RNA–Protein interactions for RNA: ENST00000434813.3

CLK1-205, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 2,026 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-205ENST00000434813 ASXL2Q76L83 1435 aa25.69■■□□□ 1.7
CLK1-205ENST00000434813 ARID4BQ4LE39 1312 aaPredicted RBP25.68■■□□□ 1.7
CLK1-205ENST00000434813 ZNF326Q5BKZ1 582 aaKnown RBP25.66■■□□□ 1.7
CLK1-205ENST00000434813 ARAP3Q8WWN8 1544 aa25.66■■□□□ 1.7
CLK1-205ENST00000434813 IQGAP3Q86VI3 1631 aa25.64■■□□□ 1.7
CLK1-205ENST00000434813 CCDC184Q52MB2 194 aa25.63■■□□□ 1.69
CLK1-205ENST00000434813 DHX29Q7Z478 1369 aaKnown RBP25.62■■□□□ 1.69
CLK1-205ENST00000434813 DUOX2Q9NRD8 1548 aa25.61■■□□□ 1.69
CLK1-205ENST00000434813 ABCA9Q8IUA7 1624 aa25.61■■□□□ 1.69
CLK1-205ENST00000434813 ABCC1P33527 1531 aa25.6■■□□□ 1.69
CLK1-205ENST00000434813 MAGI2Q86UL8 1455 aa25.6■■□□□ 1.69
CLK1-205ENST00000434813 BCANQ96GW7 911 aa25.59■■□□□ 1.69
CLK1-205ENST00000434813 ROCK2O75116 1388 aaKnown RBP25.58■■□□□ 1.69
CLK1-205ENST00000434813 CCDC144AA2RUR9 1427 aa25.58■■□□□ 1.68
CLK1-205ENST00000434813 MRS2Q9HD23 443 aa25.58■■□□□ 1.68
CLK1-205ENST00000434813 ERBINQ96RT1 1412 aa25.57■■□□□ 1.68
CLK1-205ENST00000434813 FANCAO15360 1455 aa25.56■■□□□ 1.68
CLK1-205ENST00000434813 CARD11Q9BXL7 1154 aa25.56■■□□□ 1.68
CLK1-205ENST00000434813 TRPM1Q7Z4N2 1603 aa25.56■■□□□ 1.68
CLK1-205ENST00000434813 PLA2R1Q13018 1463 aa25.54■■□□□ 1.68
CLK1-205ENST00000434813 TSHZ2Q9NRE2 1034 aa25.53■■□□□ 1.68
CLK1-205ENST00000434813 DCAF11Q8TEB1 546 aa25.53■■□□□ 1.68
CLK1-205ENST00000434813 PRAG1Q86YV5 1406 aa25.52■■□□□ 1.68
CLK1-205ENST00000434813 TRAPPC8Q9Y2L5 1435 aa25.51■■□□□ 1.67
CLK1-205ENST00000434813 ATP10AO60312 1499 aa25.51■■□□□ 1.67
CLK1-205ENST00000434813 ZBED9Q6R2W3 1325 aa25.5■■□□□ 1.67
CLK1-205ENST00000434813 E9PCH4 1651 aa25.49■■□□□ 1.67
CLK1-205ENST00000434813 LAMC1P11047 1609 aa25.49■■□□□ 1.67
CLK1-205ENST00000434813 FAM9BQ8IZU0 186 aa25.48■■□□□ 1.67
CLK1-205ENST00000434813 KDM2AQ9Y2K7 1162 aa25.48■■□□□ 1.67
CLK1-205ENST00000434813 SPAG9O60271 1321 aaKnown RBP25.48■■□□□ 1.67
CLK1-205ENST00000434813 A2MP01023 1474 aa25.47■■□□□ 1.67
CLK1-205ENST00000434813 ADGRL1O94910 1474 aa25.45■■□□□ 1.67
CLK1-205ENST00000434813 AFAP1Q8N556 730 aa25.45■■□□□ 1.66
CLK1-205ENST00000434813 EIF2AK4Q9P2K8 1649 aaKnown RBP25.45■■□□□ 1.66
CLK1-205ENST00000434813 GPRASP1Q5JY77 1395 aa25.44■■□□□ 1.66
CLK1-205ENST00000434813 RTEL1-TNFRSF6BF6WH68 1400 aa25.44■■□□□ 1.66
CLK1-205ENST00000434813 ST20-MTHFSA0A0A6YYL1 179 aa25.43■■□□□ 1.66
CLK1-205ENST00000434813 POLR3GLQ9BT43 218 aa25.43■■□□□ 1.66
CLK1-205ENST00000434813 CD109Q6YHK3 1445 aa25.43■■□□□ 1.66
CLK1-205ENST00000434813 SCAPERQ9BY12 1400 aa25.42■■□□□ 1.66
CLK1-205ENST00000434813 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.41■■□□□ 1.666e-9■■□□□ 11.5
CLK1-205ENST00000434813 ZFYVE16Q7Z3T8 1539 aa25.41■■□□□ 1.66
CLK1-205ENST00000434813 PRDM15P57071 1507 aaPredicted RBP25.4■■□□□ 1.66
CLK1-205ENST00000434813 TRHP20396 242 aaPredicted RBP25.37■■□□□ 1.65
CLK1-205ENST00000434813 KTN1Q86UP2 1357 aaKnown RBP25.37■■□□□ 1.65
CLK1-205ENST00000434813 CFAP74Q9C0B2 1584 aa25.36■■□□□ 1.65
CLK1-205ENST00000434813 MYT1LQ9UL68 1186 aa25.36■■□□□ 1.65
CLK1-205ENST00000434813 DEPDC5O75140 1603 aa25.35■■□□□ 1.65
CLK1-205ENST00000434813 ERICH6BQ5W0A0 696 aa25.35■■□□□ 1.65
CLK1-205ENST00000434813 RNF17Q9BXT8 1623 aaKnown RBP25.35■■□□□ 1.65
CLK1-205ENST00000434813 ATP7AQ04656 1500 aa25.34■■□□□ 1.65
CLK1-205ENST00000434813 INO80Q9ULG1 1556 aaPredicted RBP25.32■■□□□ 1.64
CLK1-205ENST00000434813 COL17A1Q9UMD9 1497 aaPredicted RBP25.32■■□□□ 1.64
CLK1-205ENST00000434813 FAM69CQ0P6D2 419 aa25.32■■□□□ 1.64
CLK1-205ENST00000434813 RGL3Q3MIN7 710 aa25.32■■□□□ 1.64
CLK1-205ENST00000434813 ZNF518AQ6AHZ1 1483 aa25.31■■□□□ 1.64
CLK1-205ENST00000434813 TRPM2O94759 1503 aa25.3■■□□□ 1.64
CLK1-205ENST00000434813 NBPF1Q3BBV0 1214 aa25.27■■□□□ 1.64
CLK1-205ENST00000434813 BRD4O60885 1362 aaPredicted RBP25.27■■□□□ 1.64
CLK1-205ENST00000434813 SMG6Q86US8 1419 aaKnown RBP25.27■■□□□ 1.64
CLK1-205ENST00000434813 SPHKAPQ2M3C7 1700 aa25.27■■□□□ 1.64
CLK1-205ENST00000434813 TET3O43151 1660 aa25.26■■□□□ 1.63
CLK1-205ENST00000434813 CEP152O94986 1710 aa25.26■■□□□ 1.63
CLK1-205ENST00000434813 RALBP1Q15311 655 aa25.26■■□□□ 1.63
CLK1-205ENST00000434813 PNISRQ8TF01 805 aaKnown RBP25.25■■□□□ 1.63
CLK1-205ENST00000434813 MYBBP1AQ9BQG0 1328 aaKnown RBP25.25■■□□□ 1.63
CLK1-205ENST00000434813 MADDQ8WXG6 1647 aa25.24■■□□□ 1.63
CLK1-205ENST00000434813 IRX6P78412 446 aaPredicted RBP25.24■■□□□ 1.63
CLK1-205ENST00000434813 VWDEQ8N2E2 1590 aa25.24■■□□□ 1.63
CLK1-205ENST00000434813 NEO1Q92859 1461 aa25.24■■□□□ 1.63
CLK1-205ENST00000434813 LRPPRCP42704 1394 aaKnown RBP25.23■■□□□ 1.63
CLK1-205ENST00000434813 PTPRTO14522 1441 aa25.23■■□□□ 1.63
CLK1-205ENST00000434813 POGZQ7Z3K3 1410 aa25.23■■□□□ 1.63
CLK1-205ENST00000434813 CNGB1Q14028 1251 aaPredicted RBP25.23■■□□□ 1.63
CLK1-205ENST00000434813 TMC1Q8TDI8 760 aa25.22■■□□□ 1.63
CLK1-205ENST00000434813 DIP2BQ9P265 1576 aa25.21■■□□□ 1.63
CLK1-205ENST00000434813 PARD3Q8TEW0 1356 aa25.2■■□□□ 1.63
CLK1-205ENST00000434813 TESK2Q96S53 571 aa25.2■■□□□ 1.63
CLK1-205ENST00000434813 CLTCL1P53675 1640 aa25.19■■□□□ 1.62
CLK1-205ENST00000434813 DISP3Q9P2K9 1392 aa25.19■■□□□ 1.62
CLK1-205ENST00000434813 IQGAP1P46940 1657 aa25.18■■□□□ 1.62
CLK1-205ENST00000434813 MAP3K4Q9Y6R4 1608 aa25.18■■□□□ 1.62
CLK1-205ENST00000434813 GLI2P10070 1586 aa25.18■■□□□ 1.62
CLK1-205ENST00000434813 PPP4R2Q9NY27 417 aa25.18■■□□□ 1.62
CLK1-205ENST00000434813 KIDINS220Q9ULH0 1771 aa25.17■■□□□ 1.62
CLK1-205ENST00000434813 KIF3BO15066 747 aa25.17■■□□□ 1.62
CLK1-205ENST00000434813 NEURL4Q96JN8 1562 aa25.16■■□□□ 1.62
CLK1-205ENST00000434813 KANK1Q14678 1352 aa25.16■■□□□ 1.62
CLK1-205ENST00000434813 MYT1Q01538 1121 aa25.15■■□□□ 1.62
CLK1-205ENST00000434813 NUDCQ9Y266 331 aa25.15■■□□□ 1.62
CLK1-205ENST00000434813 MROH1Q8NDA8 1641 aa25.15■■□□□ 1.62
CLK1-205ENST00000434813 MLH3Q9UHC1 1453 aa25.14■■□□□ 1.62
CLK1-205ENST00000434813 WASHC2CQ9Y4E1 1318 aa25.14■■□□□ 1.61
CLK1-205ENST00000434813 PER1O15534 1290 aaPredicted RBP25.13■■□□□ 1.61
CLK1-205ENST00000434813 KIF13AQ9H1H9 1805 aa25.13■■□□□ 1.61
CLK1-205ENST00000434813 STAC3Q96MF2 364 aa25.13■■□□□ 1.61
CLK1-205ENST00000434813 HECW2Q9P2P5 1572 aa25.13■■□□□ 1.61
CLK1-205ENST00000434813 NLRP13Q86W25 1043 aa25.12■■□□□ 1.61
CLK1-205ENST00000434813 TMF1P82094 1093 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms