RNA–Protein interactions for RNA: ENST00000423161.3

SREBF1-206, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-206	ENST00000423161	MAST1	Q9Y2H9	1570 aa		29.21	■■■□□ 2.27
SREBF1-206	ENST00000423161	MYOM3	Q5VTT5	1437 aa		29.2	■■■□□ 2.26
SREBF1-206	ENST00000423161	MIA2	Q96PC5	1412 aa		29.17	■■■□□ 2.26
SREBF1-206	ENST00000423161	PLA2R1	Q13018	1463 aa		29.17	■■■□□ 2.26
SREBF1-206	ENST00000423161	LTBP4	Q8N2S1	1624 aa		29.14	■■■□□ 2.26
SREBF1-206	ENST00000423161	RNF17	Q9BXT8	1623 aa	Known RBP	29.13	■■■□□ 2.25
SREBF1-206	ENST00000423161	A2ML1	A8K2U0	1454 aa		29.13	■■■□□ 2.25
SREBF1-206	ENST00000423161	PZP	P20742	1482 aa		29.13	■■■□□ 2.25
SREBF1-206	ENST00000423161	NCKAP5L	Q9HCH0	1330 aa		29.13	■■■□□ 2.25
SREBF1-206	ENST00000423161	DNMT1	P26358	1616 aa	Known RBP	29.12	■■■□□ 2.25
SREBF1-206	ENST00000423161	WASHC2C	Q9Y4E1	1318 aa		29.11	■■■□□ 2.25
SREBF1-206	ENST00000423161	TCOF1	Q13428	1488 aa	Known RBP	29.1	■■■□□ 2.25
SREBF1-206	ENST00000423161	EIF2AK4	Q9P2K8	1649 aa	Known RBP	29.1	■■■□□ 2.25
SREBF1-206	ENST00000423161	TNR	Q92752	1358 aa		29.09	■■■□□ 2.25
SREBF1-206	ENST00000423161	PKD2	Q13563	968 aa		29.08	■■■□□ 2.25
SREBF1-206	ENST00000423161	ZC3H13	Q5T200	1668 aa	Known RBP	29.08	■■■□□ 2.25
SREBF1-206	ENST00000423161	CROCC2	H7BZ55	1655 aa		29.07	■■■□□ 2.24
SREBF1-206	ENST00000423161	APLP2	Q06481	763 aa		29.07	■■■□□ 2.24
SREBF1-206	ENST00000423161	FBXO31	Q5XUX0	539 aa	Predicted RBP	29.07	■■■□□ 2.24
SREBF1-206	ENST00000423161	POLR1A	O95602	1720 aa	Predicted RBP	29.06	■■■□□ 2.24
SREBF1-206	ENST00000423161	PTPN23	Q9H3S7	1636 aa		29.05	■■■□□ 2.24
SREBF1-206	ENST00000423161	IQSEC2	Q5JU85	1478 aa		29.03	■■■□□ 2.24
SREBF1-206	ENST00000423161	ABCC3	O15438	1527 aa		29.02	■■■□□ 2.24
SREBF1-206	ENST00000423161	MROH1	Q8NDA8	1641 aa		29.02	■■■□□ 2.24
SREBF1-206	ENST00000423161	CEP152	O94986	1710 aa		29.01	■■■□□ 2.23
SREBF1-206	ENST00000423161	DUOX2	Q9NRD8	1548 aa		29	■■■□□ 2.23
SREBF1-206	ENST00000423161	SHANK2	Q9UPX8	1470 aa		28.98	■■■□□ 2.23
SREBF1-206	ENST00000423161	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.98	■■■□□ 2.23
SREBF1-206	ENST00000423161	NLRP1	Q9C000	1473 aa		28.97	■■■□□ 2.23
SREBF1-206	ENST00000423161	CFAP65	Q6ZU64	1925 aa	Known RBP	28.96	■■■□□ 2.23
SREBF1-206	ENST00000423161	NEURL4	Q96JN8	1562 aa		28.96	■■■□□ 2.23
SREBF1-206	ENST00000423161	ABCC5	O15440	1437 aa		28.95	■■■□□ 2.23
SREBF1-206	ENST00000423161	FGD6	Q6ZV73	1430 aa		28.94	■■■□□ 2.22
SREBF1-206	ENST00000423161	UGGT1	Q9NYU2	1555 aa		28.94	■■■□□ 2.22
SREBF1-206	ENST00000423161	SPATA31D1	Q6ZQQ2	1576 aa		28.93	■■■□□ 2.22
SREBF1-206	ENST00000423161	KIF15	Q9NS87	1388 aa		28.93	■■■□□ 2.22
SREBF1-206	ENST00000423161	DAPK1	P53355	1430 aa		28.92	■■■□□ 2.22
SREBF1-206	ENST00000423161	ERVK-7	P63135	1459 aa		28.9	■■■□□ 2.22
SREBF1-206	ENST00000423161	PRDM15	P57071	1507 aa	Predicted RBP	28.89	■■■□□ 2.22
SREBF1-206	ENST00000423161	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.89	■■■□□ 2.22
SREBF1-206	ENST00000423161	ERBIN	Q96RT1	1412 aa		28.89	■■■□□ 2.22
SREBF1-206	ENST00000423161	THEMIS	Q8N1K5	641 aa	Predicted RBP	28.87	■■■□□ 2.21
SREBF1-206	ENST00000423161	RRP7BP	Q9NSQ0	103 aa		28.87	■■■□□ 2.21
SREBF1-206	ENST00000423161	DEPDC5	O75140	1603 aa		28.86	■■■□□ 2.21
SREBF1-206	ENST00000423161	ANKLE2	Q86XL3	938 aa		28.84	■■■□□ 2.21
SREBF1-206	ENST00000423161	UBR1	Q8IWV7	1749 aa		28.8	■■■□□ 2.2
SREBF1-206	ENST00000423161	IQGAP1	P46940	1657 aa		28.8	■■■□□ 2.2
SREBF1-206	ENST00000423161	MED14	O60244	1454 aa		28.79	■■■□□ 2.2
SREBF1-206	ENST00000423161	NPHP4	O75161	1426 aa	Predicted RBP	28.78	■■■□□ 2.2
SREBF1-206	ENST00000423161	ANKRD30A	Q9BXX3	1397 aa		28.78	■■■□□ 2.2
SREBF1-206	ENST00000423161	CHIC2	Q9UKJ5	165 aa		28.78	■■■□□ 2.2
SREBF1-206	ENST00000423161	CPS1	P31327	1500 aa		28.78	■■■□□ 2.2
SREBF1-206	ENST00000423161	ARHGAP31	Q2M1Z3	1444 aa		28.77	■■■□□ 2.2
SREBF1-206	ENST00000423161	UBAP1L	F5GYI3	381 aa		28.77	■■■□□ 2.2
SREBF1-206	ENST00000423161	VWDE	Q8N2E2	1590 aa		28.75	■■■□□ 2.19
SREBF1-206	ENST00000423161	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	28.75	■■■□□ 2.19	1e-9	■□□□□ 9.8
SREBF1-206	ENST00000423161	KANK1	Q14678	1352 aa		28.75	■■■□□ 2.19
SREBF1-206	ENST00000423161	ADGRL2	O95490	1459 aa		28.72	■■■□□ 2.19
SREBF1-206	ENST00000423161	LMTK2	Q8IWU2	1503 aa		28.69	■■■□□ 2.18
SREBF1-206	ENST00000423161	DISP3	Q9P2K9	1392 aa		28.68	■■■□□ 2.18
SREBF1-206	ENST00000423161	FAM50A	Q14320	339 aa	Known RBP	28.68	■■■□□ 2.18
SREBF1-206	ENST00000423161	PIK3C2B	O00750	1634 aa		28.68	■■■□□ 2.18
SREBF1-206	ENST00000423161	STRCP1	A6NGW2	1772 aa		28.66	■■■□□ 2.18
SREBF1-206	ENST00000423161	SCAF11	Q99590	1463 aa	Known RBP	28.65	■■■□□ 2.18
SREBF1-206	ENST00000423161	SLIT1	O75093	1534 aa		28.64	■■■□□ 2.18
SREBF1-206	ENST00000423161	ARHGAP23	Q9P227	1491 aa		28.64	■■■□□ 2.17
SREBF1-206	ENST00000423161	EFCAB6	Q5THR3	1501 aa		28.63	■■■□□ 2.17
SREBF1-206	ENST00000423161	KDM5A	P29375	1690 aa	Known RBP	28.61	■■■□□ 2.17
SREBF1-206	ENST00000423161	SYNM	O15061	1565 aa		28.59	■■■□□ 2.17
SREBF1-206	ENST00000423161	ANKRD50	Q9ULJ7	1429 aa		28.58	■■■□□ 2.17
SREBF1-206	ENST00000423161	TOM1	O60784	492 aa		28.57	■■■□□ 2.16
SREBF1-206	ENST00000423161	SCAF1	Q9H7N4	1312 aa	Known RBP	28.57	■■■□□ 2.16
SREBF1-206	ENST00000423161	LTK	P29376	864 aa		28.56	■■■□□ 2.16
SREBF1-206	ENST00000423161	TXNDC2	Q86VQ3	553 aa		28.55	■■■□□ 2.16
SREBF1-206	ENST00000423161	PIP4K2B	P78356	416 aa		28.54	■■■□□ 2.16
SREBF1-206	ENST00000423161	STAG3	Q9UJ98	1225 aa		28.54	■■■□□ 2.16
SREBF1-206	ENST00000423161	LRRC7	Q96NW7	1537 aa		28.53	■■■□□ 2.16
SREBF1-206	ENST00000423161	NOS1	P29475	1434 aa		28.53	■■■□□ 2.16
SREBF1-206	ENST00000423161	EID1	Q9Y6B2	187 aa		28.53	■■■□□ 2.16
SREBF1-206	ENST00000423161	TMEM2	Q9UHN6	1383 aa		28.52	■■■□□ 2.16
SREBF1-206	ENST00000423161	TET3	O43151	1660 aa		28.52	■■■□□ 2.16
SREBF1-206	ENST00000423161	IDI1	Q13907	227 aa		28.51	■■■□□ 2.15
SREBF1-206	ENST00000423161	ALK	Q9UM73	1620 aa		28.51	■■■□□ 2.15
SREBF1-206	ENST00000423161	GCC2	Q8IWJ2	1684 aa		28.5	■■■□□ 2.15
SREBF1-206	ENST00000423161	UNC13B	O14795	1591 aa		28.5	■■■□□ 2.15
SREBF1-206	ENST00000423161	ADGRB3	O60242	1522 aa		28.49	■■■□□ 2.15
SREBF1-206	ENST00000423161	RPRD2	Q5VT52	1461 aa	Known RBP	28.48	■■■□□ 2.15
SREBF1-206	ENST00000423161	ILDR2	Q71H61	639 aa		28.48	■■■□□ 2.15
SREBF1-206	ENST00000423161	MYO5B	Q9ULV0	1848 aa		28.46	■■■□□ 2.15
SREBF1-206	ENST00000423161	XIRP1	Q702N8	1843 aa	Known RBP	28.46	■■■□□ 2.15
SREBF1-206	ENST00000423161	HSPA1L	P34931	641 aa		28.45	■■■□□ 2.14
SREBF1-206	ENST00000423161	ROCK1	Q13464	1354 aa		28.42	■■■□□ 2.14
SREBF1-206	ENST00000423161	SLC52A1	Q9NWF4	448 aa		28.42	■■■□□ 2.14
SREBF1-206	ENST00000423161		E9PCH4	1651 aa		28.39	■■■□□ 2.14
SREBF1-206	ENST00000423161	IQGAP3	Q86VI3	1631 aa		28.39	■■■□□ 2.13
SREBF1-206	ENST00000423161	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.37	■■■□□ 2.13
SREBF1-206	ENST00000423161	TMEM131L	A2VDJ0	1609 aa		28.35	■■■□□ 2.13
SREBF1-206	ENST00000423161	MED1	Q15648	1581 aa	Predicted RBP	28.34	■■■□□ 2.13
SREBF1-206	ENST00000423161	ITGAE	P38570	1179 aa		28.34	■■■□□ 2.13
SREBF1-206	ENST00000423161	SLC26A8	Q96RN1	970 aa		28.31	■■■□□ 2.12

Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms