RNA–Protein interactions for RNA: ENST00000428843.5

PTPN18-205, Transcript of protein tyrosine phosphatase, non-receptor type 18, human

TSL 3

Gene PTPN18, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN18-205	ENST00000428843	PTPRM	P28827	1452 aa		33.73	■■■□□ 2.99
PTPN18-205	ENST00000428843	ESF1	Q9H501	851 aa	Known RBP	33.72	■■■□□ 2.99
PTPN18-205	ENST00000428843	PPP6R1	Q9UPN7	881 aa		33.72	■■■□□ 2.99
PTPN18-205	ENST00000428843	CLTC	Q00610	1675 aa	Known RBP	33.71	■■■□□ 2.99
PTPN18-205	ENST00000428843	DEPDC5	O75140	1603 aa		33.7	■■■□□ 2.99
PTPN18-205	ENST00000428843	GCC2	Q8IWJ2	1684 aa		33.7	■■■□□ 2.99
PTPN18-205	ENST00000428843	CNTLN	Q9NXG0	1405 aa		33.7	■■■□□ 2.98
PTPN18-205	ENST00000428843	NAIP	Q13075	1403 aa		33.68	■■■□□ 2.98
PTPN18-205	ENST00000428843	HFM1	A2PYH4	1435 aa		33.66	■■■□□ 2.98
PTPN18-205	ENST00000428843	PRDM15	P57071	1507 aa	Predicted RBP	33.66	■■■□□ 2.98
PTPN18-205	ENST00000428843	KDM5D	Q9BY66	1539 aa		33.66	■■■□□ 2.98
PTPN18-205	ENST00000428843	MROH2A	A6NES4	1674 aa		33.65	■■■□□ 2.98
PTPN18-205	ENST00000428843	FAM135A	Q9P2D6	1515 aa		33.65	■■■□□ 2.98
PTPN18-205	ENST00000428843	AEBP2	Q6ZN18	517 aa	Predicted RBP	33.63	■■■□□ 2.97
PTPN18-205	ENST00000428843	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	33.63	■■■□□ 2.97	2e-8	■■■□□ 14.6
PTPN18-205	ENST00000428843	WASHC2C	Q9Y4E1	1318 aa		33.62	■■■□□ 2.97
PTPN18-205	ENST00000428843	C3	P01024	1663 aa		33.61	■■■□□ 2.97
PTPN18-205	ENST00000428843	ZC3H13	Q5T200	1668 aa	Known RBP	33.61	■■■□□ 2.97
PTPN18-205	ENST00000428843	ABCC3	O15438	1527 aa		33.6	■■■□□ 2.97
PTPN18-205	ENST00000428843	CEP152	O94986	1710 aa		33.6	■■■□□ 2.97
PTPN18-205	ENST00000428843	PLPPR3	Q6T4P5	718 aa		33.6	■■■□□ 2.97
PTPN18-205	ENST00000428843	UNC13B	O14795	1591 aa		33.59	■■■□□ 2.97
PTPN18-205	ENST00000428843	ZMYM3	Q14202	1370 aa		33.59	■■■□□ 2.97
PTPN18-205	ENST00000428843	CEBPA	P49715	358 aa	Predicted RBP	33.58	■■■□□ 2.97
PTPN18-205	ENST00000428843	KANK1	Q14678	1352 aa		33.57	■■■□□ 2.96
PTPN18-205	ENST00000428843	VWDE	Q8N2E2	1590 aa		33.56	■■■□□ 2.96
PTPN18-205	ENST00000428843	CAMSAP1	Q5T5Y3	1602 aa		33.5	■■■□□ 2.95
PTPN18-205	ENST00000428843	LMTK2	Q8IWU2	1503 aa		33.48	■■■□□ 2.95
PTPN18-205	ENST00000428843	IQGAP3	Q86VI3	1631 aa		33.45	■■■□□ 2.95
PTPN18-205	ENST00000428843	SETD5	Q9C0A6	1442 aa		33.45	■■■□□ 2.94
PTPN18-205	ENST00000428843	PZP	P20742	1482 aa		33.44	■■■□□ 2.94
PTPN18-205	ENST00000428843	NUP155	O75694	1391 aa		33.44	■■■□□ 2.94
PTPN18-205	ENST00000428843	TET3	O43151	1660 aa		33.4	■■■□□ 2.94
PTPN18-205	ENST00000428843	NPAT	Q14207	1427 aa		33.4	■■■□□ 2.94
PTPN18-205	ENST00000428843	ARHGAP31	Q2M1Z3	1444 aa		33.39	■■■□□ 2.94
PTPN18-205	ENST00000428843	TRIM26	Q12899	539 aa	Predicted RBP	33.39	■■■□□ 2.94
PTPN18-205	ENST00000428843	EFCAB6	Q5THR3	1501 aa		33.38	■■■□□ 2.93
PTPN18-205	ENST00000428843	SETD1B	Q9UPS6	1966 aa	Known RBP	33.38	■■■□□ 2.93
PTPN18-205	ENST00000428843	CFAP65	Q6ZU64	1925 aa	Known RBP	33.38	■■■□□ 2.93
PTPN18-205	ENST00000428843	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.38	■■■□□ 2.93
PTPN18-205	ENST00000428843	TRIM52	Q96A61	297 aa		33.36	■■■□□ 2.93
PTPN18-205	ENST00000428843	RAB3GAP2	Q9H2M9	1393 aa		33.34	■■■□□ 2.93
PTPN18-205	ENST00000428843	PREX1	Q8TCU6	1659 aa		33.33	■■■□□ 2.93
PTPN18-205	ENST00000428843	ERVK-7	P63135	1459 aa		33.31	■■■□□ 2.92
PTPN18-205	ENST00000428843	SPATA31D1	Q6ZQQ2	1576 aa		33.31	■■■□□ 2.92
PTPN18-205	ENST00000428843		E9PCH4	1651 aa		33.29	■■■□□ 2.92
PTPN18-205	ENST00000428843	TNR	Q92752	1358 aa		33.29	■■■□□ 2.92
PTPN18-205	ENST00000428843	RPRD2	Q5VT52	1461 aa	Known RBP	33.27	■■■□□ 2.92
PTPN18-205	ENST00000428843	MYO3A	Q8NEV4	1616 aa		33.26	■■■□□ 2.91
PTPN18-205	ENST00000428843	UHRF1BP1	Q6BDS2	1440 aa		33.26	■■■□□ 2.91
PTPN18-205	ENST00000428843	LMTK3	Q96Q04	1460 aa		33.25	■■■□□ 2.91
PTPN18-205	ENST00000428843	ACIN1	Q9UKV3	1341 aa	Known RBP	33.24	■■■□□ 2.91
PTPN18-205	ENST00000428843	HRC	P23327	699 aa		33.2	■■■□□ 2.91
PTPN18-205	ENST00000428843	NOS1	P29475	1434 aa		33.19	■■■□□ 2.9
PTPN18-205	ENST00000428843	SLC4A1AP	Q9BWU0	796 aa	Known RBP	33.19	■■■□□ 2.9
PTPN18-205	ENST00000428843	ZNF142	P52746	1687 aa	Predicted RBP	33.18	■■■□□ 2.9
PTPN18-205	ENST00000428843	SYNM	O15061	1565 aa		33.17	■■■□□ 2.9
PTPN18-205	ENST00000428843	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.16	■■■□□ 2.9
PTPN18-205	ENST00000428843	NLRP1	Q9C000	1473 aa		33.15	■■■□□ 2.9
PTPN18-205	ENST00000428843	PKD2	Q13563	968 aa		33.14	■■■□□ 2.9
PTPN18-205	ENST00000428843	MPHOSPH9	Q99550	1183 aa		33.14	■■■□□ 2.9
PTPN18-205	ENST00000428843	A2ML1	A8K2U0	1454 aa		33.13	■■■□□ 2.89
PTPN18-205	ENST00000428843	SPHKAP	Q2M3C7	1700 aa		33.11	■■■□□ 2.89
PTPN18-205	ENST00000428843	HSPA2	P54652	639 aa		33.1	■■■□□ 2.89
PTPN18-205	ENST00000428843	PTPRT	O14522	1441 aa		33.06	■■■□□ 2.88
PTPN18-205	ENST00000428843	IDI1	Q13907	227 aa		33.05	■■■□□ 2.88
PTPN18-205	ENST00000428843	PIK3C2B	O00750	1634 aa		33.05	■■■□□ 2.88
PTPN18-205	ENST00000428843	UGGT1	Q9NYU2	1555 aa		33.04	■■■□□ 2.88
PTPN18-205	ENST00000428843	FOXD1	Q16676	465 aa		33.04	■■■□□ 2.88
PTPN18-205	ENST00000428843	SLC52A1	Q9NWF4	448 aa		33.03	■■■□□ 2.88
PTPN18-205	ENST00000428843	UBR1	Q8IWV7	1749 aa		33.02	■■■□□ 2.88
PTPN18-205	ENST00000428843	TRPM2	O94759	1503 aa		33	■■■□□ 2.87
PTPN18-205	ENST00000428843	PLA2R1	Q13018	1463 aa		32.99	■■■□□ 2.87
PTPN18-205	ENST00000428843	PCGF6	Q9BYE7	350 aa		32.97	■■■□□ 2.87
PTPN18-205	ENST00000428843	KDM5A	P29375	1690 aa	Known RBP	32.96	■■■□□ 2.87
PTPN18-205	ENST00000428843	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.95	■■■□□ 2.87
PTPN18-205	ENST00000428843	ADGRB3	O60242	1522 aa		32.95	■■■□□ 2.87
PTPN18-205	ENST00000428843	CLTCL1	P53675	1640 aa		32.95	■■■□□ 2.86
PTPN18-205	ENST00000428843	STAG3	Q9UJ98	1225 aa		32.94	■■■□□ 2.86
PTPN18-205	ENST00000428843	MYO5B	Q9ULV0	1848 aa		32.91	■■■□□ 2.86
PTPN18-205	ENST00000428843	TMEM131L	A2VDJ0	1609 aa		32.91	■■■□□ 2.86
PTPN18-205	ENST00000428843	STRC	Q7RTU9	1775 aa		32.91	■■■□□ 2.86
PTPN18-205	ENST00000428843	CHGA	P10645	457 aa	Known RBP	32.87	■■■□□ 2.85
PTPN18-205	ENST00000428843	KIF1B	O60333	1816 aa		32.84	■■■□□ 2.85
PTPN18-205	ENST00000428843	NCKAP5L	Q9HCH0	1330 aa		32.83	■■■□□ 2.85
PTPN18-205	ENST00000428843	SLIT1	O75093	1534 aa		32.83	■■■□□ 2.85
PTPN18-205	ENST00000428843	POLR1A	O95602	1720 aa	Predicted RBP	32.82	■■■□□ 2.85
PTPN18-205	ENST00000428843	ARHGAP23	Q9P227	1491 aa		32.82	■■■□□ 2.84
PTPN18-205	ENST00000428843	CCDC144A	A2RUR9	1427 aa		32.82	■■■□□ 2.84
PTPN18-205	ENST00000428843	ANKRD30B	Q9BXX2	1392 aa		32.81	■■■□□ 2.84
PTPN18-205	ENST00000428843	TMEM2	Q9UHN6	1383 aa		32.81	■■■□□ 2.84
PTPN18-205	ENST00000428843	ANKLE2	Q86XL3	938 aa		32.79	■■■□□ 2.84
PTPN18-205	ENST00000428843	NEURL4	Q96JN8	1562 aa		32.75	■■■□□ 2.83
PTPN18-205	ENST00000428843	DHX57	Q6P158	1386 aa	Known RBP	32.75	■■■□□ 2.83
PTPN18-205	ENST00000428843	SCAF11	Q99590	1463 aa	Known RBP	32.74	■■■□□ 2.83
PTPN18-205	ENST00000428843	LTK	P29376	864 aa		32.73	■■■□□ 2.83
PTPN18-205	ENST00000428843	TXNDC2	Q86VQ3	553 aa		32.73	■■■□□ 2.83
PTPN18-205	ENST00000428843	ZFYVE9	O95405	1425 aa		32.72	■■■□□ 2.83
PTPN18-205	ENST00000428843	RIMS2	Q9UQ26	1411 aa		32.72	■■■□□ 2.83
PTPN18-205	ENST00000428843	EID1	Q9Y6B2	187 aa		32.72	■■■□□ 2.83

Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms