADGRB3O60242 1522 aa27.62■■■□□ 2.01
HMGN1-207ENST00000436324 UBAP1LF5GYI3 381 aa27.61■■■□□ 2.01
HMGN1-207ENST00000436324 SENP3Q9H4L4 574 aaPredicted RBP27.6■■■□□ 2.01
HMGN1-207ENST00000436324 CPS1P31327 1500 aa27.59■■■□□ 2.01
HMGN1-207ENST00000436324 TRIM52Q96A61 297 aa27.59■■■□□ 2.01
HMGN1-207ENST00000436324 KDM5AP29375 1690 aaKnown RBP27.58■■■□□ 2.01
HMGN1-207ENST00000436324 BCANQ96GW7 911 aa27.57■■■□□ 2
HMGN1-207ENST00000436324 HFM1A2PYH4 1435 aa27.56■■■□□ 2
HMGN1-207ENST00000436324 SLC26A8Q96RN1 970 aa27.54■■■□□ 2
HMGN1-207ENST00000436324 PPP1R15AO75807 674 aaPredicted RBP27.52■■■□□ 2
HMGN1-207ENST00000436324 RIMS2Q9UQ26 1411 aa27.51■■□□□ 1.99
HMGN1-207ENST00000436324 NUTM2DQ5VT03 806 aaPredicted RBP27.51■■□□□ 1.99
HMGN1-207ENST00000436324 TMEM131LA2VDJ0 1609 aa27.5■■□□□ 1.99
HMGN1-207ENST00000436324 HDGFP51858 240 aaKnown RBP27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms